[27279] | 1 | ###############################################################################
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| 2 | #
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| 3 | # parallelbuildinginexport.pm -- support parallel import.pl by extending
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| 4 | # inexport with parallel processing awareness and functionality
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| 5 | #
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| 6 | # A component of the Greenstone digital library software from the New Zealand
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| 7 | # Digital Library Project at the University of Waikato, New Zealand.
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| 8 | #
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| 9 | # Copyright (C) 2013 New Zealand Digital Library Project
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| 10 | #
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| 11 | # This program is free software; you can redistribute it and/or modify it under
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| 12 | # the terms of the GNU General Public License as published by the Free Software
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| 13 | # Foundation; either version 2 of the License, or (at your option) any later
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| 14 | # version.
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| 15 | #
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| 16 | # This program is distributed in the hope that it will be useful, but WITHOUT
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| 17 | # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
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| 18 | # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
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| 19 | # details.
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| 20 | #
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| 21 | # You should have received a copy of the GNU General Public License along with
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| 22 | # this program; if not, write to the Free Software Foundation, Inc., 675 Mass
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| 23 | # Ave, Cambridge, MA 02139, USA.
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| 24 | #
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| 25 | ###############################################################################
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| 26 |
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| 27 | # @author Hussein Suleman [h1], University of Cape Town, South Africa
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| 28 | # @author John Thompson [jmt12], Greenstone DL Research Group
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| 29 |
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| 30 | package parallelbuildinginexport;
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| 31 |
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[28001] | 32 | # Pragma
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[27279] | 33 | use strict;
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[28001] | 34 | no strict 'refs'; # allow filehandles to be variables and vice versa
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| 35 | no strict 'subs'; # allow barewords (eg STDERR) as function arguments
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[27279] | 36 |
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| 37 | # MODULES
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| 38 | # Randomize the order of files in the filelist
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| 39 | use List::Util qw( shuffle );
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[28770] | 40 | use Time::HiRes qw( gettimeofday tv_interval );
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[27279] | 41 |
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| 42 | # Greenstone Modules
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| 43 | use gsprintf 'gsprintf';
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| 44 | use inexport;
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| 45 |
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[28770] | 46 | our $start_time;
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[29276] | 47 | our $filelist_duration;
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[28770] | 48 |
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[27279] | 49 | BEGIN
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| 50 | {
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| 51 | @parallelbuildinginexport::ISA = ('inexport');
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| 52 | }
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| 53 |
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[28770] | 54 | END
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| 55 | {
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| 56 | if (defined $start_time)
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| 57 | {
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| 58 | my $end_time = [&gettimeofday()];
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| 59 | my $duration = tv_interval($start_time, $end_time);
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[28779] | 60 | print &makeHeader('Parallel Import Complete') . "\n";
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| 61 | print ' Ended: ' . @{$end_time}[0] . '.' . @{$end_time}[1] . "\n";
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[29276] | 62 | if (defined $filelist_duration)
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| 63 | {
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| 64 | print ' Generating raw manifest: ' . sprintf('%0.6f', $filelist_duration) . "\n";
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| 65 | }
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[28770] | 66 | print ' Duration: ' . sprintf('%0.6f', $duration) . "\n";
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[28779] | 67 | print '=' x 80 . "\n";
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[28770] | 68 | }
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| 69 | }
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| 70 |
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[27279] | 71 | # jobs and epoch added for parallel processing [hs, 1 july 2010]
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| 72 | # added aliases 'workers' and 'batchsize' [jmt12]
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| 73 | my $arguments = [
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| 74 | { 'name' => "workers",
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| 75 | 'desc' => "**Parallel Processing** The number of 'worker' threads to spawn when parallel processing",
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| 76 | 'type' => "int",
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| 77 | 'range' => "0,",
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| 78 | 'reqd' => "no",
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| 79 | 'hiddengli' => "yes" },
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| 80 | { 'name' => "batchsize",
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| 81 | 'desc' => "**Parallel Processing** The number of documents in each 'batch' allocated to a worker thread for processing",
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| 82 | 'type' => "int",
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| 83 | 'range' => "1,",
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| 84 | 'reqd' => "no",
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| 85 | 'hiddengli' => "yes" },
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| 86 | { 'name' => "nolocal",
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| 87 | 'desc' => "**Parallel Processing** Do not run any worker threads on the compute node running this import - for use on cluster or other multiple machine imports only",
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| 88 | 'type' => "flag",
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| 89 | 'reqd' => "no",
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| 90 | 'hiddengli' => "yes" },
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| 91 | { 'name' => "jobs",
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| 92 | 'desc' => "**Parallel Processing** Legacy support - see 'workers' above where workers equals jobs - 1",
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| 93 | 'type' => "int",
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| 94 | 'range' => "1,",
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| 95 | 'reqd' => "no",
