source: gsdl/trunk/bin/script/explode_metadata_database.pl@ 18301

Last change on this file since 18301 was 18301, checked in by mdewsnip, 15 years ago

Fixed bug regarding square brackets in exploded metadata values. These were left as '/' in the metadata.xml files, meaning that they couldn't be edited in the GLI, and wouldn't display in Greenstone. Now these are converted to "[" and "]".

  • Property svn:executable set to *
  • Property svn:keywords set to Author Date Id Revision
File size: 16.4 KB
RevLine 
[15074]1#!/usr/bin/perl -w
[8858]2
3
4BEGIN {
5 die "GSDLHOME not set\n" unless defined $ENV{'GSDLHOME'};
6 unshift (@INC, "$ENV{'GSDLHOME'}/perllib");
7 unshift (@INC, "$ENV{'GSDLHOME'}/perllib/plugins");
8}
9
[10338]10use strict;
11no strict 'subs'; # allow barewords (eg STDERR) as function arguments
12no strict 'refs'; # allow filehandles to be variables and vice versa
[10999]13
14use encodings;
[10338]15use printusage;
16use parse2;
[16968]17use colcfg;
18
[12290]19use FileHandle;
[8858]20
[16790]21use File::Spec;
22use File::Basename;
23
[9121]24my $unicode_list =
25 [ { 'name' => "auto",
[17199]26 'desc' => "{ReadTextFile.input_encoding.auto}" },
[9121]27 { 'name' => "ascii",
[17199]28 'desc' => "{BasePlugin.encoding.ascii}" },
[9121]29 { 'name' => "utf8",
[17199]30 'desc' => "{BasePlugin.encoding.utf8}" },
[9121]31 { 'name' => "unicode",
[17199]32 'desc' => "{BasePlugin.encoding.unicode}" } ];
[8858]33
[10999]34my $e = $encodings::encodings;
35foreach my $enc (sort {$e->{$a}->{'name'} cmp $e->{$b}->{'name'}} keys (%$e))
36{
37 my $hashEncode =
38 {'name' => $enc,
39 'desc' => $e->{$enc}->{'name'}};
40
41 push(@{$unicode_list},$hashEncode);
42}
43
[9041]44my $arguments =
[10338]45 [
[10470]46 { 'name' => "language",
47 'desc' => "{scripts.language}",
48 'type' => "string",
[10471]49 'reqd' => "no",
50 'hiddengli' => "yes" },
[10338]51 { 'name' => "plugin",
52 'desc' => "{explode.plugin}",
53 'type' => "string",
54 'reqd' => "yes",
55 'hiddengli' => "yes"},
56 { 'name' => "input_encoding",
[9041]57 'desc' => "{explode.encoding}",
[9121]58 'type' => "enum",
[9147]59 'deft' => "auto",
[9121]60 'list' => $unicode_list,
[9147]61 'reqd' => "no" },
[9041]62 { 'name' => "metadata_set",
63 'desc' => "{explode.metadata_set}",
64 'type' => "string",
[11342]65 'reqd' => "no" },
[9147]66 { 'name' => "document_field",
67 'desc' => "{explode.document_field}",
68 'type' => "string",
69 'reqd' => "no"},
70 { 'name' => "document_prefix",
71 'desc' => "{explode.document_prefix}",
72 'type' => "string",
73 'reqd' => "no"},
74 { 'name' => "document_suffix",
75 'desc' => "{explode.document_suffix}",
76 'type' => "string",
77 'reqd' => "no"},
[12706]78 { 'name' => "records_per_folder",
79 'desc' => "{explode.records_per_folder}",
80 'type' => "int",
81 'range' => "0,",
82 'deft' => "100",
83 'reqd' => "no" },
[16968]84 { 'name' => "plugin_options",
[17037]85 'desc' => "{explode.plugin_options}",
[16968]86 'type' => "string",
87 'reqd' => "no",
88 'modegli' => "3"},
89 { 'name' => "collection",
[17037]90 'desc' => "{explode.collection}",
[16968]91 'type' => "string",
92 'reqd' => "no",
[17037]93 'hiddengli' => "yes"},
[10338]94 { 'name' => "verbosity",
95 'desc' => "{import.verbosity}",
96 'type' => "int",
97 'range' => "0,",
98 'deft' => "1",
99 'reqd' => "no",
100 'modegli' => "4" },
101 { 'name' => "xml",
102 'desc' => "",
103 'type' => "flag",
104 'reqd' => "no",
105 'hiddengli' => "yes" }
[9041]106 ];
107
108my $options = { 'name' => "explode_metadata_database.pl",
109 'desc' => "{explode.desc}",
110 'args' => $arguments };
[8858]111
[16790]112
113
[8858]114sub main
115{
[11350]116 my ($language, $input_encoding, $metadata_set, $plugin,
