source: main/trunk/greenstone2/perllib/gssql.pm@ 32584

Last change on this file since 32584 was 32584, checked in by ak19, 5 years ago

Some more tidying up of the code.

File size: 34.1 KB
RevLine 
[32529]1###########################################################################
2#
[32530]3# gssql.pm -- DBI for SQL related utility functions used by
[32583]4# GreenstoneSQLPlugout and GreenstoneSQLPlugin too.
[32529]5# A component of the Greenstone digital library software
6# from the New Zealand Digital Library Project at the
7# University of Waikato, New Zealand.
8#
9# Copyright (C) 1999 New Zealand Digital Library Project
10#
11# This program is free software; you can redistribute it and/or modify
12# it under the terms of the GNU General Public License as published by
13# the Free Software Foundation; either version 2 of the License, or
14# (at your option) any later version.
15#
16# This program is distributed in the hope that it will be useful,
17# but WITHOUT ANY WARRANTY; without even the implied warranty of
18# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
19# GNU General Public License for more details.
20#
21# You should have received a copy of the GNU General Public License
22# along with this program; if not, write to the Free Software
23# Foundation, Inc., 675 Mass Ave, Cambridge, MA 02139, USA.
24#
25###########################################################################
26
27package gssql;
28
29use strict;
30no strict 'refs';
31no strict 'subs';
32
[32536]33use DBI; # the central package for this module used by GreenstoneSQL Plugout and Plugin
[32529]34
[32581]35
[32580]36##############################
37
38# TODO: add infrastructure for db_port, AutoCommit etc
39# For port, see https://stackoverflow.com/questions/2248665/perl-script-to-connect-to-mysql-server-port-3307
40
41# + TODO: remove unnecessary warn() since PrintError is active
42# https://perldoc.perl.org/perlobj.html#Destructors
43
44# TODO: drop table if exists and create table if exists are available in MySQL. Use those cmds
45# instead of always first checking for existence ourselves?
46##############################
47
[32578]48# singleton connection
49my $_dbh_instance = undef; # calls undef() function. See https://perlmaven.com/undef-and-defined-in-perl
50my $ref_count = 0;
51
[32529]52# Need params_map keys:
53# - collection_name
[32530]54# - db_encoding (db content encoding) - MySQL can set this at server, db, table levels. For MySQL
55# we set the enc during connect at server level. Not sure whether other DB's support it at the
56# same levels.
57
58# For connection to MySQL, need:
[32529]59# - db_driver, db_client_user, db_client_pwd, db_host, (db_port not used at present)
[32530]60# So these will be parameterised, but in a hashmap, for just the connect method.
61
62# Parameterise (one or more methods may use them):
[32583]63# - db_name (which is the GS3 sitename, or "greenstone2" for GS2)
[32530]64
[32582]65
66
67$SIG{INT} = \&finish_signal_handler;
68$SIG{TERM} = \&finish_signal_handler;
69$SIG{KILL} = \&finish_signal_handler;
70
71sub finish_signal_handler {
72 my ($sig) = @_; # one of INT|KILL|TERM
73
74 if ($_dbh_instance) { # database handle (note, using singleton) still active.
75
76 # TODO: If autocommit wasn't set, then this is a cancel operation.
77 # If we've not disconnected from the sql db yet and if we've not committed
78 # transactions yet, then cancel means we do a rollback here
79
80 if($_dbh_instance->{AutoCommit} == 0) {
81 print STDERR " User cancelled: rolling back SQL database transaction.\n";
82 $_dbh_instance->rollback(); # will warn on failure, nothing more we can/want to do,
83 }
84 }
85
86 die "Caught a $sig signal $!"; # die() will always call destructor (sub DESTROY)
87}
88
[32529]89sub new
[32561]90{
[32529]91 my $class = shift(@_);
92
93 my ($params_map) = @_;
94
95 # library_url: to be specified on the cmdline if not using a GS-included web server
96 # the GSDL_LIBRARY_URL env var is useful when running cmdline buildcol.pl in the linux package manager versions of GS3
97
[32531]98 # https://stackoverflow.com/questions/7083453/copying-a-hashref-in-perl
99 # Making a shallow copy works, and can handle unknown params:
100 #my $self = $params_map;
[32529]101
[32531]102 # but being explicit for class params needed for MySQL:
103 my $self = {
104 'collection_name' => $params_map->{'collection_name'},
[32560]105 'verbosity' => $params_map->{'verbosity'} || 1
[32531]106 };
107
[32559]108 # The db_encoding option is presently not passed in to this constructor as parameter.
109 # Placed here to indicate it's sort of optional.
110 # Since docxml are all in utf8, the contents of the GS SQL database should be too,
111 # So making utf8 the hidden default at present.
112 $self->{'db_encoding'} = $params_map->{'db_encoding'} || "utf8";
113
[32561]114 $self = bless($self, $class);
115
116 $self->{'tablename_prefix'} = $self->sanitize_name($params_map->{'collection_name'});
117
118 return $self;
[32529]119}
120
[32581]121# On die(), an object's destructor is called.