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| 96 | 'internal' => "1",
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| 97 | 'hiddengli' => "yes" },
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| 98 | { 'name' => "epoch",
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| 99 | 'desc' => "**Parallel Processing** Legacy support - see 'batchsize' above",
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| 100 | 'type' => "int",
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| 101 | 'range' => "1,",
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| 102 | 'reqd' => "no",
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| 103 | 'internal' => "1",
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| 104 | 'hiddengli' => "yes" },
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| 105 | ];
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| 106 |
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[28770] | 107 |
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[27279] | 108 | # @function new()
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| 109 | # Constructor
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| 110 | #
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| 111 | sub new
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| 112 | {
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| 113 | my $class = shift(@_);
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| 114 | my $self = new inexport(@_);
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| 115 |
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[28770] | 116 | $start_time = [&gettimeofday()];
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| 117 |
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| 118 | # Legacy support - Dr Suleman initially had different names for these
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| 119 | # arguments, namely jobs and epoch
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[27279] | 120 | if ($self->{'workers'} eq '' && $self->{'jobs'} ne '')
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| 121 | {
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| 122 | $self->{'workers'} = $self->{'jobs'} - 1;
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| 123 | }
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| 124 | if ($self->{'batchsize'} eq '' && $self->{'epoch'} ne '')
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| 125 | {
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| 126 | $self->{'batchsize'} = $self->{'epoch'};
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| 127 | }
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| 128 |
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| 129 | # Sanity Check
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| 130 | if ($self->{'batchsize'} !~ /^\d+$/)
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| 131 | {
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[28770] | 132 | print STDERR "Warning! Batchsize missing or not a number - assuming batchsize = 1\n";
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[27279] | 133 | $self->{'batchsize'} = 1;
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| 134 | }
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| 135 | if ($self->{'workers'} !~ /^\d+$/ || $self->{'workers'} < 1)
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| 136 | {
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[28770] | 137 | print STDERR "Warning! Parallel processing not available with fewer than one worker - assuming serial import\n";
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[27279] | 138 | $self->{'workers'} = 0;
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| 139 | }
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| 140 | else
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| 141 | {
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[28770] | 142 | my $message = 'Performing Parallel Import';
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| 143 | print &makeHeader($message) . "\n";
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| 144 | print ' Started: ' . @{$start_time}[0] . '.' . @{$start_time}[1] . "\n";
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| 145 | print ' Workers: ' . $self->{'workers'} . "\n";
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| 146 | print ' Batchsize: ' . $self->{'batchsize'} . "\n";
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[28779] | 147 | print '=' x 80 . "\n";
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[27279] | 148 | if (!$self->{'removeold'})
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| 149 | {
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| 150 | print "WARNING: Parallel Processing requires -removeold. Current contents of archives directory will be deleted.\n";
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| 151 | sleep(3); #just in case
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| 152 | $self->{'removeold'} = 1;
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| 153 | }
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| 154 | }
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| 155 |
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| 156 | return bless($self, $class);
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| 157 | }
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| 158 | # new()
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| 159 |
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[28770] | 160 |
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[29257] | 161 | ## @function
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| 162 | #
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| 163 | sub set_collection_options
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| 164 | {
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| 165 | my $self = shift(@_);
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| 166 | my ($collectcfg) = @_;
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| 167 | $self->SUPER::set_collection_options($collectcfg);
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| 168 | $self->{'collectcfg'} = $collectcfg;
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| 169 | }
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| 170 | ## set_collection_options() ##
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| 171 |
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| 172 |
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[28770] | 173 | ## @function deinit()
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| 174 |
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| 175 |
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[27279] | 176 | # @function _farmOutProcesses()
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| 177 | # Index the files in parallel using MPI farmer to farm off multiple processes
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| 178 | # @author hs, 1 july 2010
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| 179 | #
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| 180 | sub _farmOutProcesses
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| 181 | {
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| 182 | my $self = shift(@_);
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| 183 | my ($workers, $batchsize, $importdir, $block_hash, $collection, $site) = @_;
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| 184 |
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| 185 | my $tmp_dir_path = &util::filename_cat($ENV{'GSDLCOLLECTDIR'}, 'tmp');
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| 186 | if (!-d $tmp_dir_path)
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| 187 | {
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| 188 | mkdir($tmp_dir_path, 0777);
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| 189 | }
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| 190 |
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| 191 | # create the list of files to import
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[29276] | 192 | my $filelist_start_time = [&gettimeofday()];
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[27279] | 193 | my $overwrite = 1;
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| 194 | my $tmp_filelist = &util::filename_cat($tmp_dir_path, "filelist.txt");
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| 195 | # - if the file is already there (which is should be during testing) then
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| 196 | # don't regenerate. This is especially important for imports of 1 million
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| 197 | # documents as just the directory scan can take several hours.
