1 | #!/usr/bin/perl
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2 | use strict;
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3 | use warnings;
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4 |
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5 | # Requires setup.bash to have been sourced
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6 | BEGIN
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7 | {
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8 | die "GSDLHOME not set\n" unless defined $ENV{'GSDLHOME'};
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9 | die "GSDLOS not set\n" unless defined $ENV{'GSDLOS'};
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10 | die "HDFS HOST not set (set in <gsdl>/ext/parallel_processing/setup.bash)\n" unless defined $ENV{'HDFSHOST'};
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11 | die "HDFS PORT not set (set in <gsdl>/ext/parallel_processing/setup.bash)\n" unless defined $ENV{'HDFSPORT'};
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12 | }
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13 |
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14 | print "===== Greenstone Import using Hadoop =====\n";
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15 |
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16 | # 0. Init
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17 | my $collection = 'test';
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18 | my $debug = 0;
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19 | my $dry_run = 0;
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20 | my $gsdl_home = $ENV{'GSDLHOME'};
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21 | my $gsdl_hadoop_ext = $ENV{'GEXTPARALLELBUILDING_INSTALLED'};
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22 | my $hadoop_exe = 'hadoop'; # you may add path
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23 | my $cluster_head = $ENV{'HDFSHOST'}; # may not be true on advanced configs
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24 | my $hdfs_fs_prefix = 'hdfs://' . $ENV{'HDFSHOST'} . ':' . $ENV{'HDFSPORT'};
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25 | my $refresh_import = 0;
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26 | my $username = `whoami`;
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27 | chomp($username);
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28 |
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29 | `rocks > /dev/null 2>&1`;
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30 | my $is_rocks_cluster = ($? == 0);
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31 |
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32 | # 1. Read and validate parameters
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33 | if (defined $ARGV[0])
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34 | {
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35 | $collection = $ARGV[0];
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36 | }
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37 | my $gs_collection_dir = $gsdl_home . '/collect/' . $collection;
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38 | my $gs_import_dir = $gs_collection_dir . '/import';
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39 | if (!-d $gs_import_dir)
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40 | {
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41 | die("Error! Collection's import directory cannot be found: " . $gs_import_dir . "\n");
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42 | }
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43 | my $gs_results_dir = $gs_collection_dir . '/results';
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44 | if (!-d $gs_results_dir)
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45 | {
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46 | mkdir($gs_results_dir, 0755);
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47 | }
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48 | $gs_results_dir .= '/' . time();
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49 | if (!-d $gs_results_dir)
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50 | {
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51 | mkdir($gs_results_dir, 0755);
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52 | }
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53 | my $gs_archives_dir = $gs_collection_dir . '/archives';
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54 | # - directories within HDFS
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55 | my $hdfs_input_dir = &urlCat($hdfs_fs_prefix, 'user', $username, 'gsdl', 'collect', $collection, 'import');
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56 | my $hdfs_output_dir = &urlCat($hdfs_fs_prefix, 'user', $username, 'gsdl', 'collect', $collection, 'archives');
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57 |
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58 | # 2. Copy the import directory into HDFS
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59 | print " * Replicating import directory in HDFS...";
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60 | # - check if import directory already exists
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61 | my $hdfs_import_exists = &hdfsTest('d', 0, $hdfs_input_dir);
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62 | if ($refresh_import || !$hdfs_import_exists)
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63 | {
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64 | # - clear out the old import directory
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65 | if ($hdfs_import_exists)
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66 | {
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67 | &hdfsCommand('rmr', $hdfs_input_dir);
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68 | }
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69 | # - now recursively copy the contents of import directory into HDFS ensuring
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70 | # that relative paths are maintained
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71 | my $file_count = &recursiveCopy($gs_import_dir, $hdfs_input_dir);
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72 | &debugPrint($file_count . " files 'putted'");
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73 | print "Done!\n";
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74 | }
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75 | else
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76 | {
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77 | print "Already exists!\n";
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78 | }
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79 | # - clear out the archives regardless
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80 | if (-e $gs_archives_dir)
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81 | {
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82 | &shellCommand('rm -rf "' . $gs_archives_dir . '"');
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83 | }
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84 | mkdir($gs_archives_dir, 0755);
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85 | if (&hdfsTest('d', 0, $hdfs_output_dir))
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86 | {
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87 | print " * Clearing existing archives directory for this collection... ";
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88 | &hdfsCommand('rmr', $hdfs_output_dir);
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89 | print "Done!\n";
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90 | }
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91 | # - clear out any old logs
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92 | if (!&dirIsEmpty('/tmp/greenstone'))
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93 | {
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94 | &shellCommand('rm /tmp/greenstone/*.*');
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95 | }
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96 | if ($is_rocks_cluster)
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97 | {
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98 | &shellCommand('rocks run host "rm /tmp/greenstone/*.*"');
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99 | }
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100 |
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101 | # 3. Special case for *Server type infodbs (namely TDBServer and GDBMServer)
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102 | # where we start the server now to ensure it lives on the head node
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103 | my $server_host = '';
