source: main/trunk/greenstone2/perllib/gssql.pm@ 32580

Last change on this file since 32580 was 32580, checked in by ak19, 5 years ago
  1. support for port param when connecting to SQL DB. 2. GS SQL Plugout now also uses the verbosity member variable when instantiating the gssql object. 3. Since the DBI object has PrintError set to 1 on connection (and ShowErrorStatement set to 1 to for more verbosity), which means an informative message is always printed on error or warning, there's no need for me to right warning statements everywhere when a db statement/call fails. Removed these redundant warnings. 4. Don't want GS XML Plugout's debug outhandle passed to the two gssql::insert methods, as we don't want them to write debug information to the debug handle. That should only be for the XML stuff (whether groups on or not), and the debug outhandle can moreover be set to the XSLT writer, concerning which makes it makes even less sense for gssql to output info and error debug statements into there. gssql now sticks to STDERR for debug information.
File size: 28.4 KB
RevLine 
[32529]1###########################################################################
2#
[32530]3# gssql.pm -- DBI for SQL related utility functions used by
4# GreenstoneSQLPlugout and hereafter by GreenstoneSQLPlugin too.
[32529]5# A component of the Greenstone digital library software
6# from the New Zealand Digital Library Project at the
7# University of Waikato, New Zealand.
8#
9# Copyright (C) 1999 New Zealand Digital Library Project
10#
11# This program is free software; you can redistribute it and/or modify
12# it under the terms of the GNU General Public License as published by
13# the Free Software Foundation; either version 2 of the License, or
14# (at your option) any later version.
15#
16# This program is distributed in the hope that it will be useful,
17# but WITHOUT ANY WARRANTY; without even the implied warranty of
18# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
19# GNU General Public License for more details.
20#
21# You should have received a copy of the GNU General Public License
22# along with this program; if not, write to the Free Software
23# Foundation, Inc., 675 Mass Ave, Cambridge, MA 02139, USA.
24#
25###########################################################################
26
27package gssql;
28
29use strict;
30no strict 'refs';
31no strict 'subs';
32
[32536]33use DBI; # the central package for this module used by GreenstoneSQL Plugout and Plugin
[32529]34
[32580]35##############################
36
37# TODO: add infrastructure for db_port, AutoCommit etc
38# For port, see https://stackoverflow.com/questions/2248665/perl-script-to-connect-to-mysql-server-port-3307
39
40# + TODO: remove unnecessary warn() since PrintError is active
41# https://perldoc.perl.org/perlobj.html#Destructors
42
43# TODO: drop table if exists and create table if exists are available in MySQL. Use those cmds
44# instead of always first checking for existence ourselves?
45##############################
46
[32578]47# singleton connection
48my $_dbh_instance = undef; # calls undef() function. See https://perlmaven.com/undef-and-defined-in-perl
49my $ref_count = 0;
50
[32529]51# Need params_map keys:
52# - collection_name
[32530]53# - db_encoding (db content encoding) - MySQL can set this at server, db, table levels. For MySQL
54# we set the enc during connect at server level. Not sure whether other DB's support it at the
55# same levels.
56
57# For connection to MySQL, need:
[32529]58# - db_driver, db_client_user, db_client_pwd, db_host, (db_port not used at present)
[32530]59# So these will be parameterised, but in a hashmap, for just the connect method.
60
61# Parameterise (one or more methods may use them):
62# - db_name (which is the GS3 sitename)
63
[32529]64sub new
[32561]65{
[32529]66 my $class = shift(@_);
67
68 my ($params_map) = @_;
69
70 # library_url: to be specified on the cmdline if not using a GS-included web server
71 # the GSDL_LIBRARY_URL env var is useful when running cmdline buildcol.pl in the linux package manager versions of GS3
72
[32531]73 # https://stackoverflow.com/questions/7083453/copying-a-hashref-in-perl
74 # Making a shallow copy works, and can handle unknown params:
75 #my $self = $params_map;
[32529]76
[32531]77 # but being explicit for class params needed for MySQL:
78 my $self = {
79 'collection_name' => $params_map->{'collection_name'},
[32560]80 'verbosity' => $params_map->{'verbosity'} || 1
[32531]81 };
82
[32559]83 # The db_encoding option is presently not passed in to this constructor as parameter.