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| 198 | if ($overwrite || !-f $tmp_filelist)
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| 199 | {
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| 200 | open (my $filelist, ">$tmp_filelist");
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| 201 | my @filenames = keys %{$block_hash->{'all_files'}};
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| 202 | @filenames = shuffle(@filenames);
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| 203 | foreach my $filename (@filenames)
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| 204 | {
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| 205 | my $full_filename = &util::filename_cat($importdir,$filename);
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| 206 | if ((! exists $block_hash->{'file_blocks'}->{$full_filename}) && ($filename !~ m/metadata\.xml$/))
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| 207 | {
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| 208 | print $filelist "$filename\n";
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| 209 | }
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| 210 | }
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| 211 | close ($filelist);
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| 212 | }
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[29276] | 213 | my $filelist_end_time = [&gettimeofday()];
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| 214 | $filelist_duration = tv_interval($filelist_start_time, $filelist_end_time);
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[27279] | 215 |
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| 216 | # Determine if we've been provided a mpi.conf file to indicate the other
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| 217 | # machines (slave nodes) this parallizable process should run on
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| 218 | my $mpi_conf_path = &util::filename_cat($ENV{'GSDLCOLLECTDIR'}, 'mpi.conf');
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| 219 | my $mpi_flags = '';
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| 220 | if (-f $mpi_conf_path)
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| 221 | {
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| 222 | print STDERR " ***** CLUSTER MODE *****\n";
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| 223 | $mpi_flags .= '-machinefile "' . $mpi_conf_path . '" ';
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[29257] | 224 | $mpi_flags .= '-nolocal ';
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[27279] | 225 | }
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| 226 | else
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| 227 | {
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| 228 | print STDERR " ***** SINGLE COMPUTER MODE *****\n";
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| 229 | }
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| 230 | $mpi_flags .= ' --show-progress --timestamp-output --verbose';
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[29257] | 231 | # fix for mpi binding to incorrect interface device (seems to have an
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| 232 | # unhealthy obsession with virbr0)
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| 233 | $mpi_flags .= ' --mca btl tcp,sm,self --mca btl_tcp_if_include eth0 ';
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[27279] | 234 |
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| 235 | # invoke the farmer to start processing the files
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| 236 | my $gsdlhome;
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| 237 | if (defined $site && $site ne '')
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| 238 | {
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| 239 | $gsdlhome = $ENV{'GSDL3HOME'};
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| 240 | }
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| 241 | else
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| 242 | {
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| 243 | $site = "";
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| 244 | $gsdlhome = $ENV{'GSDLHOME'};
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| 245 | }
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| 246 |
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| 247 | # commands now assume path is correct to find this executables (as they
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| 248 | # will be under the new extensions framework)
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[28778] | 249 | my $farmer_exe = $gsdlhome . '/ext/parallel-building/' . $ENV{'GSDLOS'} . '/bin/mpiimport';
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[27279] | 250 |
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| 251 | my $mpi_cmd = 'mpirun ' . $mpi_flags . ' -n ' . ($workers + 1) . ' ' . $farmer_exe . ' ' . $tmp_filelist . ' ' . $batchsize . ' ' . $gsdlhome . ' ' . $collection . ' ' . $site;
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| 252 | print STDERR "MPI Command: \"" . $mpi_cmd . "\"\n";
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| 253 |
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| 254 | open(MPI, $mpi_cmd . " |") or die("Couldn't Execute MPI");
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| 255 | while ( defined( my $line = <MPI> ) )
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| 256 | {
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| 257 | chomp($line);
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| 258 | print "$line\n";
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| 259 | }
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| 260 | close(MPI);
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| 261 | }
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| 262 | # _farmOutProcesses()
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| 263 |
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[28770] | 264 |
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| 265 | ## @function getSupportedArguments()
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| 266 | #
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[27279] | 267 | # Retrieve the list of arguments that are specific to this subclass of inexport
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[28770] | 268 | # so they can be added to the list of supported arguments to import.pl. The use
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| 269 | # of any of these arguments automatically causes this subclass to be
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[27279] | 270 | # instantiated and used in preference to the parent class. ATM it is up to the
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| 271 | # implementer to ensure these arguments are unique.