122# See https://www.perl.com/article/37/2013/8/18/Catch-and-Handle-Signals-in-Perl/
123# We want to ensure we've closed the db connection in such cases.
124# "It’s common to call die when handling SIGINT and SIGTERM. die is useful because it will ensure that Perl stops correctly: for example Perl will execute a destructor method if present when die is called, but the destructor method will not be called if a SIGINT or SIGTERM is received and no signal handler calls die."
[32582]125#
[32583]126# Useful: https://perldoc.perl.org/perlobj.html#Destructors
[32582]127#
128# https://metacpan.org/pod/release/TIMB/DBI-1.634_50/DBI.pm#disconnect
129# "Disconnects the database from the database handle. disconnect is typically only used before exitin# g the program. The handle is of little use after disconnecting.
130#
131# The transaction behaviour of the disconnect method is, sadly, undefined. Some database systems (such as Oracle and Ingres) will automatically commit any outstanding changes, but others (such as Informix) will rollback any outstanding changes. Applications not using AutoCommit should explicitly call commit or rollback before calling disconnect.
132#
133# The database is automatically disconnected by the DESTROY method if still connected when there are no longer any references to the handle. The DESTROY method for each driver should implicitly call rollback to undo any uncommitted changes. This is vital behaviour to ensure that incomplete transactions don't get committed simply because Perl calls DESTROY on every object before exiting. Also, do not rely on the order of object destruction during "global destruction", as it is undefined.
134#
135# Generally, if you want your changes to be committed or rolled back when you disconnect, then you should explicitly call "commit" or "rollback" before disconnecting.
136#
137# If you disconnect from a database while you still have active statement handles (e.g., SELECT statement handles that may have more data to fetch), you will get a warning. The warning may indicate that a fetch loop terminated early, perhaps due to an uncaught error. To avoid the warning call the finish method on the active handles."
138#
[32581]139sub DESTROY {
140 my $self = shift;
[32529]141
[32581]142 if (${^GLOBAL_PHASE} eq 'DESTRUCT') {
[32582]143
144 if ($_dbh_instance) { # database handle still active. Use singleton handle!
145
[32583]146 # rollback code has moved to finish_signal_handler() where it belongs?
147
148 # NOTE: if RaiseError is set on dbi connection, then on any error, perl process will die()
149 # which will end up calling this DESTROY. If it was a die() that called DESTROY
150 # then need to rollback the db here. However, if it was not a die() but natural termination
151 # of the perl process, destroy() will also get called. In that case we don't want to rollback
152 # but do a commit() to the DB instead.
153 # Perhaps detecting the difference may be accomplished by checking ref_count:
154 # - If ref_count not 0 it may require a rollback?
155 # - If ref_count 0 it may be a natural termination and require a commit? Except that ref_count
156 # is set back to 0 in finished(), which will do the commit when ref_count becomes 0. So shouldn't
157 # (have to) do that here.
158
159 # We're now finally ready to disconnect, as is required for both natural and premature termination
[32581]160 print STDERR "XXXXXXXX Global Destruct: Disconnecting from database\n";
161 $_dbh_instance->disconnect or warn $_dbh_instance->errstr;
162 $_dbh_instance = undef;
163 $ref_count = 0;
164 }
165 return;
166 }
[32583]167
[32581]168}
[32578]169
[32529]170#################################
171
172# Database access related functions
173# http://g2pc1.bu.edu/~qzpeng/manual/MySQL%20Commands.htm
174# https://www.guru99.com/insert-into.html
175
176# TODO Q: What on cancelling a build: delete table? But what if it was a rebuild and the rebuild is cancelled (not the original build)?
177# Do we create a copy of the orig database as backup, then start populating current db, and if cancelled, delete current db and RENAME backup table to current?
178# https://stackoverflow.com/questions/3280006/duplicating-a-mysql-table-indexes-and-data
179# BUT what if the table is HUGE? (Think of a collection with millions of docs.) Huge overhead in copying?
180# The alternative is we just quit on cancel, but then: cancel could leave the table in a partial committed state, with no way of rolling back.
181# Unless they do a full rebuild, which will recreate the table from scratch?
182# SOLUTION-> rollback transaction on error, see https://www.effectiveperlprogramming.com/2010/07/set-custom-dbi-error-handlers/
183# But then should set AutoCommit to off on connection, and remember to commit every time
184
185#################
186# Database functions that use the perl DBI module (with the DBD driver module for mysql)
187#################
188
[32538]189################### BASIC DB OPERATIONS ##################
190
[32529]191# THE NEW DB FUNCTIONS
192# NOTE: FULLTEXT is a reserved keyword in (My)SQL. So we can't name a table or any of its columns "fulltext".