84 # Placed here to indicate it's sort of optional.
85 # Since docxml are all in utf8, the contents of the GS SQL database should be too,
86 # So making utf8 the hidden default at present.
87 $self->{'db_encoding'} = $params_map->{'db_encoding'} || "utf8";
88
[32561]89 $self = bless($self, $class);
90
91 $self->{'tablename_prefix'} = $self->sanitize_name($params_map->{'collection_name'});
92
93 return $self;
[32529]94}
95
96
[32578]97
[32529]98#################################
99
100# Database access related functions
101# http://g2pc1.bu.edu/~qzpeng/manual/MySQL%20Commands.htm
102# https://www.guru99.com/insert-into.html
103
104# TODO Q: What on cancelling a build: delete table? But what if it was a rebuild and the rebuild is cancelled (not the original build)?
105# Do we create a copy of the orig database as backup, then start populating current db, and if cancelled, delete current db and RENAME backup table to current?
106# https://stackoverflow.com/questions/3280006/duplicating-a-mysql-table-indexes-and-data
107# BUT what if the table is HUGE? (Think of a collection with millions of docs.) Huge overhead in copying?
108# The alternative is we just quit on cancel, but then: cancel could leave the table in a partial committed state, with no way of rolling back.
109# Unless they do a full rebuild, which will recreate the table from scratch?
110# SOLUTION-> rollback transaction on error, see https://www.effectiveperlprogramming.com/2010/07/set-custom-dbi-error-handlers/
111# But then should set AutoCommit to off on connection, and remember to commit every time
112
113#################
114# Database functions that use the perl DBI module (with the DBD driver module for mysql)
115#################
116
[32538]117################### BASIC DB OPERATIONS ##################
118
[32529]119# THE NEW DB FUNCTIONS
120# NOTE: FULLTEXT is a reserved keyword in (My)SQL. So we can't name a table or any of its columns "fulltext".
121# https://dev.mysql.com/doc/refman/5.5/en/keywords.html
122
123# TODO: Consider AutoCommit status (and Autocommit off allowing commit or rollback for GS coll build cancel) later
124
[32578]125
126
127# SINGLETON / GET INSTANCE PATTERN
128# https://stackoverflow.com/questions/16655603/perl-objects-class-variable-initialization
129# https://stackoverflow.com/questions/7587157/how-can-i-set-a-static-variable-that-can-be-accessed-by-all-subclasses-of-the-sa
130# Singleton without Moose: https://www.perl.com/article/52/2013/12/11/Implementing-the-singleton-pattern-in-Perl/
131
132sub connect_to_db
133{
[32529]134 my $self= shift (@_);
[32530]135 my ($params_map) = @_;
[32578]136
137 $params_map->{'db_encoding'} = $self->{'db_encoding'};
138 $params_map->{'verbosity'} = $self->{'verbosity'};
139
140 $self->{'db_handle'} = &_get_connection_instance($params_map); # getting singleton (class method)
141 if($self->{'db_handle'}) {
142 $ref_count++; # if successful, keep track of the number of refs to the single db connection
143 return $self->{'db_handle'};
144 }
145 return undef;
146}
147
148# SINGLETON METHOD #
149# TODO: where should the defaults for these params be, here or in GS-SQLPlugin/Plugout?
150sub _get_connection_instance
151{
152 #my $self= shift (@_); # singleton method doesn't use self, but callers don't need to know that
153 my ($params_map) = @_;
154
155 return $_dbh_instance if($_dbh_instance);
156
157 # or make the connection
158
[32559]159 # For proper utf8 support in MySQL, encoding should be 'utf8mb4' as 'utf8' is insufficient
[32578]160 my $db_enc = "utf8mb4" if $params_map->{'db_encoding'} eq "utf8";
[32529]161
[32530]162 # these are the params for connecting to MySQL
163 my $db_driver = $params_map->{'db_driver'} || "mysql";
164 my $db_user = $params_map->{'db_client_user'} || "root";
[32580]165 my $db_pwd = $params_map->{'db_client_pwd'}; # even if undef and password was necessary,
166 # we'll see a sensible error message when connect fails
[32530]167 my $db_host = $params_map->{'db_host'} || "127.0.0.1";
[32580]168 # localhost doesn't work for us, but 127.0.0.1 works
169 # https://metacpan.org/pod/DBD::mysql
170 # "The hostname, if not specified or specified as '' or 'localhost', will default to a MySQL server
171 # running on the local machine using the default for the UNIX socket. To connect to a MySQL server
172 # on the local machine via TCP, you must specify the loopback IP address (127.0.0.1) as the host."