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[28770] | 272 | #
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[27279] | 273 | sub getSupportedArguments
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| 274 | {
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| 275 | return $arguments;
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| 276 | }
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[28770] | 277 | ## getSupportedArguments() ##
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[27279] | 278 |
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[28770] | 279 |
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[27279] | 280 | ################################################################################
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| 281 | ##### Overrides
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| 282 | ################################################################################
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| 283 |
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[27995] | 284 |
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| 285 | ## @function perform_process_files()
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[27279] | 286 | #
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| 287 | sub perform_process_files
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| 288 | {
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| 289 | my $self = shift(@_);
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| 290 | my ($manifest, $pluginfo, $importdir, $file_to_import, $block_hash, $metadata, $processor, $maxdocs) = @_;
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| 291 | my $batchsize = $self->{'batchsize'};
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| 292 | my $collection = $self->{'collection'};
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| 293 | my $site = $self->{'site'};
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| 294 | my $workers = $self->{'workers'};
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| 295 |
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| 296 | # Parallel Import
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| 297 | if ($workers > 0)
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| 298 | {
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| 299 | # Call the function written by HS
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| 300 | $self->_farmOutProcesses($workers, $batchsize, $importdir, $block_hash, $collection, $site);
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| 301 | }
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| 302 | # Serial import
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| 303 | else
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| 304 | {
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| 305 | $self->SUPER::perform_process_files($manifest, $pluginfo, $importdir, $file_to_import, $block_hash, $metadata, $processor, $maxdocs);
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| 306 | }
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[29257] | 307 |
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| 308 | # the individual parts into one single database
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| 309 | my $infodb_type = $self->{'collectcfg'}->{'infodbtype'};
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| 310 | my $mpi_conf_path = &util::filename_cat($ENV{'GSDLCOLLECTDIR'}, 'mpi.conf');
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| 311 | if ( -f $mpi_conf_path && &dbutil::supportsMerge($infodb_type) )
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| 312 | {
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| 313 | print STDERR ' * Merging ' . $infodb_type . ' databases... ';
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| 314 | my @databases = ('archiveinf-src','archiveinf-doc');
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| 315 | foreach my $database (@databases)
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| 316 | {
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| 317 | # generate the path to the target database without any hostname suffix
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| 318 | my $archive_db_path = &dbutil::get_infodb_file_path($infodb_type, $database, $self->{'archivedir'}, 0, '');
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| 319 | #rint STDERR " - merging to: " . $archive_db_path . "\n";
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| 320 | open(MPIHOSTS, '<:utf8', $mpi_conf_path) or die("Failed to open mpi.conf for reading");
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| 321 | my $line;
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| 322 | while ($line = <MPIHOSTS>)
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| 323 | {
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| 324 | if ($line =~ /^([a-z0-9\-]+)/i)
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| 325 | {
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| 326 | my $hostname = $1;
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| 327 | ###rint STDERR " - searching for database for: " . $hostname . "\n";
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| 328 | my $mergable_db_path = &dbutil::get_infodb_file_path($infodb_type, $database, $self->{'archivedir'}, 0, $hostname);
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| 329 | ###rint STDERR "[debug] " . $mergable_db_path . "\n";
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| 330 | if (-f $mergable_db_path)
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| 331 | {
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| 332 | ###rint STDERR " - merge $mergable_db_path > $archive_db_path\n";
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| 333 | &dbutil::merge_databases($infodb_type, $mergable_db_path, $archive_db_path);
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| 334 | }
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| 335 | }
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| 336 | }
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| 337 | close(MPIHOSTS);
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| 338 | }
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| 339 | print "Done!\n";
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| 340 | }
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| 341 |
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[27279] | 342 | }
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[27995] | 343 | ## perform_process_files() ##
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[27279] | 344 |
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[27995] | 345 | ## @function generate_statistics()
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| 346 | #
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| 347 | # Write out import stats - only output statistics if there are multiple jobs
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[27279] | 348 | # @author hs, 1 july 2010
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[27995] | 349 | #