193# https://dev.mysql.com/doc/refman/5.5/en/keywords.html
194
195# TODO: Consider AutoCommit status (and Autocommit off allowing commit or rollback for GS coll build cancel) later
196
[32578]197
198
199# SINGLETON / GET INSTANCE PATTERN
200# https://stackoverflow.com/questions/16655603/perl-objects-class-variable-initialization
201# https://stackoverflow.com/questions/7587157/how-can-i-set-a-static-variable-that-can-be-accessed-by-all-subclasses-of-the-sa
202# Singleton without Moose: https://www.perl.com/article/52/2013/12/11/Implementing-the-singleton-pattern-in-Perl/
203
204sub connect_to_db
205{
[32529]206 my $self= shift (@_);
[32530]207 my ($params_map) = @_;
[32578]208
209 $params_map->{'db_encoding'} = $self->{'db_encoding'};
210 $params_map->{'verbosity'} = $self->{'verbosity'};
211
212 $self->{'db_handle'} = &_get_connection_instance($params_map); # getting singleton (class method)
213 if($self->{'db_handle'}) {
214 $ref_count++; # if successful, keep track of the number of refs to the single db connection
215 return $self->{'db_handle'};
216 }
217 return undef;
218}
219
220# SINGLETON METHOD #
221# TODO: where should the defaults for these params be, here or in GS-SQLPlugin/Plugout?
222sub _get_connection_instance
223{
224 #my $self= shift (@_); # singleton method doesn't use self, but callers don't need to know that
225 my ($params_map) = @_;
[32582]226
227 if($params_map->{'verbosity'}) {
228 if(!defined $params_map->{'autocommit'}) {
229 print STDERR " Autocommit parameter not defined\n";
230 }
231 if($params_map->{'autocommit'}) {
[32583]232 print STDERR " SQL DB CANCEL SUPPORT OFF.\n";
[32582]233 } else {
[32583]234 print STDERR " SQL DB CANCEL SUPPORT ON.\n";
[32582]235 }
236 }
237
[32578]238 return $_dbh_instance if($_dbh_instance);
239
240 # or make the connection
241
[32559]242 # For proper utf8 support in MySQL, encoding should be 'utf8mb4' as 'utf8' is insufficient
[32578]243 my $db_enc = "utf8mb4" if $params_map->{'db_encoding'} eq "utf8";
[32529]244
[32530]245 # these are the params for connecting to MySQL
246 my $db_driver = $params_map->{'db_driver'} || "mysql";
247 my $db_user = $params_map->{'db_client_user'} || "root";
[32580]248 my $db_pwd = $params_map->{'db_client_pwd'}; # even if undef and password was necessary,
249 # we'll see a sensible error message when connect fails
[32530]250 my $db_host = $params_map->{'db_host'} || "127.0.0.1";
[32580]251 # localhost doesn't work for us, but 127.0.0.1 works
252 # https://metacpan.org/pod/DBD::mysql
253 # "The hostname, if not specified or specified as '' or 'localhost', will default to a MySQL server
254 # running on the local machine using the default for the UNIX socket. To connect to a MySQL server
255 # on the local machine via TCP, you must specify the loopback IP address (127.0.0.1) as the host."
256 my $db_port = $params_map->{'db_port'}; # leave as undef if unspecified,
257 # as our tests never used port anyway (must have internally
258 # defaulted to whatever default port is used for MySQL)
259
260
[32529]261 #my $connect_str = "dbi:$db_driver:database=$db_name;host=$db_host";
[32580]262 # But don't provide db now - this allows checking the db exists later when loading the db
263 my $connect_str = "dbi:$db_driver:host=$db_host";
264 $connect_str .= ";port=$db_port" if $db_port;
[32558]265
[32578]266 if($params_map->{'verbosity'}) {
[32560]267 print STDERR "Away to make connection to $db_driver database with:\n";
268 print STDERR " - hostname $db_host; username: $db_user";
[32563]269 print STDERR "; and the provided password" if $db_pwd;
[32560]270 print STDERR "\nAssuming the mysql server has been started with: --character_set_server=utf8mb4\n" if $db_driver eq "mysql";
271 }
[32582]272
273 # DBI AutoCommit connection param is on/1 by default, so if a value for this is not defined
274 # as a method parameter to _get_connection_instance, then fallback to the default of on/1
275 my $autocommit = (defined $params_map->{'autocommit'}) ? $params_map->{'autocommit'} : 1;
[32558]276
[32529]277 my $dbh = DBI->connect("$connect_str", $db_user, $db_pwd,
278 {
279 ShowErrorStatement => 1, # more informative as DBI will append failed SQL stmt to error message
280 PrintError => 1, # on by default, but being explicit
281 RaiseError => 0, # off by default, but being explicit
[32582]282 AutoCommit => $autocommit,
[32557]283 mysql_enable_utf8mb4 => 1 # tells MySQL to use UTF-8 for communication and tells DBD::mysql to decode the data, see https://stackoverflow.com/questions/46727362/perl-mysql-utf8mb4-issue-possible-bug
[32529]284 });
285
286 if(!$dbh) {
[32557]287 # NOTE, despite handle dbh being undefined, error code will be in DBI->err (note caps)
[32529]288 return 0;
289 }
290
291 # set encoding https://metacpan.org/pod/DBD::mysql
292 # https://dev.mysql.com/doc/refman/5.7/en/charset.html
293 # https://dev.mysql.com/doc/refman/5.7/en/charset-conversion.html
[32557]294 # Setting the encoding at db server level: $dbh->do("set NAMES '" . $db_enc . "'");
295 # HOWEVER:
296 # It turned out insufficient setting the encoding to utf8, as that only supports utf8 chars that
297 # need up to 3 bytes. We may need up to 4 bytes per utf8 character, e.g. chars with macron,
298 # and for that, we need the encoding to be set to utf8mb4.