173 my $db_port = $params_map->{'db_port'}; # leave as undef if unspecified,
174 # as our tests never used port anyway (must have internally
175 # defaulted to whatever default port is used for MySQL)
176
177
[32529]178 #my $connect_str = "dbi:$db_driver:database=$db_name;host=$db_host";
[32580]179 # But don't provide db now - this allows checking the db exists later when loading the db
180 my $connect_str = "dbi:$db_driver:host=$db_host";
181 $connect_str .= ";port=$db_port" if $db_port;
[32558]182
[32578]183 if($params_map->{'verbosity'}) {
[32560]184 print STDERR "Away to make connection to $db_driver database with:\n";
185 print STDERR " - hostname $db_host; username: $db_user";
[32563]186 print STDERR "; and the provided password" if $db_pwd;
[32560]187 print STDERR "\nAssuming the mysql server has been started with: --character_set_server=utf8mb4\n" if $db_driver eq "mysql";
188 }
[32558]189
[32529]190 my $dbh = DBI->connect("$connect_str", $db_user, $db_pwd,
191 {
192 ShowErrorStatement => 1, # more informative as DBI will append failed SQL stmt to error message
193 PrintError => 1, # on by default, but being explicit
194 RaiseError => 0, # off by default, but being explicit
[32557]195 AutoCommit => 1, # on by default, but being explicit
196 mysql_enable_utf8mb4 => 1 # tells MySQL to use UTF-8 for communication and tells DBD::mysql to decode the data, see https://stackoverflow.com/questions/46727362/perl-mysql-utf8mb4-issue-possible-bug
[32529]197 });
198
199 if(!$dbh) {
[32557]200 # NOTE, despite handle dbh being undefined, error code will be in DBI->err (note caps)
[32529]201 return 0;
202 }
203
204 # set encoding https://metacpan.org/pod/DBD::mysql
205 # https://dev.mysql.com/doc/refman/5.7/en/charset.html
206 # https://dev.mysql.com/doc/refman/5.7/en/charset-conversion.html
[32557]207 # Setting the encoding at db server level: $dbh->do("set NAMES '" . $db_enc . "'");
208 # HOWEVER:
209 # It turned out insufficient setting the encoding to utf8, as that only supports utf8 chars that
210 # need up to 3 bytes. We may need up to 4 bytes per utf8 character, e.g. chars with macron,
211 # and for that, we need the encoding to be set to utf8mb4.
212 # To set up a MySQL db to use utf8mb4 requires configuration on the server side too.
213 # https://stackoverflow.com/questions/10957238/incorrect-string-value-when-trying-to-insert-utf-8-into-mysql-via-jdbc
214 # https://stackoverflow.com/questions/46727362/perl-mysql-utf8mb4-issue-possible-bug
215 # To set up the db for utf8mb4, therefore,
216 # the MySQL server needs to be configured for that char encoding by running the server as:
217 # mysql-5.7.23-linux-glibc2.12-x86_64/bin>./mysqld_safe --datadir=/Scratch/ak19/mysql/data --character_set_server=utf8mb4
218 # AND when connecting to the server, we can can either set mysql_enable_utf8mb4 => 1
219 # as a connection option
220 # OR we need to do both "set NAMES utf8mb4" AND "$dbh->{mysql_enable_utf8mb4} = 1;" after connecting
221 #
222 # Search results for DBI Set Names imply the "SET NAMES '<enc>'" command is mysql specific too,
223 # so setting the mysql specific option during connection above as "mysql_enable_utf8mb4 => 1"
224 # is no more objectionable. It has the advantage of cutting out the 2 extra lines of doing
225 # set NAMES '<enc>' and $dbh->{mysql_enable_utf8mb4} = 1 here.