[16968]117 $document_field, $document_prefix, $document_suffix, $records_per_folder, $plugin_options, $collection, $verbosity);
[9041]118
[9147]119 my $xml = 0;
[10338]120
121 my $hashParsingResult = {};
122 # parse the options
123 my $intArgLeftinAfterParsing = parse2::parse(\@ARGV,$arguments,$hashParsingResult,"allow_extra_options");
124
[12545]125 # If parse returns -1 then something has gone wrong
126 if ($intArgLeftinAfterParsing == -1)
127 {
128 &PrintUsage::print_txt_usage($options, "{explode.params}");
129 die "\n";
130 }
131
[10338]132 foreach my $strVariable (keys %$hashParsingResult)
133 {
134 eval "\$$strVariable = \$hashParsingResult->{\"\$strVariable\"}";
135 }
[10470]136
[9147]137 # If $language has been specified, load the appropriate resource bundle
138 # (Otherwise, the default resource bundle will be loaded automatically)
[10338]139 if ($language && $language =~ /\S/) {
[9147]140 &gsprintf::load_language_specific_resource_bundle($language);
141 }
[8858]142
[9147]143 if ($xml) {
144 &PrintUsage::print_xml_usage($options);
145 print "\n";
146 return;
147 }
148
[16790]149
[12545]150 # There should one arg left after parsing (the filename)
151 # Or the user may have specified -h, in which case we output the usage
152 if($intArgLeftinAfterParsing != 1 || (@ARGV && $ARGV[0] =~ /^\-+h/))
[10470]153 {
154 &PrintUsage::print_txt_usage($options, "{explode.params}");
155 die "\n";
156 }
157
[8858]158 # The metadata database filename is the first value that remains after the options have been parsed out
159 my $filename = $ARGV[0];
[9041]160 if (!defined $filename || $filename !~ /\w/) {
161 &PrintUsage::print_txt_usage($options, "{explode.params}");
162 print STDERR "You need to specify a filename";
163 die "\n";
164 }
165 # check that file exists
166 if (!-e $filename) {
167 print STDERR "File $filename doesn't exist...\n";
168 die "\n";
169 }
170 # check required options
171 if (!defined $plugin || $plugin !~ /\w/) {
172 &PrintUsage::print_txt_usage($options, "{explode.params}");
173 print STDERR "You need to specify a plugin";
174 die "\n";
175 }
176
177 # check metadata set
178 if (defined $metadata_set && $metadata_set =~ /\w/) {
179 $metadata_set .= ".";
180 } else {
181 $metadata_set = "";
182 }
[16968]183 if (defined $collection && $collection =~ /\w/) {
184 if (($collection = &colcfg::use_collection("", $collection, "")) eq "") {
185 print STDERR "Collection $collection does not exist\n";
186 die "\n";
187 }
188 }
189
[8858]190 my $plugobj;
191 require "$plugin.pm";
192
[16968]193 if (defined $plugin_options && $plugin_options =~ /\w/) {
194 my @options = split(/\s/, $plugin_options);
195 map { $_ = "\"$_\"" unless $_ =~ /^\"/; } @options;
196 $plugin_options = join (",", @options);
197 eval ("\$plugobj = new $plugin([], [$plugin_options])");
198 die "$@" if $@;
199 } else {
200 eval ("\$plugobj = new $plugin()");
201 die "$@" if $@;
202 }
[8858]203 # ...and initialize it
[16968]204 $plugobj->init($verbosity, "STDERR", "STDERR");
205
[10338]206 if ($input_encoding eq "auto") {
207 ($language, $input_encoding) = $plugobj->textcat_get_language_encoding ($filename);
[16968]208 }
[12873]209
[8858]210 # Create a directory to store the document files...
[16790]211 my ($exploded_base_dir) = ($filename =~ /(.*)\.[^\.]+$/);
[8858]212
[16790]213 my $orig_base_dir = &File::Basename::dirname($filename);
214
215
[8858]216 my $split_exp = $plugobj->{'split_exp'};
[16790]217 if (defined $split_exp) {
218 # Read in file, and then split and process individual records
[8858]219
[16790]220 my $text = "";
221 # Use the plugin's read_file function to avoid duplicating code
222 $plugobj->read_file($filename, $input_encoding, undef, \$text);
223 # is there any text in the file??