299 # To set up a MySQL db to use utf8mb4 requires configuration on the server side too.
300 # https://stackoverflow.com/questions/10957238/incorrect-string-value-when-trying-to-insert-utf-8-into-mysql-via-jdbc
301 # https://stackoverflow.com/questions/46727362/perl-mysql-utf8mb4-issue-possible-bug
302 # To set up the db for utf8mb4, therefore,
303 # the MySQL server needs to be configured for that char encoding by running the server as:
304 # mysql-5.7.23-linux-glibc2.12-x86_64/bin>./mysqld_safe --datadir=/Scratch/ak19/mysql/data --character_set_server=utf8mb4
305 # AND when connecting to the server, we can can either set mysql_enable_utf8mb4 => 1
306 # as a connection option
307 # OR we need to do both "set NAMES utf8mb4" AND "$dbh->{mysql_enable_utf8mb4} = 1;" after connecting
308 #
309 # Search results for DBI Set Names imply the "SET NAMES '<enc>'" command is mysql specific too,
310 # so setting the mysql specific option during connection above as "mysql_enable_utf8mb4 => 1"
311 # is no more objectionable. It has the advantage of cutting out the 2 extra lines of doing
312 # set NAMES '<enc>' and $dbh->{mysql_enable_utf8mb4} = 1 here.
313 # These lines may be preferred if more db_driver options are to be supported in future:
314 # then a separate method called set_db_encoding($enc) can work out what db_driver we're using
315 # and if mysql and enc=utfy, then it can do the following whereas it will issue other do stmts
316 # for other db_drivers, see https://www.perlmonks.org/?node_id=259456:
[32529]317
[32557]318 #my $stmt = "set NAMES '" . $db_enc . "'";
319 #$dbh->do($stmt) || warn("Unable to set charset encoding at db server level to: " . $db_enc . "\n"); # tells MySQL to use UTF-8 for communication
320 #$dbh->{mysql_enable_utf8mb4} = 1; # tells DBD::mysql to decode the data
321
[32529]322 # if we're here, then connection succeeded, store handle
[32578]323 $_dbh_instance = $dbh;
324 return $_dbh_instance;
325
[32529]326}
327
[32578]328# Will disconnect if this instance of gssql holds the last reference to the db connection
[32583]329# If disconnecting and autocommit is off, then this will commit before disconnecting
[32579]330sub finished {
[32578]331 my $self= shift (@_);
[32583]332 my $dbh = $self->{'db_handle'};
[32582]333
[32583]334 my $rc = 1; # return code: everything went fine, regardless of whether we needed to commit
335 # (AutoCommit on or off)
336
[32578]337 $ref_count--;
[32583]338 if($ref_count == 0) { # Only commit transaction when we're about to actually disconnect, not before
[32582]339
[32583]340 # TODO: If AutoCommit was off, meaning transactions were on/enabled,
341 # then here is where we commit our one long transaction.
342 # https://metacpan.org/pod/release/TIMB/DBI-1.634_50/DBI.pm#commit
343 if($dbh->{AutoCommit} == 0) {
344 print STDERR " Committing transaction to SQL database now.\n" if $self->{'verbosity'};
345 $rc = $dbh->commit() or warn("SQL DB COMMIT FAILED: " . $dbh->errstr); # important problem
346 # worth embellishing error message
347 }
348 # else if autocommit was on, then we'd have committed after every db operation, so nothing to do
349
350 $self->_force_disconnect_from_db();
[32582]351 }
352
353 return $rc;
[32578]354}
355
[32582]356
[32578]357# Call this method on die(), so that you're sure the perl process has disconnected from SQL db
358# Disconnect from db - https://metacpan.org/pod/DBI#disconnect
359# TODO: make sure to have committed or rolled back before disconnect
360# and that you've call finish() on statement handles if any fetch remnants remain
[32583]361sub _force_disconnect_from_db {
[32578]362 my $self= shift (@_);
363
364 if($_dbh_instance) {
365 # make sure any active stmt handles are finished
366 # NO: "When all the data has been fetched from a SELECT statement, the driver will automatically call finish for you. So you should not call it explicitly except when you know that you've not fetched all the data from a statement handle and the handle won't be destroyed soon."