226 # These lines may be preferred if more db_driver options are to be supported in future:
227 # then a separate method called set_db_encoding($enc) can work out what db_driver we're using
228 # and if mysql and enc=utfy, then it can do the following whereas it will issue other do stmts
229 # for other db_drivers, see https://www.perlmonks.org/?node_id=259456:
[32529]230
[32557]231 #my $stmt = "set NAMES '" . $db_enc . "'";
232 #$dbh->do($stmt) || warn("Unable to set charset encoding at db server level to: " . $db_enc . "\n"); # tells MySQL to use UTF-8 for communication
233 #$dbh->{mysql_enable_utf8mb4} = 1; # tells DBD::mysql to decode the data
234
[32529]235 # if we're here, then connection succeeded, store handle
[32578]236 $_dbh_instance = $dbh;
237 return $_dbh_instance;
238
[32529]239}
240
[32578]241# Will disconnect if this instance of gssql holds the last reference to the db connection
[32579]242sub finished {
[32578]243 my $self= shift (@_);
244
245 $ref_count--;
246 if($ref_count == 0) {
247 $self->force_disconnect_from_db();
248 }
249}
250
251# Call this method on die(), so that you're sure the perl process has disconnected from SQL db
252# Disconnect from db - https://metacpan.org/pod/DBI#disconnect
253# TODO: make sure to have committed or rolled back before disconnect
254# and that you've call finish() on statement handles if any fetch remnants remain
255sub force_disconnect_from_db {
256 my $self= shift (@_);
257
258 if($_dbh_instance) {
259 # make sure any active stmt handles are finished
260 # NO: "When all the data has been fetched from a SELECT statement, the driver will automatically call finish for you. So you should not call it explicitly except when you know that you've not fetched all the data from a statement handle and the handle won't be destroyed soon."
261
262 print STDERR " GSSQL disconnecting from database\n";
263 # Just go through the singleton db handle to disconnect
264 $_dbh_instance->disconnect or warn $_dbh_instance->errstr;
265 $_dbh_instance = undef;
266 }
267 # Number of gssql objects that share a live connection is now 0, as the connection's dead
268 # either because the last gssql object finished() or because connection was killed (force)
269 $ref_count = 0;
270}
271
272
[32563]273# Load the designated database, i.e. 'use <dbname>;'.
274# If the database doesn't yet exist, creates it and loads it.
275# (Don't create the collection's tables yet, though)
276# At the end it will have loaded the requested database (in MySQL: "use <db>;") on success.
277# As usual, returns success or failure value that can be evaluated in a boolean context.
278sub use_db {
[32529]279 my $self= shift (@_);
[32563]280 my ($db_name) = @_;
[32529]281 my $dbh = $self->{'db_handle'};
[32561]282 $db_name = $self->sanitize_name($db_name);
[32529]283
[32560]284 print STDERR "Attempting to use database $db_name\n" if($self->{'verbosity'});
[32558]285
[32529]286 # perl DBI switch database: https://www.perlmonks.org/?node_id=995434
287 # do() returns undef on error.
288 # connection succeeded, try to load our database. If that didn't work, attempt to create db
289 my $success = $dbh->do("use $db_name");
290
291 if(!$success && $dbh->err == 1049) { # "Unknown database" error has code 1049 (mysql only?) meaning db doesn't exist yet
[32558]292
[32561]293 print STDERR "Database $db_name didn't exist, creating it along with the tables for the current collection...\n" if($self->{'verbosity'});
[32558]294
[32529]295 # attempt to create the db and its tables
296 $self->create_db($db_name) || return 0;
297
[32560]298 print STDERR " Created database $db_name\n" if($self->{'verbosity'} > 1);
[32529]299
300 # once more attempt to use db, now that it exists
301 $dbh->do("use $db_name") || return 0;
[32563]302 #$dbh->do("use $db_name") or die "Error (code" . $dbh->err ."): " . $dbh->errstr . "\n";
[32529]303
304 $success = 1;
305 }
306 elsif($success) { # database existed and loaded successfully, but
307 # before proceeding check that the current collection's tables exist
308
[32560]309 print STDERR "@@@ DATABASE $db_name EXISTED\n" if($self->{'verbosity'} > 2);
[32529]310 }
311
312 return $success; # could still return 0, if database failed to load with an error code != 1049
313}
314
[32571]315
[32563]316# We should already have done "use <database>;" if this gets called.
