| 1 | #!/usr/bin/perl
|
|---|
| 2 |
|
|---|
| 3 | use strict;
|
|---|
| 4 | use warnings;
|
|---|
| 5 |
|
|---|
| 6 | # Requires setup.bash to have been sourced
|
|---|
| 7 | BEGIN
|
|---|
| 8 | {
|
|---|
| 9 | die "GSDLHOME not set\n" unless defined $ENV{'GSDLHOME'};
|
|---|
| 10 | die "GSDLOS not set\n" unless defined $ENV{'GSDLOS'};
|
|---|
| 11 | # Ensure Greenstone Perl locations are in INC
|
|---|
| 12 | unshift (@INC, $ENV{'GSDLHOME'} . '/perllib');
|
|---|
| 13 | unshift (@INC, $ENV{'GSDLHOME'} . '/perllib/cpan');
|
|---|
| 14 | # we'll need the perl version number
|
|---|
| 15 | my ($version_number) = `perl-version.pl`;
|
|---|
| 16 | if (defined $ENV{'GSDLEXTS'})
|
|---|
| 17 | {
|
|---|
| 18 | my @extensions = split(/:/,$ENV{'GSDLEXTS'});
|
|---|
| 19 | foreach my $e (@extensions)
|
|---|
| 20 | {
|
|---|
| 21 | my $ext_prefix = $ENV{'GSDLHOME'} . '/ext/' . $e;
|
|---|
| 22 | unshift (@INC, $ext_prefix . '/perllib');
|
|---|
| 23 | unshift (@INC, $ext_prefix . '/perllib/cpan');
|
|---|
| 24 | unshift (@INC, $ext_prefix . '/' . $ENV{'GSDLOS'} . '/lib/perl/' . $version_number);
|
|---|
| 25 | }
|
|---|
| 26 | }
|
|---|
| 27 | }
|
|---|
| 28 |
|
|---|
| 29 | use Devel::Peek;
|
|---|
| 30 | use Sort::Key::Natural qw(natsort);
|
|---|
| 31 | use Time::Local;
|
|---|
| 32 |
|
|---|
| 33 | print "\n===== GS Hadoop Report =====\n";
|
|---|
| 34 | print "Generate a report (CSV) from the output of a parallel processing Green-\n";
|
|---|
| 35 | print "stone import, suitable for feeding into the Gantt chart generator.\n";
|
|---|
| 36 | print "============================\n\n";
|
|---|
| 37 |
|
|---|
| 38 | # Configuration
|
|---|
| 39 | if (!defined $ARGV[0] || !-d $ARGV[0])
|
|---|
| 40 | {
|
|---|
| 41 | die("usage: hadoop_report.pl <path to results>\n");
|
|---|
| 42 | }
|
|---|
| 43 | my $results_path = $ARGV[0];
|
|---|
| 44 |
|
|---|
| 45 | # Read in hadoop.log and parse top level record
|
|---|
| 46 | print ' * Reading and parsing "hadoop.log"... ';
|
|---|
| 47 | my $job_record = {'host'=>'', 'job'=>'', 'start'=>0, 'end'=>0, 'cpu_time'=>0};
|
|---|
| 48 | my $hadoop_log_path = $results_path . '/hadoop.log';
|
|---|
| 49 | if (open(HLIN, '<:utf8', $hadoop_log_path))
|
|---|
| 50 | {
|
|---|
| 51 | while (my $line = <HLIN>)
|
|---|
| 52 | {
|
|---|
| 53 | if ($line =~ /host:(.+)/)
|
|---|
| 54 | {
|
|---|
| 55 | $job_record->{'host'} = $1;
|
|---|
| 56 | }
|
|---|
| 57 | elsif ($line =~ /Running job: job_(\d+_\d+)/)
|
|---|
| 58 | {
|
|---|
| 59 | $job_record->{'job'} = $1;
|
|---|
| 60 | }
|
|---|
| 61 | elsif ($line =~ /CPU time spent \(ms\)=(\d+)/)
|
|---|
| 62 | {
|
|---|
| 63 | $job_record->{'cpu_time'} = $1;
|
|---|
| 64 | }
|
|---|
| 65 | elsif ($job_record->{'start'} == 0 && $line =~ /(\d\d)\/(\d\d)\/(\d\d) (\d\d):(\d\d):(\d\d)/)
|
|---|