224 die "\n" unless length($text);
[12706]225
[16790]226 # Split the text into records, using the plugin's split_exp
[12706]227
[16790]228 my @metadata_records = split(/$split_exp/, $text);
[17318]229 my $total_num_records = scalar(@metadata_records);
230 print STDERR "Number of records: $total_num_records\n";
[16790]231
232 # Write the metadata from each record to the metadata.xml file
233 my $record_number = 1;
[16968]234 my $documents_directory;
[16790]235 foreach my $record_text (@metadata_records) {
236
237 # Check if we need to start a new directory for these records
[17318]238 check_need_new_directory($exploded_base_dir,$record_number,
239 $records_per_folder,$total_num_records,
240 \$documents_directory);
[16790]241 # Use the plugin's process function to avoid duplicating code
242 my $doc_obj = new doc($filename, "nonindexed_doc");
243 $plugobj->process(\$record_text, undef, undef, $filename, undef, $doc_obj, 0);
244
245
246 # Try to get a doc to attach the metadata to
247 # If no match found, create a dummy .nul file
[16968]248 attach_metadata_or_make_nul_doc($document_field, $doc_obj, $record_number,
[16790]249 $documents_directory, $orig_base_dir,
250 $document_prefix, $document_suffix, $metadata_set, $verbosity);
251
252
[17318]253 check_close_directory($record_number,$records_per_folder,$total_num_records);
[16790]254
255 $record_number = $record_number + 1;
[12706]256 }
[16790]257 }
258 else {
[17318]259 # Call metadata_read to set up associated metadata
[12706]260
[16790]261 my $pluginfo = undef;
[17217]262 my $block_hash = {};
[16790]263
264 my $processor = undef;
265 my $maxdocs = undef;
266 my $gli = undef;
267
[17318]268 my $extrametakeys = [];
[16790]269 my $extrametadata = {};
270
271
[17301]272 $plugobj->metadata_read($pluginfo, "", $filename, $block_hash,
[16790]273 $extrametakeys, $extrametadata, $processor, $maxdocs, $gli);
274
[17318]275 my $total_num_records = scalar (@$extrametakeys);
276 print STDERR "Number of records: $total_num_records\n";
277 my $record_number = 1;
278 my $documents_directory;
279 foreach my $record (@$extrametakeys) {
280 &check_need_new_directory($exploded_base_dir, $record_number, $records_per_folder, $total_num_records, \$documents_directory);
281
282 # Attach metadata to object
283 # => use the plugin's extra_metadata function to avoid duplicating code
284 my $doc_obj = new doc($filename, "nonindexed_doc");
285 # all the metadata has been extracted into extrametadata
286 $plugobj->extra_metadata ($doc_obj, $doc_obj->get_top_section(), $extrametadata->{$record});
[16790]287
[17318]288 # Try to get a doc to attach the metadata to
289 # If no match found, create a dummy .nul file
290 attach_metadata_or_make_nul_doc($document_field, $doc_obj, $record_number, $documents_directory, $orig_base_dir, $document_prefix, $document_suffix, $metadata_set, $verbosity);
291
292 &check_close_directory($record_number,$records_per_folder,$total_num_records);
293
294 $record_number = $record_number + 1;
[16790]295
[17318]296 }
[16790]297 }
298
299 # Explode means just that: the original file is deleted
300 &util::rm($filename);
301 $plugobj->clean_up_after_exploding();
302
303}
304
305
306sub need_new_directory
307{
308 my ($exploded_base_dir) = @_;
309
310 my $documents_directory = $exploded_base_dir;
311
312 if (-d $documents_directory) {
313 die "Error: document directory $documents_directory already exists (bailing).\n";
314 }
315 &util::mk_dir($documents_directory);
316
317 my $documents_metadata_xml_file = &util::filename_cat($documents_directory, "metadata.xml");
318 if (-e $documents_metadata_xml_file) {
319 die "Error: documents metadata.xml file $documents_metadata_xml_file already exists (bailing).\n";
320 }
321
322 # Start the metadata.xml file
323 open(METADATA_XML_FILE, ">$documents_metadata_xml_file");
324 print METADATA_XML_FILE
325 "<?xml version=\"1.0\" encoding=\"UTF-8\" standalone=\"no\"?>\n" .
326 "<!DOCTYPE DirectoryMetadata SYSTEM \"http://greenstone.org/dtd/DirectoryMetadata/1.0/DirectoryMetadata.dtd\">\n" .