317# Just load this collection's metatable
318sub ensure_meta_table_exists {
319 my $self = shift (@_);
320
321 my $tablename = $self->get_metadata_table_name();
322 if(!$self->table_exists($tablename)) {
323 #print STDERR " Creating metadata table $tablename\n" if($self->{'verbosity'} > 1);
324 $self->create_metadata_table() || return 0;
325 } else {
326 print STDERR "@@@ Meta table exists\n" if($self->{'verbosity'} > 2);
327 }
328 return 1;
329}
[32558]330
[32563]331# We should already have done "use <database>;" if this gets called.
332# Just load this collection's metatable
333sub ensure_fulltxt_table_exists {
334 my $self = shift (@_);
[32561]335
[32563]336 my $tablename = $self->get_fulltext_table_name();
337 if(!$self->table_exists($tablename)) {
338 #print STDERR " Creating fulltxt table $tablename\n" if($self->{'verbosity'} > 1);
339 $self->create_fulltext_table() || return 0;
340 } else {
341 print STDERR "@@@ Fulltxt table exists\n" if($self->{'verbosity'} > 2);
342 }
343 return 1;
[32529]344}
345
346
347sub create_db {
348 my $self= shift (@_);
[32557]349 my ($db_name) = @_;
[32529]350 my $dbh = $self->{'db_handle'};
[32561]351 $db_name = $self->sanitize_name($db_name);
[32529]352
353 # https://stackoverflow.com/questions/5025768/how-can-i-create-a-mysql-database-from-a-perl-script
354 return $dbh->do("create database $db_name"); # do() will return undef on fail, https://metacpan.org/pod/DBI#do
355}
356
357
358sub create_metadata_table {
359 my $self= shift (@_);
360 my $dbh = $self->{'db_handle'};
361
362 my $table_name = $self->get_metadata_table_name();
[32560]363 print STDERR " Creating table $table_name\n" if($self->{'verbosity'} > 1);
[32558]364
[32529]365 # If using an auto incremented primary key:
366 my $stmt = "CREATE TABLE $table_name (id INT NOT NULL AUTO_INCREMENT, did VARCHAR(63) NOT NULL, sid VARCHAR(63) NOT NULL, metaname VARCHAR(127) NOT NULL, metavalue VARCHAR(1023) NOT NULL, PRIMARY KEY(id));";
367 return $dbh->do($stmt);
368}
369
370# TODO: Investigate: https://dev.mysql.com/doc/search/?d=10&p=1&q=FULLTEXT
371# 12.9.1 Natural Language Full-Text Searches
372# to see whether we have to index the 'fulltxt' column of the 'fulltext' tables
373# or let user edit this file, or add it as another option
374sub create_fulltext_table {
375 my $self= shift (@_);
376 my $dbh = $self->{'db_handle'};
377
378 my $table_name = $self->get_fulltext_table_name();
[32560]379 print STDERR " Creating table $table_name\n" if($self->{'verbosity'} > 1);
[32558]380
[32529]381 # If using an auto incremented primary key:
382 my $stmt = "CREATE TABLE $table_name (id INT NOT NULL AUTO_INCREMENT, did VARCHAR(63) NOT NULL, sid VARCHAR(63) NOT NULL, fulltxt LONGTEXT, PRIMARY KEY(id));";
383 return $dbh->do($stmt);
384
385}
386
[32580]387
[32538]388sub delete_collection_tables {
389 my $self= shift (@_);
390 my $dbh = $self->{'db_handle'};
[32580]391
[32538]392 # drop table <tablename>
393 my $table = $self->get_metadata_table_name();
[32557]394 if($self->table_exists($table)) {
[32580]395 $dbh->do("drop table $table");# || warn("@@@ Couldn't delete $table");
[32557]396 }
[32538]397 $table = $self->get_fulltext_table_name();
[32557]398 if($self->table_exists($table)) {
[32580]399 $dbh->do("drop table $table");# || warn("@@@ Couldn't delete $table");
[32557]400 }
[32538]401}
[32529]402
[32538]403# Don't call this: it will delete the meta and full text tables for ALL collections in $db_name (localsite by default)!