367
[32584]368 print STDERR " GSSQL disconnecting from database\n" if $self->{'verbosity'};
[32578]369 # Just go through the singleton db handle to disconnect
370 $_dbh_instance->disconnect or warn $_dbh_instance->errstr;
371 $_dbh_instance = undef;
372 }
373 # Number of gssql objects that share a live connection is now 0, as the connection's dead
374 # either because the last gssql object finished() or because connection was killed (force)
375 $ref_count = 0;
376}
377
378
[32563]379# Load the designated database, i.e. 'use <dbname>;'.
380# If the database doesn't yet exist, creates it and loads it.
381# (Don't create the collection's tables yet, though)
382# At the end it will have loaded the requested database (in MySQL: "use <db>;") on success.
383# As usual, returns success or failure value that can be evaluated in a boolean context.
384sub use_db {
[32529]385 my $self= shift (@_);
[32563]386 my ($db_name) = @_;
[32529]387 my $dbh = $self->{'db_handle'};
[32561]388 $db_name = $self->sanitize_name($db_name);
[32529]389
[32560]390 print STDERR "Attempting to use database $db_name\n" if($self->{'verbosity'});
[32558]391
[32529]392 # perl DBI switch database: https://www.perlmonks.org/?node_id=995434
393 # do() returns undef on error.
394 # connection succeeded, try to load our database. If that didn't work, attempt to create db
395 my $success = $dbh->do("use $db_name");
396
397 if(!$success && $dbh->err == 1049) { # "Unknown database" error has code 1049 (mysql only?) meaning db doesn't exist yet
[32558]398
[32561]399 print STDERR "Database $db_name didn't exist, creating it along with the tables for the current collection...\n" if($self->{'verbosity'});
[32558]400
[32529]401 # attempt to create the db and its tables
402 $self->create_db($db_name) || return 0;
403
[32560]404 print STDERR " Created database $db_name\n" if($self->{'verbosity'} > 1);
[32529]405
406 # once more attempt to use db, now that it exists
407 $dbh->do("use $db_name") || return 0;
[32563]408 #$dbh->do("use $db_name") or die "Error (code" . $dbh->err ."): " . $dbh->errstr . "\n";
[32529]409
410 $success = 1;
411 }
412 elsif($success) { # database existed and loaded successfully, but
413 # before proceeding check that the current collection's tables exist
414
[32560]415 print STDERR "@@@ DATABASE $db_name EXISTED\n" if($self->{'verbosity'} > 2);
[32529]416 }
417
418 return $success; # could still return 0, if database failed to load with an error code != 1049
419}
420
[32571]421
[32563]422# We should already have done "use <database>;" if this gets called.
423# Just load this collection's metatable
424sub ensure_meta_table_exists {
425 my $self = shift (@_);
426
427 my $tablename = $self->get_metadata_table_name();
428 if(!$self->table_exists($tablename)) {
429 $self->create_metadata_table() || return 0;
430 } else {
431 print STDERR "@@@ Meta table exists\n" if($self->{'verbosity'} > 2);
432 }
433 return 1;
434}
[32558]435
[32563]436# We should already have done "use <database>;" if this gets called.
437# Just load this collection's metatable
438sub ensure_fulltxt_table_exists {
439 my $self = shift (@_);
[32561]440
[32563]441 my $tablename = $self->get_fulltext_table_name();
442 if(!$self->table_exists($tablename)) {
443 $self->create_fulltext_table() || return 0;
444 } else {
445 print STDERR "@@@ Fulltxt table exists\n" if($self->{'verbosity'} > 2);
446 }
447 return 1;
[32529]448}
449
450
451sub create_db {
452 my $self= shift (@_);
[32557]453 my ($db_name) = @_;
[32529]454 my $dbh = $self->{'db_handle'};
[32561]455 $db_name = $self->sanitize_name($db_name);
[32529]456
457 # https://stackoverflow.com/questions/5025768/how-can-i-create-a-mysql-database-from-a-perl-script
458 return $dbh->do("create database $db_name"); # do() will return undef on fail, https://metacpan.org/pod/DBI#do
459}
460
461
462sub create_metadata_table {
463 my $self= shift (@_);
464 my $dbh = $self->{'db_handle'};
465
466 my $table_name = $self->get_metadata_table_name();
[32560]467 print STDERR " Creating table $table_name\n" if($self->{'verbosity'} > 1);
[32558]468
[32529]469 # If using an auto incremented primary key:
470 my $stmt = "CREATE TABLE $table_name (id INT NOT NULL AUTO_INCREMENT, did VARCHAR(63) NOT NULL, sid VARCHAR(63) NOT NULL, metaname VARCHAR(127) NOT NULL, metavalue VARCHAR(1023) NOT NULL, PRIMARY KEY(id));";
471 return $dbh->do($stmt);
472}
473
474# TODO: Investigate: https://dev.mysql.com/doc/search/?d=10&p=1&q=FULLTEXT
475# 12.9.1 Natural Language Full-Text Searches
476# to see whether we have to index the 'fulltxt' column of the 'fulltext' tables
477# or let user edit this file, or add it as another option
478sub create_fulltext_table {
479 my $self= shift (@_);
480 my $dbh = $self->{'db_handle'};
481
482 my $table_name = $self->get_fulltext_table_name();
[32560]483 print STDERR " Creating table $table_name\n" if($self->{'verbosity'} > 1);
[32558]484
[32529]485 # If using an auto incremented primary key:
486 my $stmt = "CREATE TABLE $table_name (id INT NOT NULL AUTO_INCREMENT, did VARCHAR(63) NOT NULL, sid VARCHAR(63) NOT NULL, fulltxt LONGTEXT, PRIMARY KEY(id));";
487 return $dbh->do($stmt);
488
489}
490
[32580]491
[32538]492sub delete_collection_tables {
493 my $self= shift (@_);
494 my $dbh = $self->{'db_handle'};
[32580]495
[32538]496 # drop table <tablename>
497 my $table = $self->get_metadata_table_name();
[32557]498 if($self->table_exists($table)) {
[32580]499 $dbh->do("drop table $table");# || warn("@@@ Couldn't delete $table");
[32557]500 }
[32538]501 $table = $self->get_fulltext_table_name();
[32557]502 if($self->table_exists($table)) {
[32580]503 $dbh->do("drop table $table");# || warn("@@@ Couldn't delete $table");
[32557]504 }
[32582]505
506 # TODO Q: commit here, so that future select statements work?