| 66 | {
|
|---|
| 67 | $job_record->{'start'} = timelocal($6, $5, $4, $3, ($2 - 1), $1);
|
|---|
| 68 | }
|
|---|
| 69 | elsif ($line =~ /(\d\d)\/(\d\d)\/(\d\d) (\d\d):(\d\d):(\d\d)/)
|
|---|
| 70 | {
|
|---|
| 71 | my $end = timelocal($6, $5, $4, $3, ($2 - 1), $1);
|
|---|
| 72 | if ($end > $job_record->{'end'})
|
|---|
| 73 | {
|
|---|
| 74 | $job_record->{'end'} = $end;
|
|---|
| 75 | }
|
|---|
| 76 | }
|
|---|
| 77 | }
|
|---|
| 78 | close(HLIN);
|
|---|
| 79 | if ($job_record->{'start'} == 0 || $job_record->{'end'} == 0)
|
|---|
| 80 | {
|
|---|
| 81 | die('Error! Failed to parse timing information from log: ' . $hadoop_log_path);
|
|---|
| 82 | }
|
|---|
| 83 | }
|
|---|
| 84 | else
|
|---|
| 85 | {
|
|---|
| 86 | die('Error! Failed to open file for reading: ' . $hadoop_log_path);
|
|---|
| 87 | }
|
|---|
| 88 | print "Done!\n";
|
|---|
| 89 |
|
|---|
| 90 | # Read in data_locality.csv (will be matched to task logs)
|
|---|
| 91 | my $data_was_local = {};
|
|---|
| 92 | my $data_locality_csv_path = $results_path . '/data_locality.csv';
|
|---|
| 93 | if (-f $data_locality_csv_path)
|
|---|
| 94 | {
|
|---|
| 95 | print ' * Reading and parsing "data_locality.csv"... ';
|
|---|
| 96 | if (open(DLIN, '<:utf8', $data_locality_csv_path))
|
|---|
| 97 | {
|
|---|
| 98 | while (my $line = <DLIN>)
|
|---|
| 99 | {
|
|---|
| 100 | # note that the line may begin with a taskid or just a taskno (legacy)
|
|---|
| 101 | if ($line =~ /(\d+),\d,(\d)/)
|
|---|
| 102 | {
|
|---|
| 103 | $data_was_local->{$1} = $2;
|
|---|
| 104 | }
|
|---|
| 105 | }
|
|---|
| 106 | close(DLIN);
|
|---|
| 107 | }
|
|---|
| 108 | else
|
|---|
| 109 | {
|
|---|
| 110 | die('Error! Failed to open file for reading: ' . $data_locality_csv_path);
|
|---|
| 111 | }
|
|---|
| 112 | print "Done!\n";
|
|---|
| 113 | }
|
|---|
| 114 | else
|
|---|
| 115 | {
|
|---|
| 116 | print " * Data locality not available or not applicable\n";
|
|---|
| 117 | }
|
|---|
| 118 |
|
|---|
| 119 | # Read in all task logs and parse task records
|
|---|
| 120 | my $task_records;
|
|---|
| 121 | print " * Locating task logs...\n";
|
|---|
| 122 | if (opendir(DH, $results_path))
|
|---|
| 123 | {
|
|---|
| 124 | my @files = readdir(DH);
|
|---|
| 125 | foreach my $file (sort @files)
|
|---|
| 126 | {
|
|---|
| 127 | if ($file =~ /import-hadoop-(\d+_\d+)_m_(\d+)_\d+\.log/)
|
|---|
| 128 | {
|
|---|
| 129 | my $job_no = $1;
|
|---|
| 130 | my $task_no = $2;
|
|---|
| 131 | my $is_data_local = 0;
|
|---|
| 132 | if (defined ($data_was_local->{$task_no}))
|
|---|
| 133 | {
|
|---|
| 134 | $is_data_local = $data_was_local->{$task_no};
|
|---|
| 135 | }
|
|---|
| 136 | my $task_record = {'host'=>'', 'cpu'=>0, 'job' => $job_no, 'task' => $task_no, 'start'=>0, 'end'=>0, 'cpu_time'=>0, 'data_locality'=>$is_data_local, 'file'=>'', 'percom'=>'NA'};