327 "<DirectoryMetadata>\n";
328
329 return $documents_directory;
330}
331
332sub check_need_new_directory
333{
[17318]334 my ($exploded_base_dir,$record_number, $records_per_folder,
335 $total_num_records, $documents_dir_ref) = @_;
[16790]336
337
338 # Check if we need to start a new directory for these records
339 if (($record_number % $records_per_folder) == 1) {
340 my $documents_directory = $exploded_base_dir;
341
[17318]342 if ($total_num_records > $records_per_folder) {
[16790]343 $documents_directory .= "." . sprintf("%8.8d", $record_number);
344 }
345
346 $$documents_dir_ref = need_new_directory($documents_directory);
347 }
348}
349
350
351
352
353
354sub attach_metadata_or_make_nul_doc
355{
356 my ($document_field, $doc_obj, $record_number,
357 $documents_directory, $orig_base_dir,
358 $document_prefix, $document_suffix, $metadata_set, $verbosity) = @_;
359
360 my $record_metadata = $doc_obj->get_all_metadata($doc_obj->get_top_section());
361 my $document_file;
362
363 # try to get a doc to attach the metadata to
364 if (defined $document_field) {
365 foreach my $pair (@$record_metadata) {
366 my ($field, $value) = (@$pair);
367
368 $value =~ s/\\\\/\\/g;
369
370 # Does this metadata element specify a document to obtain?
371 if ($field eq $document_field) {
372 my $document_file_full = $document_prefix . $value . $document_suffix;
373
[17318]374 # this either downloads/copies the document, or creates a nul file for it.
[16790]375 $document_file = &obtain_document($document_file_full, $documents_directory, $orig_base_dir, $verbosity);
376 &write_metadata_xml_file_entry(METADATA_XML_FILE, $document_file, $record_metadata, $metadata_set);
[9147]377 }
378 }
[17318]379 }
[16790]380
[17318]381 # Create a dummy .nul file if we haven't obtained a document (or null file) for this record
[16790]382 if (not defined $document_file) {
383
384 if (defined ($record_number)) {
[11705]385 $document_file = sprintf("%8.8d", $record_number) . ".nul";
[9041]386 }
[16790]387 else {
388 $document_file = "doc.nul";
389 }
390 open(DUMMY_FILE, ">$documents_directory/$document_file");
391 close(DUMMY_FILE);
392 &write_metadata_xml_file_entry(METADATA_XML_FILE, $document_file, $record_metadata, $metadata_set);
[8858]393 }
394
395}
396
[16790]397sub close_directory
398{
399 # Finish and close the metadata.xml file
400 print METADATA_XML_FILE "\n</DirectoryMetadata>\n";
401 close(METADATA_XML_FILE);
[8858]402
[16790]403}
404
405
406sub check_close_directory
407{
[17318]408 my ($record_number,$records_per_folder,$total_num_records) = @_;
[16790]409
[17318]410 if (($record_number % $records_per_folder) == 0 || $record_number == $total_num_records) {
[16790]411 # Finish and close the metadata.xml file
412 close_directory();
413 }
414}
415
416
417
[8858]418sub write_metadata_xml_file_entry
419{
420 my $metadata_xml_file = shift(@_);
421 my $file_name = shift(@_);
422 my $record_metadata = shift(@_);
[9041]423 my $meta_prefix = shift(@_);
424
[8858]425 # Make $file_name XML-safe
[12878]426 $file_name =~ s/&/&amp;/g;
[8858]427 $file_name =~ s/</&lt;/g;
428 $file_name =~ s/>/&gt;/g;
429
430 # Convert $file_name into a regular expression that matches it
431 $file_name =~ s/\./\\\./g;
432 $file_name =~ s/\(/\\\(/g;
433 $file_name =~ s/\)/\\\)/g;
434 $file_name =~ s/\{/\\\{/g;
435 $file_name =~ s/\}/\\\}/g;
436 $file_name =~ s/\[/\\\[/g;
437 $file_name =~ s/\]/\\\]/g;
[9119]438
[8858]439 print $metadata_xml_file
440 "\n" .
441 " <FileSet>\n" .
442 " <FileName>$file_name</FileName>\n" .