507 # See https://metacpan.org/pod/release/TIMB/DBI-1.634_50/DBI.pm#Transactions
[32538]508}
[32529]509
[32538]510# Don't call this: it will delete the meta and full text tables for ALL collections in $db_name (localsite by default)!
[32541]511# This method is just here for debugging (for testing creating a database when there is none)
[32580]512#
513# "IF EXISTS is used to prevent an error from occurring if the database does not exist. ... DROP DATABASE returns the number of tables that were removed. The DROP DATABASE statement removes from the given database directory those files and directories that MySQL itself may create during normal operation.Jun 20, 2012"
514# MySQL 8.0 Reference Manual :: 13.1.22 DROP DATABASE Syntax
515# https://dev.mysql.com/doc/en/drop-database.html
[32538]516sub _delete_database {
517 my $self= shift (@_);
518 my ($db_name) = @_;
519 my $dbh = $self->{'db_handle'};
[32561]520 $db_name = $self->sanitize_name($db_name);
521
[32560]522 print STDERR "!!! Deleting database $db_name\n" if($self->{'verbosity'});
[32538]523
524 # "drop database dbname"
525 $dbh->do("drop database $db_name") || return 0;
526
527 return 1;
528}
529
530
531########################### DB STATEMENTS ###########################
532
[32529]533# USEFUL: https://metacpan.org/pod/DBI
534# "Many methods have an optional \%attr parameter which can be used to pass information to the driver implementing the method. Except where specifically documented, the \%attr parameter can only be used to pass driver specific hints. In general, you can ignore \%attr parameters or pass it as undef."
535
[32574]536# More efficient to use prepare() to prepare an SQL statement once and then execute() it many times
537# (binding different values to placeholders) than running do() which will prepare each time and
538# execute each time. Also, do() is not useful with SQL select statements as it doesn't fetch rows.
539# Can prepare and cache prepared statements or retrieve prepared statements if cached in one step:
540# https://metacpan.org/pod/release/TIMB/DBI-1.634_50/DBI.pm#prepare_cached
[32529]541
542# https://www.guru99.com/insert-into.html
543# and https://dev.mysql.com/doc/refman/8.0/en/example-auto-increment.html
544# for inserting multiple rows at once
545# https://www.perlmonks.org/bare/?node_id=316183
546# https://metacpan.org/pod/DBI#do
547# https://www.quora.com/What-is-the-difference-between-prepare-and-do-statements-in-Perl-while-we-make-a-connection-to-the-database-for-executing-the-query
548# https://docstore.mik.ua/orelly/linux/dbi/ch05_05.htm
549
550# https://metacpan.org/pod/DBI#performance
551# 'The q{...} style quoting used in this example avoids clashing with quotes that may be used in the SQL statement. Use the double-quote like qq{...} operator if you want to interpolate variables into the string. See "Quote and Quote-like Operators" in perlop for more details.'
[32573]552#
553# This method uses lazy loading to prepare the SQL insert stmt once for a table and store it,
554# then execute the (stored) statement each time it's needed for that table.