|
|---|
| 137 | print ' - Reading and parsing "' . $file . '"... ';
|
|---|
| 138 | my $task_log_path = $results_path . '/' . $file;
|
|---|
| 139 | my $io_time = 0;
|
|---|
| 140 | if (open(TIN, '<:utf8', $task_log_path))
|
|---|
| 141 | {
|
|---|
| 142 | my $io_start_time = 0;
|
|---|
| 143 | while (my $line = <TIN>)
|
|---|
| 144 | {
|
|---|
| 145 | if ($line =~ /\[Started:(\d+(?:\.\d+)?)\]/)
|
|---|
| 146 | {
|
|---|
| 147 | $task_record->{'start'} = $1;
|
|---|
| 148 | }
|
|---|
| 149 | elsif ($line =~ /\[Host:([^\]]+)\]/)
|
|---|
| 150 | {
|
|---|
| 151 | $task_record->{'host'} = $1;
|
|---|
| 152 | }
|
|---|
| 153 | elsif ($line =~ /\[CPU:(\d+)\]/)
|
|---|
| 154 | {
|
|---|
| 155 | $task_record->{'cpu'} = $1;
|
|---|
| 156 | }
|
|---|
| 157 | elsif ($line =~ /\[Map:([^\>]+)=>/)
|
|---|
| 158 | {
|
|---|
| 159 | $task_record->{'file'} = $1;
|
|---|
| 160 | }
|
|---|
| 161 | elsif ($line =~ /\[IOS:(\d+)\]/)
|
|---|
| 162 | {
|
|---|
| 163 | $io_start_time = $1;
|
|---|
| 164 | }
|
|---|
| 165 | elsif ($io_start_time > 0 && $line =~ /\[IOE:(\d+)\]/)
|
|---|
| 166 | {
|
|---|
| 167 | $io_time += ($1 - $io_start_time);
|
|---|
| 168 | $io_start_time = 0;
|
|---|
| 169 | }
|
|---|
| 170 | elsif ($line =~ /\[Completed:(\d+(?:\.\d+)?)\]/)
|
|---|
| 171 | {
|
|---|
| 172 | my $end_time = $1;
|
|---|
| 173 | $task_record->{'end'} = $end_time;
|
|---|
| 174 | if ($io_start_time > 0)
|
|---|
| 175 | {
|
|---|
| 176 | $io_time += ($end_time - $io_start_time);
|
|---|
| 177 | }
|
|---|
| 178 | }
|
|---|
| 179 | }
|
|---|
| 180 | close(TIN);
|
|---|
| 181 | # Calculate CPU time (total time - IO time)
|
|---|
| 182 | $task_record->{'cpu_time'} = $task_record->{'end'} - $task_record->{'start'} - $io_time;
|
|---|
| 183 |
|
|---|
| 184 | # We should now have the filename - use this and try and locate a
|
|---|
| 185 | # convert log for this item (assuming it is multimedia, which it may
|
|---|
| 186 | # not be)
|
|---|
| 187 | if (defined $task_record->{'file'} && $task_record->{'file'} =~ /\/([^\/]+)\.ts/)
|
|---|
| 188 | {
|
|---|
| 189 | my $filename_sans_extension = $1;
|
|---|
| 190 | my $convert_log = $results_path . '/convert-' . $filename_sans_extension . '.log';
|
|---|
| 191 | if (-f $convert_log)
|
|---|
| 192 | {
|
|---|
| 193 | print '[Reading and parsing convert log]... ';
|
|---|
| 194 | if (open(CLIN, '<:utf8', $convert_log))
|
|---|
| 195 | {
|
|---|
| 196 | my $max_percent = 0.00;
|
|---|
| 197 | while (my $line = <CLIN>)
|
|---|
| 198 | {
|
|---|
| 199 | if ($line =~ /.*Encoding: task 1 of 1, (\d+\.\d\d) \%/)
|
|---|
| 200 | {
|
|---|
| 201 | my $percent = $1;
|
|---|
| 202 | if ($percent > $max_percent)
|
|---|
| 203 | {
|
|---|
| 204 | $max_percent = $percent;
|
|---|
| 205 | }
|
|---|
| 206 | }
|
|---|
| 207 | }