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[27279] | 350 | sub generate_statistics
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| 351 | {
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| 352 | my $self = shift @_;
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| 353 | my ($pluginfo) = @_;
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| 354 |
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| 355 | my $inexport_mode = $self->{'mode'};
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| 356 |
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| 357 | my $statsfile = $self->{'statsfile'};
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| 358 | my $out = $self->{'out'};
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| 359 | my $faillogname = $self->{'faillogname'};
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| 360 | my $gli = $self->{'gli'};
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| 361 |
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| 362 | my $close_stats = 0;
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| 363 | # Child processes should have been sent to file, only the parent process
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| 364 | # should be writing to STD*.
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| 365 | if ($statsfile !~ /^(STDERR|STDOUT)$/i)
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| 366 | {
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| 367 | if (open (STATS, ">$statsfile"))
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| 368 | {
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| 369 | $statsfile = 'inexport::STATS';
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| 370 | $close_stats = 1;
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| 371 | }
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| 372 | else
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| 373 | {
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| 374 | &gsprintf($out, "{import.cannot_open_stats_file}", $statsfile);
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| 375 | &gsprintf($out, "{import.stats_backup}\n");
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| 376 | $statsfile = 'STDERR';
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| 377 | }
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| 378 | }
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| 379 | # Master thread. In the future I should do something smarter here, like read
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| 380 | # in the stats from all the worker threads stat files, add them up, then
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| 381 | # create a dummy plugin object and add it to pluginfo. Otherwise the results
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| 382 | # always show 0 documents considered and 0 included...
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| 383 | else
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| 384 | {
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| 385 |
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| 386 | }
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| 387 |
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| 388 | &gsprintf($out, "\n");
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| 389 | &gsprintf($out, "*********************************************\n");
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| 390 | &gsprintf($out, "{$inexport_mode.complete}\n");
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| 391 | &gsprintf($out, "*********************************************\n");
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| 392 |
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| 393 | # ... but for now just comment this out
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| 394 | #&plugin::write_stats($pluginfo, $statsfile, $faillogname, $gli);
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| 395 | &gsprintf($out, "* Review gsimport-W*.log files for any warnings and errors\n");
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| 396 |
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| 397 | if ($close_stats)
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| 398 | {
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| 399 | close STATS;
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| 400 | }
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| 401 | }
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[27995] | 402 | ## generate_statistics() ##
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[27279] | 403 |
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[28001] | 404 |
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[28770] | 405 | ## @function makeHeader($msg, [$length])
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| 406 | #
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| 407 | # Create a centered header string given a certain message padded with '=' characters.
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| 408 | #
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| 409 | # @param $msg The message to center as a string
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[28779] | 410 | # @param $length The desired length of string - defaults to 80
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[28770] | 411 | # @return A string centered with '=' as padding
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| 412 | #
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| 413 | sub makeHeader
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| 414 | {
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| 415 | my ($msg, $length) = @_;
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| 416 | if (!defined $length)
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| 417 | {
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[28779] | 418 | $length = 80;
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[28770] | 419 | }
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| 420 | my $filler_length = ($length - 2 - length($msg)) / 2;
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| 421 | my $filler = '=' x $filler_length;
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[28779] | 422 | if (length($msg) % 2 == 1)
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[28770] | 423 | {
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| 424 | $msg = $filler . ' ' . $msg . ' =' . $filler;
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| 425 | }
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| 426 | else
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| 427 | {
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| 428 | $msg = $filler . ' ' . $msg . ' ' . $filler;
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| 429 | }
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| 430 | return $msg;
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| 431 | }
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| 432 | ## makeHeader() ##
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[27279] | 433 | 1;
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