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104 | my $server_port = '';
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105 | my $configuration_path = $gs_collection_dir . '/etc/collect.cfg';
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106 | my $infodbtype = `grep -P "^infodbtype" $configuration_path`;
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107 | my $server_prefix = '';
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108 | if ($infodbtype =~ /^infodbtype\s+(gdbm|tdb)server/i)
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109 | {
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110 | $server_prefix = uc($1);
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111 | print " * Starting " . $server_prefix . "Server... ";
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112 | # - start the server on the head node and retrieve the host and port from
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113 | # the output
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114 | my $launcher_command = $server_prefix . "Server.pl " . $$ . " " . $collection;
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115 | my $launcher_output = &shellCommand($launcher_command);
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116 | if ($launcher_output =~ /Server now listening on ([^:]+):(\d+)/)
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117 | {
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118 | $server_host = $1;
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119 | $server_port = $2;
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120 | print "running on " . $server_host . ":" . $server_port . "\n";
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121 | }
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122 | else
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123 | {
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124 | print "Failed!\n";
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125 | exit;
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126 | }
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127 | # - use the client tool to add ourselves as a listener
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128 | print " * Registering as listener... ";
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129 | my $client_command = $server_prefix . "Client.pl " . $server_host . " " . $server_port . " \"#a:" . $$ . "\"";
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130 | &shellCommand($client_command);
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131 | print "Done!\n";
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132 | }
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133 | else
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134 | {
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135 | print "Error! True Hadoop processing is only available when Greenstone is\n";
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136 | print " configured to use either GDBMServer or TDBServer.\n";
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137 | exit;
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138 | }
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139 |
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140 | # 4. Running Hadoop - we hand in the import dirctory (within HDFS) as the input
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141 | # and allow the FileInputFormat to split it up into files to be processed
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142 | # in Greenstone. This works for collections with one file per document, like
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143 | # Lorem and ReplayMe, but might not work well with multiple file documents
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144 | # such as the Demo collection
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145 | print " * Running import using Hadoop...";
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146 | my $hadoop_log = $gs_results_dir . '/hadoop.log';
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147 | my $hadoop_command = $hadoop_exe . ' jar ' . $gsdl_hadoop_ext . '/lib/hadoop-greenstone.jar org.nzdl.gsdl.HadoopGreenstoneIngest "' . $gsdl_home . '" "' . $ENV{'HDFSHOST'} . '" ' . $ENV{'HDFSPORT'} . ' "' . $ENV{'HADOOP_PREFIX'} . '" ' . $collection . " " . $hdfs_input_dir . " " . $hdfs_output_dir . " > " . $hadoop_log . " 2>&1";
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148 | &shellCommand($hadoop_command);
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149 | print "Done!\n";
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150 |
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151 | # 5. If we ran *Server infodbs, we now need to shut them down
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152 | if ($server_prefix ne '')
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153 | {
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154 | print " * Deregistering as listener and shutting down... ";
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155 | # - deregister as a listener
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156 | my $client_command1 = $server_prefix . "Client.pl " . $server_host . " " . $server_port . " \"#r:" . $$ . "\"";
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157 | &shellCommand($client_command1);
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158 | # - send quit command
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159 | my $client_command2 = $server_prefix . "Client.pl " . $server_host . " " . $server_port . " \"#q:" . $$ . "\"";
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160 | &shellCommand($client_command2);
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161 | print "Done!\n";
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162 | }
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163 |
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164 |
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165 | # 6. Gather logs
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166 | print " * Gathering logs from compute nodes... ";
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167 | # - local files
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168 | if (!&dirIsEmpty('/tmp/greenstone'))
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169 | {
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170 | &shellCommand('cp /tmp/greenstone/*.* ' . $gs_results_dir);
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171 | }
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172 | if (-d $gs_collection_dir . '/logs')
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173 | {
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174 | &shellCommand('cp ' . $gs_collection_dir . '/logs/*.* ' . $gs_results_dir);
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175 | }
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176 | # - remote files
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177 | if ($is_rocks_cluster)
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178 | {
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179 | &shellCommand('rocks run host "scp /tmp/greenstone/*.* ' . $cluster_head . ':' . $gs_results_dir . '"');
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180 | &shellCommand('rocks run host "scp /tmp/gsimport-*/logs/*.log ' . $cluster_head . ':' . $gs_results_dir . '"');
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181 | }
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182 | print "Done!\n";
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183 | # - generate data locality report
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184 | &shellCommand('parse_task_info_from_hadoop_log.pl "' . $gs_results_dir . '"');
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185 |
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186 | # 7. Done - clean up
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187 | print " * Cleaning up temporary files... ";
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188 | &shellCommand('rm -rf /tmp/greenstone');
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189 | if ($is_rocks_cluster)
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190 | {
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191 | &shellCommand('rocks run host "rm -rf /tmp/greenstone"');
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192 | }
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193 | print "Done!\n";
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194 | print "Complete!\n\n";
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195 |
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196 | exit;
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197 |
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198 | # /** @function debugPrint
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199 | # */