[32541]404# This method is just here for debugging (for testing creating a database when there is none)
[32580]405#
406# "IF EXISTS is used to prevent an error from occurring if the database does not exist. ... DROP DATABASE returns the number of tables that were removed. The DROP DATABASE statement removes from the given database directory those files and directories that MySQL itself may create during normal operation.Jun 20, 2012"
407# MySQL 8.0 Reference Manual :: 13.1.22 DROP DATABASE Syntax
408# https://dev.mysql.com/doc/en/drop-database.html
[32538]409sub _delete_database {
410 my $self= shift (@_);
411 my ($db_name) = @_;
412 my $dbh = $self->{'db_handle'};
[32561]413 $db_name = $self->sanitize_name($db_name);
414
[32560]415 print STDERR "!!! Deleting database $db_name\n" if($self->{'verbosity'});
[32538]416
417 # "drop database dbname"
418 $dbh->do("drop database $db_name") || return 0;
419
420 return 1;
421}
422
423
424########################### DB STATEMENTS ###########################
425
[32529]426# USEFUL: https://metacpan.org/pod/DBI
427# "Many methods have an optional \%attr parameter which can be used to pass information to the driver implementing the method. Except where specifically documented, the \%attr parameter can only be used to pass driver specific hints. In general, you can ignore \%attr parameters or pass it as undef."
428
[32574]429# More efficient to use prepare() to prepare an SQL statement once and then execute() it many times
430# (binding different values to placeholders) than running do() which will prepare each time and
431# execute each time. Also, do() is not useful with SQL select statements as it doesn't fetch rows.
432# Can prepare and cache prepared statements or retrieve prepared statements if cached in one step:
433# https://metacpan.org/pod/release/TIMB/DBI-1.634_50/DBI.pm#prepare_cached
[32529]434
435# https://www.guru99.com/insert-into.html
436# and https://dev.mysql.com/doc/refman/8.0/en/example-auto-increment.html
437# for inserting multiple rows at once
438# https://www.perlmonks.org/bare/?node_id=316183
439# https://metacpan.org/pod/DBI#do
440# https://www.quora.com/What-is-the-difference-between-prepare-and-do-statements-in-Perl-while-we-make-a-connection-to-the-database-for-executing-the-query
441# https://docstore.mik.ua/orelly/linux/dbi/ch05_05.htm
442
443# https://metacpan.org/pod/DBI#performance
444# 'The q{...} style quoting used in this example avoids clashing with quotes that may be used in the SQL statement. Use the double-quote like qq{...} operator if you want to interpolate variables into the string. See "Quote and Quote-like Operators" in perlop for more details.'
[32573]445#
446# This method uses lazy loading to prepare the SQL insert stmt once for a table and store it,
447# then execute the (stored) statement each time it's needed for that table.
448sub insert_row_into_metadata_table {
449 my $self = shift (@_);
[32580]450 my ($doc_oid, $section_name, $meta_name, $escaped_meta_value, $debug_only) = @_;
[32573]451
[32529]452 my $dbh = $self->{'db_handle'};
[32574]453
454 my $tablename = $self->get_metadata_table_name();
[32580]455 my $sth = $dbh->prepare_cached(qq{INSERT INTO $tablename (did, sid, metaname, metavalue) VALUES (?, ?, ?, ?)});# || warn("Could not prepare insert statement for metadata table\n");
[32529]456
[32573]457 # Now we're ready to execute the command, unless we're only debugging
[32529]458
[32573]459 if($debug_only) {
460 # just print the statement we were going to execute
[32580]461 print STDERR $sth->{'Statement'} . "($doc_oid, $section_name, $meta_name, $escaped_meta_value)\n";
[32576]462 }
463 else {
464 print STDERR $sth->{'Statement'} . "($doc_oid, $section_name, $meta_name, $escaped_meta_value)\n" if $self->{'verbosity'} > 2;
[32573]465
466 $sth->execute($doc_oid, $section_name, $meta_name, $escaped_meta_value)
467 || warn ("Unable to write metadata row to db:\n\tOID $doc_oid, section $section_name,\n\tmeta name: $meta_name, val: $escaped_meta_value");
468 # Execution failure will print out info anyway: since db connection sets PrintError
469 }
[32529]470}
471
[32573]472# As above. Likewise uses lazy loading to prepare the SQL insert stmt once for a table and store it,
473# then execute the (stored) statement each time it's needed for that table.