|
|---|
| 208 | close(CLIN);
|
|---|
| 209 | $task_record->{'percom'} = $max_percent;
|
|---|
| 210 | }
|
|---|
| 211 | else
|
|---|
| 212 | {
|
|---|
| 213 | print STDERR "Warning! Failed to open log file for reading: " . $convert_log . "\n";
|
|---|
| 214 | }
|
|---|
| 215 | }
|
|---|
| 216 | }
|
|---|
| 217 |
|
|---|
| 218 | # Store this record
|
|---|
| 219 | $task_records->{$task_no} = $task_record;
|
|---|
| 220 | }
|
|---|
| 221 | else
|
|---|
| 222 | {
|
|---|
| 223 | die('Error! Failed to open file for reading: ' . $task_log_path);
|
|---|
| 224 | }
|
|---|
| 225 | print "Done!\n";
|
|---|
| 226 | }
|
|---|
| 227 | }
|
|---|
| 228 | close(DH);
|
|---|
| 229 | }
|
|---|
| 230 | else
|
|---|
| 231 | {
|
|---|
| 232 | die('Error! Failed to open directory for reading: ' . $results_path);
|
|---|
| 233 | }
|
|---|
| 234 | print ' - Processed ' . scalar(keys(%{$task_records})) . " records\n";
|
|---|
| 235 |
|
|---|
| 236 | # Generate compute-node records
|
|---|
| 237 | print ' * Generating compute node records... ';
|
|---|
| 238 | my $node_records;
|
|---|
| 239 | foreach my $taskno (sort keys %{$task_records})
|
|---|
| 240 | {
|
|---|
| 241 | my $task_record = $task_records->{$taskno};
|
|---|
| 242 | my $node_record = {'host'=>'', 'cpu'=>0, 'job' => '', 'start'=>0, 'end'=>0, 'cpu_time'=>0};
|
|---|
| 243 | # - retrieve any existing record
|
|---|
| 244 | my $worker_id = $task_record->{'host'} . '#' . $task_record->{'cpu'};
|
|---|
| 245 | if (defined $node_records->{$worker_id})
|
|---|
| 246 | {
|
|---|
| 247 | $node_record = $node_records->{$worker_id};
|
|---|
| 248 | }
|
|---|
| 249 | if ($node_record->{'host'} eq '')
|
|---|
| 250 | {
|
|---|
| 251 | $node_record->{'host'} = $task_record->{'host'};
|
|---|
| 252 | }
|
|---|
| 253 | if ($node_record->{'cpu'} == 0)
|
|---|
| 254 | {
|
|---|
| 255 | $node_record->{'cpu'} = $task_record->{'cpu'};
|
|---|
| 256 | }
|
|---|
| 257 | if ($node_record->{'job'} eq '')
|
|---|
| 258 | {
|
|---|
| 259 | $node_record->{'job'} = $task_record->{'job'};
|
|---|
| 260 | }
|
|---|
| 261 | if ($node_record->{'start'} == 0 || $task_record->{'start'} < $node_record->{'start'})
|
|---|
| 262 | {
|
|---|
| 263 | $node_record->{'start'} = $task_record->{'start'};
|
|---|
| 264 | }
|
|---|
| 265 | if ($node_record->{'end'} == 0 || $task_record->{'end'} > $node_record->{'end'})
|
|---|
| 266 | {
|
|---|
| 267 | $node_record->{'end'} = $task_record->{'end'};
|
|---|
| 268 | }
|
|---|
| 269 | $node_record->{'cpu_time'} += $task_record->{'cpu_time'};
|
|---|
| 270 | # - store it
|
|---|
| 271 | $node_records->{$worker_id} = $node_record;
|
|---|
| 272 | }
|
|---|
| 273 | print "Done!\n";
|
|---|
| 274 |
|
|---|
| 275 | # Write out CSV of all information
|
|---|
| 276 | my $report_csv_path = $results_path . '/timing.csv';