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200 | sub debugPrint
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201 | {
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202 | my $msg = shift(@_);
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203 | if ($debug)
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204 | {
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205 | print "[Debug] " . $msg . "\n";
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206 | }
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207 | }
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208 | # /** debugPrint() **/
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209 |
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210 | # /** @function hdfsCommand
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211 | # */
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212 | sub hdfsCommand
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213 | {
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214 | my $command = shift(@_);
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215 | my $paths = '"' . join('" "', @_) . '"';
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216 | my $hdfs_command = $hadoop_exe . ' fs -' . $command . ' ' . $paths . ' 2>&1';
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217 | &shellCommand($hdfs_command);
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218 | return $?;
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219 | }
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220 | # /** hdfsCommand() **/
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221 |
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222 | # /** @function hdfsTest
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223 | # */
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224 | sub hdfsTest
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225 | {
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226 | my $command = shift(@_);
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227 | my $test_target = shift(@_);
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228 | my $result = &hdfsCommand('test -' . $command, @_);
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229 | return ($result == $test_target);
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230 | }
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231 | # /** hdfsTest() **/
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232 |
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233 | # /**
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234 | # */
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235 | sub printUsage
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236 | {
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237 | print "usage: hadoop_import.pl <collection> [<refresh_import>] [<\"removeold\"|\"keepold\">]\n";
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238 | exit;
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239 | }
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240 | # /** printUsage() **/
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241 |
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242 | # /**
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243 | # */
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244 | sub recursiveCopy
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245 | {
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246 | my ($src_dir, $hdfs_dir) = @_;
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247 | my $file_count = 0;
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248 | # - create the directory in HDFS
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249 | &hdfsCommand('mkdir', $hdfs_dir);
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250 | # - search $src_dir for files
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251 | opendir(DH, $src_dir) or die("Error! Cannot open directory for reading: " . $src_dir);
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252 | my @files = readdir(DH);
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253 | closedir(DH);
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254 | foreach my $file (@files)
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255 | {
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256 | # - skip dot prefix files
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257 | if ($file !~ /^\./)
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258 | {
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259 | my $src_path = $src_dir . '/' . $file;
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260 | # - recurse directories, remembering to extend HDFS dir too
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261 | if (-d $src_path)
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262 | {
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263 | my $new_hdfs_dir = $hdfs_dir . '/' . $file;
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264 | $file_count += &recursiveCopy($src_path, $new_hdfs_dir);
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265 | }
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266 | # - and use 'put' to copy files
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267 | else
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268 | {
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269 | my $hdfs_path = $hdfs_dir . '/' . $file;
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270 | &hdfsCommand('put', $src_path, $hdfs_path);
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271 | $file_count++;
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272 | }
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273 | }
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274 | }
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275 | return $file_count;
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276 | }
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277 | # /** recursiveCopy() **/
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278 |
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279 | # /** @function shellCommand
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280 | # */
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281 | sub shellCommand
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282 | {
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283 | my $cmd = shift(@_);
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284 | my $output = '';
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285 | &debugPrint($cmd);
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286 | if (!$dry_run)
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287 | {
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288 | $output = `$cmd`;
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289 | }
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290 | return $output;
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291 | }
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292 | # /** shellCommand() **/
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293 |
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294 | # /** @function urlCat
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295 | # */
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296 | sub urlCat
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297 | {
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298 | my $url = join('/', @_);
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299 | return $url;
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300 | }
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301 | # /** urlCat() **/
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302 |
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303 | # /**
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304 | # */
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305 | sub dirIsEmpty
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306 | {
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307 | my $dir = shift(@_);
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308 | my @files;
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309 | if (-e $dir)
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310 | {
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311 | opendir(DIR, $dir) or die $!;
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312 | @files = grep { !m/\A\.{1,2}\Z/} readdir(DIR);
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313 | closedir(DIR);
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314 | }
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315 | @files ? 0 : 1;
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316 | }
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317 | # /** dirIsEmpty() **/
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