443 " <Description>\n";
444
445 foreach my $pair (@$record_metadata) {
446 my ($field, $value) = (@$pair);
447
448 # We're only interested in metadata from the database
449 next if ($field eq "lastmodified");
450 next if ($field eq "gsdlsourcefilename");
451 next if ($field eq "gsdldoctype");
452 next if ($field eq "FileFormat");
453
454 # Ignore the ^all metadata, since it will be invalid if the source metadata is changed
455 next if ($field =~ /\^all$/); # ISISPlug specific!
456
[18301]457 # Square brackets in metadata values need to be escaped so they don't confuse Greenstone/GLI
458 $value =~ s/\[/&\#091;/g;
459 $value =~ s/\]/&\#093;/g;
460
[8858]461 # Make $value XML-safe
[11238]462 $value =~ s/&/&amp;/g; # May mess up existing entities!
[8858]463 $value =~ s/</&lt;/g;
464 $value =~ s/>/&gt;/g;
465
[9119]466 # we are not allowed & in xml except in entities.
467 # if there are undefined entities then parsing will also crap out.
468 # should we be checking for them too?
469 # this may not get all possibilities
[11238]470 # $value =~ s/&([^;\s]*(\s|$))/&amp;$1/g;
[9119]471
[17598]472 # do we already have a namespace specified?
473 my $full_field = $field;
474 if ($meta_prefix ne "") {
475 $full_field =~ s/^\w+\.//;
476 $full_field = $meta_prefix.$full_field;
477 }
478
479 print $metadata_xml_file " <Metadata mode=\"accumulate\" name=\"$full_field\">$value</Metadata>\n";
[8858]480 }
481
482 print $metadata_xml_file
483 " </Description>\n" .
484 " </FileSet>\n";
485}
486
[9147]487sub obtain_document
488{
[16790]489 my ($document_file_full,$documents_directory,$orig_base_dir,$verbosity) = @_;
[10338]490
491 print STDERR "Obtaining document file $document_file_full...\n" if ($verbosity > 1);
[8858]492
[9147]493 my $document_file_name;
494 my $local_document_file;
495
496 # Document specified is on the web
[16790]497 if ($document_file_full =~ /^https?:/ || $document_file_full =~ /^ftp:/) {
[9147]498 $document_file_full =~ /([^\/]+)$/;
499 $document_file_name = $1;
500 $local_document_file = &util::filename_cat($documents_directory, $document_file_name);
501
502 my $wget_options = "--quiet";
[10338]503 $wget_options = "--verbose" if ($verbosity > 2);
[9147]504 $wget_options .= " --timestamping"; # Only re-download files if they're newer
[13166]505 my $wget_command = "wget $wget_options \"$document_file_full\" --output-document \"$local_document_file\"";
506 `$wget_command`;
[11348]507
508 # Check the document was obtained successfully
509 if (!-e $local_document_file) {
510 print STDERR "WARNING: Could not obtain document file $document_file_full\n";
511 }
[9147]512 }
513 # Document specified is on the disk
514 else {
515 my $dir_sep = &util::get_os_dirsep();
[16790]516
517 $document_file_full =~ m/(.+$dir_sep)?(.*)$/;
[9147]518 $document_file_name = $2;
[16790]519
520
521 my $is_absolute = File::Spec->file_name_is_absolute($document_file_full);
522 print STDERR "doc file full = $document_file_full\n";
523
524 if (!$is_absolute) {
525 $document_file_full
526 = &util::filename_cat($orig_base_dir,$document_file_full);
527 }
528
[9147]529 $local_document_file = &util::filename_cat($documents_directory, $document_file_name);
530
[17318]531 if (-e $document_file_full) {
532 &util::cp($document_file_full, $documents_directory);
533 }
534
[16790]535 # Check the document was obtained successfully
536 if (!-e $local_document_file) {
537 print STDERR "WARNING: Could not obtain document file $document_file_full\n";
538 }
539 else {
[17563]540 $orig_base_dir =~ s/\\/\\\\/g; # escape windows style slashes for the regex below
[16790]541 if ($document_file_full =~ m/^$orig_base_dir.*/) {
542 # file local to metadata record
543 # => copy has been made successfully, so remove original
544 &util::rm($document_file_full);
[11348]545 }
546 }
[9147]547 }
548
[11348]549 # If the document wasn't obtained successfully, create a .nul file for it
[9147]550 if (!-e $local_document_file) {
[11302]551 $document_file_name .= ".nul";
552 open(NULL_FILE, ">$local_document_file.nul");
553 close(NULL_FILE);
[17318]554 print STDERR "Creating a nul document $document_file_name\n";
[9147]555 }
556
557 return $document_file_name;
558}
559
[8858]560&main(@ARGV);
[16790]561
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