555sub insert_row_into_metadata_table {
556 my $self = shift (@_);
[32580]557 my ($doc_oid, $section_name, $meta_name, $escaped_meta_value, $debug_only) = @_;
[32573]558
[32529]559 my $dbh = $self->{'db_handle'};
[32574]560
561 my $tablename = $self->get_metadata_table_name();
[32580]562 my $sth = $dbh->prepare_cached(qq{INSERT INTO $tablename (did, sid, metaname, metavalue) VALUES (?, ?, ?, ?)});# || warn("Could not prepare insert statement for metadata table\n");
[32529]563
[32573]564 # Now we're ready to execute the command, unless we're only debugging
[32529]565
[32573]566 if($debug_only) {
567 # just print the statement we were going to execute
[32580]568 print STDERR $sth->{'Statement'} . "($doc_oid, $section_name, $meta_name, $escaped_meta_value)\n";
[32576]569 }
570 else {
571 print STDERR $sth->{'Statement'} . "($doc_oid, $section_name, $meta_name, $escaped_meta_value)\n" if $self->{'verbosity'} > 2;
[32573]572
573 $sth->execute($doc_oid, $section_name, $meta_name, $escaped_meta_value)
574 || warn ("Unable to write metadata row to db:\n\tOID $doc_oid, section $section_name,\n\tmeta name: $meta_name, val: $escaped_meta_value");
575 # Execution failure will print out info anyway: since db connection sets PrintError
576 }
[32529]577}
578
[32573]579# As above. Likewise uses lazy loading to prepare the SQL insert stmt once for a table and store it,
580# then execute the (stored) statement each time it's needed for that table.
581sub insert_row_into_fulltxt_table {
[32529]582 my $self = shift (@_);
583 #my ($did, $sid, $fulltext) = @_;
[32580]584 my ($doc_oid, $section_name, $section_textref, $debug_only) = @_;
[32573]585
[32529]586 my $dbh = $self->{'db_handle'};
587
[32574]588 my $tablename = $self->get_fulltext_table_name();
[32580]589 my $sth = $dbh->prepare_cached(qq{INSERT INTO $tablename (did, sid, fulltxt) VALUES (?, ?, ?)});# || warn("Could not prepare insert statement for fulltxt table\n");
[32574]590
[32573]591 # Now we're ready to execute the command, unless we're only debugging
592
[32580]593 # don't display the fulltxt value as it could be too long
[32576]594 my $txt_repr = $$section_textref ? "<TXT>" : "NULL";
[32580]595 if($debug_only) { # only print statement, don't execute it
596 print STDERR $sth->{'Statement'} . "($doc_oid, $section_name, $txt_repr)\n";
[32576]597 }
598 else {
599 print STDERR $sth->{'Statement'} . "($doc_oid, $section_name, $txt_repr)\n" if $self->{'verbosity'} > 2;
600
[32573]601 $sth->execute($doc_oid, $section_name, $$section_textref)
[32580]602 || warn ("Unable to write fulltxt row to db for row:\n\tOID $doc_oid, section $section_name"); # Execution failure will print out info anyway: since db connection sets PrintError
[32573]603 }
[32529]604}
605
[32538]606
607## The 2 select statements used by GreenstoneSQLPlugin
608
[32575]609# Using fetchall_arrayref on statement handle, to run on prepared and executed stmt
610# https://metacpan.org/pod/release/TIMB/DBI-1.634_50/DBI.pm#fetchall_arrayref
611# instead of selectall_arrayref on database handle which will prepare, execute and fetch
612# https://metacpan.org/pod/release/TIMB/DBI-1.634_50/DBI.pm#selectall_arrayref
613#
[32538]614# Returns the statement handle that prepared and executed
615# a "SELECT * FROM <COLL>_metadata WHERE did = $oid" SQL statement.
616# Caller can call fetchrow_array() on returned statement handle, $sth
617# Have to use prepare() and execute() instead of do() since do() does
618# not allow for fetching result set thereafter:
619# do(): "This method is typically most useful for non-SELECT statements that either cannot be prepared in advance (due to a limitation of the driver) or do not need to be executed repeatedly. It should not be used for SELECT statements because it does not return a statement handle (so you can't fetch any data)." https://metacpan.org/pod/release/TIMB/DBI-1.634_50/DBI.pm#do
620sub select_from_metatable_matching_docid {
[32529]621 my $self= shift (@_);
[32575]622 my ($oid, $outhandle) = @_;
[32538]623
[32529]624 my $dbh = $self->{'db_handle'};
[32575]625 my $tablename = $self->get_metadata_table_name();
[32529]626
[32575]627 my $sth = $dbh->prepare_cached(qq{SELECT * FROM $tablename WHERE did = ?});
[32538]628 $sth->execute( $oid ); # will print msg on fail
[32575]629
630 print $outhandle "### SQL select stmt: ".$sth->{'Statement'}."\n"
631 if ($self->{'verbosity'} > 2);
[32529]632
[32575]633 my $rows_ref = $sth->fetchall_arrayref();
634 # "If an error occurs, fetchall_arrayref returns the data fetched thus far, which may be none.
635 # You should check $sth->err afterwards (or use the RaiseError attribute) to discover if the
636 # data is complete or was truncated due to an error."
637 # https://metacpan.org/pod/release/TIMB/DBI-1.634_50/DBI.pm#fetchall_arrayref
638 # https://www.oreilly.com/library/view/programming-the-perl/1565926994/ch04s05.html
639 warn("Data fetching from $tablename terminated early by error: " . $dbh->err) if $dbh->err;
640 return $rows_ref;
[32529]641}
642
[32574]643
[32575]644# See select_from_metatable_matching_docid() above.