474sub insert_row_into_fulltxt_table {
[32529]475 my $self = shift (@_);
476 #my ($did, $sid, $fulltext) = @_;
[32580]477 my ($doc_oid, $section_name, $section_textref, $debug_only) = @_;
[32573]478
[32529]479 my $dbh = $self->{'db_handle'};
480
[32574]481 my $tablename = $self->get_fulltext_table_name();
[32580]482 my $sth = $dbh->prepare_cached(qq{INSERT INTO $tablename (did, sid, fulltxt) VALUES (?, ?, ?)});# || warn("Could not prepare insert statement for fulltxt table\n");
[32574]483
[32573]484 # Now we're ready to execute the command, unless we're only debugging
485
[32580]486 # don't display the fulltxt value as it could be too long
[32576]487 my $txt_repr = $$section_textref ? "<TXT>" : "NULL";
[32580]488 if($debug_only) { # only print statement, don't execute it
489 print STDERR $sth->{'Statement'} . "($doc_oid, $section_name, $txt_repr)\n";
[32576]490 }
491 else {
492 print STDERR $sth->{'Statement'} . "($doc_oid, $section_name, $txt_repr)\n" if $self->{'verbosity'} > 2;
493
[32573]494 $sth->execute($doc_oid, $section_name, $$section_textref)
[32580]495 || warn ("Unable to write fulltxt row to db for row:\n\tOID $doc_oid, section $section_name"); # Execution failure will print out info anyway: since db connection sets PrintError
[32573]496 }
[32529]497}
498
[32538]499
500## The 2 select statements used by GreenstoneSQLPlugin
501
[32575]502# Using fetchall_arrayref on statement handle, to run on prepared and executed stmt
503# https://metacpan.org/pod/release/TIMB/DBI-1.634_50/DBI.pm#fetchall_arrayref
504# instead of selectall_arrayref on database handle which will prepare, execute and fetch
505# https://metacpan.org/pod/release/TIMB/DBI-1.634_50/DBI.pm#selectall_arrayref
506#
[32538]507# Returns the statement handle that prepared and executed
508# a "SELECT * FROM <COLL>_metadata WHERE did = $oid" SQL statement.
509# Caller can call fetchrow_array() on returned statement handle, $sth
510# Have to use prepare() and execute() instead of do() since do() does
511# not allow for fetching result set thereafter:
512# do(): "This method is typically most useful for non-SELECT statements that either cannot be prepared in advance (due to a limitation of the driver) or do not need to be executed repeatedly. It should not be used for SELECT statements because it does not return a statement handle (so you can't fetch any data)." https://metacpan.org/pod/release/TIMB/DBI-1.634_50/DBI.pm#do
513sub select_from_metatable_matching_docid {
[32529]514 my $self= shift (@_);
[32575]515 my ($oid, $outhandle) = @_;
[32538]516
[32529]517 my $dbh = $self->{'db_handle'};
[32575]518 my $tablename = $self->get_metadata_table_name();
[32529]519
[32575]520 my $sth = $dbh->prepare_cached(qq{SELECT * FROM $tablename WHERE did = ?});
[32538]521 $sth->execute( $oid ); # will print msg on fail
[32575]522
523 print $outhandle "### SQL select stmt: ".$sth->{'Statement'}."\n"
524 if ($self->{'verbosity'} > 2);
[32529]525
[32575]526 my $rows_ref = $sth->fetchall_arrayref();
527 # "If an error occurs, fetchall_arrayref returns the data fetched thus far, which may be none.
528 # You should check $sth->err afterwards (or use the RaiseError attribute) to discover if the
529 # data is complete or was truncated due to an error."
530 # https://metacpan.org/pod/release/TIMB/DBI-1.634_50/DBI.pm#fetchall_arrayref
531 # https://www.oreilly.com/library/view/programming-the-perl/1565926994/ch04s05.html
532 warn("Data fetching from $tablename terminated early by error: " . $dbh->err) if $dbh->err;
533 return $rows_ref;
[32529]534}
535
[32574]536
[32575]537# See select_from_metatable_matching_docid() above.
[32538]538# Returns the statement handle that prepared and executed
539# a "SELECT * FROM <COLL>_metadata WHERE did = $oid" SQL statement.