|
|---|
| 277 | if (open(CSVOUT, '>:utf8', $report_csv_path))
|
|---|
| 278 | {
|
|---|
| 279 | my $row_counter = 1;
|
|---|
| 280 | # Header
|
|---|
| 281 | print CSVOUT "id,name,hostname,start,end,cputime,dl,pid,filename,percom\n";
|
|---|
| 282 | # Master Record
|
|---|
| 283 | print CSVOUT $row_counter . ',M0,' . $job_record->{'host'} . ',' . $job_record->{'start'} . ',' . $job_record->{'end'} . ',' . ($job_record->{'cpu_time'} / 1000) . ",0,0,NA,NA\n";
|
|---|
| 284 | $row_counter++;
|
|---|
| 285 | # For each compute node record
|
|---|
| 286 | my $known_workers = {};
|
|---|
| 287 | foreach my $worker_id (natsort(keys(%{$node_records})))
|
|---|
| 288 | {
|
|---|
| 289 | my $node_record = $node_records->{$worker_id};
|
|---|
| 290 | my $node_id = $row_counter;
|
|---|
| 291 | $row_counter++;
|
|---|
| 292 | my $csv_worker_id = 'W' . $node_record->{'cpu'};
|
|---|
| 293 | # Ensure we haven't used this id before - this should never trigger for
|
|---|
| 294 | # multicore CPUs, but will for clusters (as nearly all nodes will report
|
|---|
| 295 | # themselves as 'W0')
|
|---|
| 296 | if (defined $known_workers->{$csv_worker_id})
|
|---|
| 297 | {
|
|---|
| 298 | # Find a different worker id as this one is already in use
|
|---|
| 299 | my $counter = 0;
|
|---|
| 300 | $csv_worker_id = 'W' . $counter;
|
|---|
| 301 | while (defined $known_workers->{$csv_worker_id})
|
|---|
| 302 | {
|
|---|
| 303 | $counter++;
|
|---|
| 304 | $csv_worker_id = 'W' . $counter;
|
|---|
| 305 | }
|
|---|
| 306 | }
|
|---|
| 307 | $known_workers->{$csv_worker_id} = 1;
|
|---|
| 308 | print CSVOUT $node_id . ',' . $csv_worker_id . ',' . $node_record->{'host'} . ',' . $node_record->{'start'} . ',' . $node_record->{'end'} . ',' . $node_record->{'cpu_time'} . ",0,1,NA,NA\n";
|
|---|
| 309 | # List the child task records
|
|---|
| 310 | foreach my $taskno (sort keys %{$task_records})
|
|---|
| 311 | {
|
|---|
| 312 | my $task_record = $task_records->{$taskno};
|
|---|
| 313 | if ($task_record->{'host'} . '#' . $task_record->{'cpu'} eq $worker_id)
|
|---|
| 314 | {
|
|---|
| 315 | print CSVOUT $row_counter . ',T' . ($task_record->{'task'} + 0) . ',' . $task_record->{'host'} . ',' . $task_record->{'start'} . ',' . $task_record->{'end'} . ',' . $task_record->{'cpu_time'} . ',' . $task_record->{'data_locality'} . ',' . $node_id . ',' . $task_record->{'file'} . ',' . $task_record->{'percom'} . "\n";
|
|---|
| 316 | $row_counter++;
|
|---|
| 317 | }
|
|---|
| 318 | }
|
|---|
| 319 | }
|
|---|
| 320 | close(CSVOUT);
|
|---|
| 321 | }
|
|---|
| 322 | else
|
|---|
| 323 | {
|
|---|
| 324 | die('Error! Failed to open file for writing: ' . $report_csv_path);
|
|---|
| 325 | }
|
|---|
| 326 |
|
|---|
| 327 | print "Complete!\n\n";
|
|---|
| 328 | exit;
|
|---|
| 329 |
|
|---|