[32538]645# Returns the statement handle that prepared and executed
646# a "SELECT * FROM <COLL>_metadata WHERE did = $oid" SQL statement.
647# Caller can call fetchrow_array() on returned statement handle, $sth
648sub select_from_texttable_matching_docid {
[32529]649 my $self= shift (@_);
[32575]650 my ($oid, $outhandle) = @_;
[32538]651
[32529]652 my $dbh = $self->{'db_handle'};
[32575]653 my $tablename = $self->get_fulltext_table_name();
[32529]654
[32575]655 my $sth = $dbh->prepare_cached(qq{SELECT * FROM $tablename WHERE did = ?});
[32538]656 $sth->execute( $oid ); # will print msg on fail
657
[32575]658 print $outhandle "### SQL select stmt: ".$sth->{'Statement'}."\n"
659 if ($self->{'verbosity'} > 2);
660
661 my $rows_ref = $sth->fetchall_arrayref();
662 # Need explicit warning:
663 warn("Data fetching from $tablename terminated early by error: " . $dbh->err) if $dbh->err;
664 return $rows_ref;
665
[32538]666}
[32529]667
[32544]668# delete all records in metatable with specified docid
669# https://www.tutorialspoint.com/mysql/mysql-delete-query.htm
670# DELETE FROM table_name [WHERE Clause]
671# see example under 'do' at https://metacpan.org/pod/release/TIMB/DBI-1.634_50/DBI.pm
672sub delete_recs_from_metatable_with_docid {
673 my $self= shift (@_);
674 my ($oid) = @_;
675
676 my $dbh = $self->{'db_handle'};
[32571]677
[32574]678 my $tablename = $self->get_metadata_table_name();
679 my $sth = $dbh->prepare_cached(qq{DELETE FROM $tablename WHERE did = ?});
[32571]680 $sth->execute( $oid ) or warn $dbh->errstr; # dbh set to print errors even without doing warn()
[32544]681}
[32538]682
[32544]683# delete all records in metatable with specified docid
684sub delete_recs_from_texttable_with_docid {
685 my $self= shift (@_);
686 my ($oid) = @_;
687
[32571]688 my $dbh = $self->{'db_handle'};
689
[32574]690 my $tablename = $self->get_fulltext_table_name();
691 my $sth = $dbh->prepare_cached(qq{DELETE FROM $tablename WHERE did = ?});
[32571]692 $sth->execute( $oid ) or warn $dbh->errstr; # dbh set to print errors even without doing warn()
[32544]693}
694
[32538]695# Can call this after connection succeeded to get the database handle, dbh,
696# if any specific DB operation (SQL statement, create/delete)
697# needs to be executed that is not already provided as a method of this class.
698sub get_db_handle {
699 my $self= shift (@_);
700 return $self->{'db_handle'};
[32529]701}
702
[32538]703################ HELPER METHODS ##############
704
[32529]705# More basic helper methods
706sub get_metadata_table_name {
707 my $self= shift (@_);
[32531]708 my $table_name = $self->{'tablename_prefix'} . "_metadata";
[32529]709 return $table_name;
710}
711
712# FULLTEXT is a reserved keyword in (My)SQL. https://dev.mysql.com/doc/refman/5.5/en/keywords.html
713# So we can't name a table or any of its columns "fulltext". We use "fulltxt" instead.
714sub get_fulltext_table_name {
715 my $self= shift (@_);
[32531]716 my $table_name = $self->{'tablename_prefix'} . "_fulltxt";
[32529]717 return $table_name;
718}
719
[32561]720# Attempt to make sure the name parameter (for db or table name) is acceptable syntax
721# for the db in question, e.g. for mysql. For example, (My)SQL doesn't like tables or
722# databases with '-' (hyphens) in their names
723sub sanitize_name {
724 my $self= shift (@_);
725 my ($name) = @_;
726 $name =~ s/-/_/g;
727 return $name;
728}
[32531]729
[32561]730
[32529]731# I can get my version of table_exists to work, but it's not so ideal
732# Interesting that MySQL has non-standard command to CREATE TABLE IF NOT EXISTS and DROP TABLE IF EXISTS,
733# see https://www.perlmonks.org/bare/?node=DBI%20Recipes
734# The page further has a table_exists function that could work with proper comparison
[32543]735# TODO Q: Couldn't get the first solution at https://www.perlmonks.org/bare/?node_id=500050 to work though
[32529]736sub table_exists {
737 my $self = shift (@_);
738 my $dbh = $self->{'db_handle'};
739 my ($table_name) = @_;
740
741 my @table_list = $dbh->tables;
742 #my $tables_str = @table_list[0];
743 foreach my $table (@table_list) {
744 return 1 if ($table =~ m/$table_name/);
745 }
746 return 0;
747}
748
7491;
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