540# Caller can call fetchrow_array() on returned statement handle, $sth
541sub select_from_texttable_matching_docid {
[32529]542 my $self= shift (@_);
[32575]543 my ($oid, $outhandle) = @_;
[32538]544
[32529]545 my $dbh = $self->{'db_handle'};
[32575]546 my $tablename = $self->get_fulltext_table_name();
[32529]547
[32575]548 my $sth = $dbh->prepare_cached(qq{SELECT * FROM $tablename WHERE did = ?});
[32538]549 $sth->execute( $oid ); # will print msg on fail
550
[32575]551 print $outhandle "### SQL select stmt: ".$sth->{'Statement'}."\n"
552 if ($self->{'verbosity'} > 2);
553
554 my $rows_ref = $sth->fetchall_arrayref();
555 # Need explicit warning:
556 warn("Data fetching from $tablename terminated early by error: " . $dbh->err) if $dbh->err;
557 return $rows_ref;
558
[32538]559}
[32529]560
[32544]561# delete all records in metatable with specified docid
562# https://www.tutorialspoint.com/mysql/mysql-delete-query.htm
563# DELETE FROM table_name [WHERE Clause]
564# see example under 'do' at https://metacpan.org/pod/release/TIMB/DBI-1.634_50/DBI.pm
565sub delete_recs_from_metatable_with_docid {
566 my $self= shift (@_);
567 my ($oid) = @_;
568
569 my $dbh = $self->{'db_handle'};
[32571]570
[32574]571 my $tablename = $self->get_metadata_table_name();
572 my $sth = $dbh->prepare_cached(qq{DELETE FROM $tablename WHERE did = ?});
[32571]573 $sth->execute( $oid ) or warn $dbh->errstr; # dbh set to print errors even without doing warn()
[32544]574}
[32538]575
[32544]576# delete all records in metatable with specified docid
577sub delete_recs_from_texttable_with_docid {
578 my $self= shift (@_);
579 my ($oid) = @_;
580
[32571]581 my $dbh = $self->{'db_handle'};
582
[32574]583 my $tablename = $self->get_fulltext_table_name();
584 my $sth = $dbh->prepare_cached(qq{DELETE FROM $tablename WHERE did = ?});
[32571]585 $sth->execute( $oid ) or warn $dbh->errstr; # dbh set to print errors even without doing warn()
[32544]586}
587
[32538]588# Can call this after connection succeeded to get the database handle, dbh,
589# if any specific DB operation (SQL statement, create/delete)
590# needs to be executed that is not already provided as a method of this class.
591sub get_db_handle {
592 my $self= shift (@_);
593 return $self->{'db_handle'};
[32529]594}
595
[32538]596################ HELPER METHODS ##############
597
[32529]598# More basic helper methods
599sub get_metadata_table_name {
600 my $self= shift (@_);
[32531]601 my $table_name = $self->{'tablename_prefix'} . "_metadata";
[32529]602 return $table_name;
603}
604
605# FULLTEXT is a reserved keyword in (My)SQL. https://dev.mysql.com/doc/refman/5.5/en/keywords.html
606# So we can't name a table or any of its columns "fulltext". We use "fulltxt" instead.
607sub get_fulltext_table_name {
608 my $self= shift (@_);
[32531]609 my $table_name = $self->{'tablename_prefix'} . "_fulltxt";
[32529]610 return $table_name;
611}
612
[32561]613# Attempt to make sure the name parameter (for db or table name) is acceptable syntax
614# for the db in question, e.g. for mysql. For example, (My)SQL doesn't like tables or
615# databases with '-' (hyphens) in their names
616sub sanitize_name {
617 my $self= shift (@_);
618 my ($name) = @_;
619 $name =~ s/-/_/g;
620 return $name;
621}
[32531]622
[32561]623
[32529]624# I can get my version of table_exists to work, but it's not so ideal
625# Interesting that MySQL has non-standard command to CREATE TABLE IF NOT EXISTS and DROP TABLE IF EXISTS,
626# see https://www.perlmonks.org/bare/?node=DBI%20Recipes
627# The page further has a table_exists function that could work with proper comparison
[32543]628# TODO Q: Couldn't get the first solution at https://www.perlmonks.org/bare/?node_id=500050 to work though
[32529]629sub table_exists {
630 my $self = shift (@_);
631 my $dbh = $self->{'db_handle'};
632 my ($table_name) = @_;
633
634 my @table_list = $dbh->tables;
635 #my $tables_str = @table_list[0];
636 foreach my $table (@table_list) {
637 return 1 if ($table =~ m/$table_name/);
638 }
639 return 0;
640}
641
6421;
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