[32518] | 1 | ###########################################################################
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| 2 | #
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[32527] | 3 | # GreenstoneSQLPlugout.pm -- plugout module for writing all or some the
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| 4 | # Greenstone document format (metadata and/or fulltext) into a (My)SQL db.
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[32526] | 5 | # The rest is then still written out by GreenstoneXMLPlugout as usual.
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[32518] | 6 | # A component of the Greenstone digital library software
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| 7 | # from the New Zealand Digital Library Project at the
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| 8 | # University of Waikato, New Zealand.
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| 9 | #
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| 10 | # Copyright (C) 2006 New Zealand Digital Library Project
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| 11 | #
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| 12 | # This program is free software; you can redistribute it and/or modify
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| 13 | # it under the terms of the GNU General Public License as published by
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| 14 | # the Free Software Foundation; either version 2 of the License, or
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| 15 | # (at your option) any later version.
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| 16 | #
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| 17 | # This program is distributed in the hope that it will be useful,
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| 18 | # but WITHOUT ANY WARRANTY; without even the implied warranty of
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| 19 | # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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| 20 | # GNU General Public License for more details.
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| 21 | #
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| 22 | # You should have received a copy of the GNU General Public License
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| 23 | # along with this program; if not, write to the Free Software
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| 24 | # Foundation, Inc., 675 Mass Ave, Cambridge, MA 02139, USA.
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| 25 | #
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| 26 | ###########################################################################
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| 27 |
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[32527] | 28 | package GreenstoneSQLPlugout;
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[32518] | 29 |
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| 30 | use strict;
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| 31 | no strict 'refs';
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| 32 | no strict 'subs';
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| 33 |
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[32520] | 34 | use GreenstoneXMLPlugout;
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[32518] | 35 | use docprint;
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[32592] | 36 | use gsmysql;
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[32518] | 37 |
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[32524] | 38 | use DBI; # the central package for this plugout
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| 39 |
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[32518] | 40 |
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[32583] | 41 | # + TODO: SIGTERM rollback and disconnect?
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| 42 | # + TODO Q: what about verbosity for debugging, instead of current situation of printing out upon debug set at the expense of writing to db
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[32591] | 43 | #+ TODO Q: introduced site param to plugins and plugouts. Did I do it right? And should they have hiddengli = "yes". No longer a param
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| 44 | # !!!! Did I do the pass by ref in docprint's escape and unescape textref functions correctly, and how they're called here?
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[32580] | 45 | # Any more optimisation I can do around this?
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[32521] | 46 |
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[32543] | 47 | # this plugout does not output the metadata and/or fulltxt xml to a file,
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| 48 | # but outputs rows into a mysql table for metadata and/or a table for fulltxt
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[32518] | 49 | sub BEGIN {
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[32527] | 50 | @GreenstoneSQLPlugout::ISA = ('GreenstoneXMLPlugout');
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[32518] | 51 | }
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| 52 |
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[32580] | 53 | # + NOTTODO: die() statements need to be replaced with premature_termination
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[32529] | 54 | # which should ensure the GreenstoneXMLPlugin (group)'s stuff is closed and cleaned up SOMEHOW
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| 55 | # It's fine: the die() stmts all take place before setting up the super class' begin
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[32520] | 56 |
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[32580] | 57 | # + TODO Q: about build_mode: how to detect removeold. Now handled by
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[32563] | 58 | # GreenstoneSQLPlugout::remove_all(), which is inherited from a base plugin.
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[32580] | 59 | # + TODO: deal with -removeold and everything? Or type out instructions for user
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[32520] | 60 |
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[32580] | 61 | # + TODO Q: what is "group" in GreenstoneXMLPlugout?
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[32518] | 62 |
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| 63 | my $process_mode_list =
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| 64 | [ { 'name' => "meta_only",
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[32537] | 65 | 'desc' => "{GreenstoneSQLPlug.process_mode.meta_only}" },
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[32518] | 66 | { 'name' => "text_only",
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[32537] | 67 | 'desc' => "{GreenstoneSQLPlug.process_mode.text_only}" },
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[32518] | 68 | { 'name' => "all",
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[32537] | 69 | 'desc' => "{GreenstoneSQLPlug.process_mode.all}" } ];
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[32518] | 70 |
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[32582] | 71 | my $rollback_on_cancel_list =
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| 72 | [ { 'name' => "true",
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| 73 | 'desc' => "{GreenstoneSQLPlug.rollback_on_cancel}" },
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| 74 | { 'name' => "false",
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| 75 | 'desc' => "{GreenstoneSQLPlug.rollbacl_on_cancel}" } ];
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| 76 |
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[32541] | 77 | # The following are the saveas.options:
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[32518] | 78 | my $arguments = [
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[32541] | 79 | { 'name' => "process_mode",
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| 80 | 'desc' => "{GreenstoneSQLPlug.process_mode}",
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| 81 | 'type' => "enum",
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| 82 | 'list' => $process_mode_list,
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| 83 | 'deft' => "all",
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| 84 | 'reqd' => "no",
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| 85 | 'hiddengli' => "no"},
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[32582] | 86 | { 'name' => "rollback_on_cancel",
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| 87 | 'desc' => "{GreenstoneSQLPlug.rollback_on_cancel}",
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| 88 | 'type' => "enum",
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| 89 | 'list' => $rollback_on_cancel_list,
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[32591] | 90 | 'deft' => "false", # better default than true
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[32582] | 91 | 'reqd' => "no",
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| 92 | 'hiddengli' => "no"},
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[32541] | 93 | { 'name' => "db_driver",
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| 94 | 'desc' => "{GreenstoneSQLPlug.db_driver}",
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| 95 | 'type' => "string",
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| 96 | 'deft' => "mysql",
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| 97 | 'reqd' => "yes"},
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| 98 | { 'name' => "db_client_user",
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| 99 | 'desc' => "{GreenstoneSQLPlug.db_client_user}",
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| 100 | 'type' => "string",
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| 101 | 'deft' => "root",
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| 102 | 'reqd' => "yes"},
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| 103 | { 'name' => "db_client_pwd",
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| 104 | 'desc' => "{GreenstoneSQLPlug.db_client_pwd}",
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| 105 | 'type' => "string",
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| 106 | 'deft' => "",
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[32591] | 107 | 'reqd' => "no"}, # pwd not required: can create mysql accounts without pwd
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[32541] | 108 | { 'name' => "db_host",
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| 109 | 'desc' => "{GreenstoneSQLPlug.db_host}",
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| 110 | 'type' => "string",
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[32591] | 111 | 'deft' => "127.0.0.1", # localhost doesn't work for us, but 127.0.0.1 works. See gsmysql.pm
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[32589] | 112 | 'reqd' => "yes"},
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| 113 | { 'name' => "db_port",
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| 114 | 'desc' => "{GreenstoneSQLPlug.db_port}",
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| 115 | 'type' => "string", # NOTE: make this int? No default for port, since it's not a required connection param
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| 116 | 'reqd' => "no"}
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[32541] | 117 | ];
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[32518] | 118 |
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[32527] | 119 | my $options = { 'name' => "GreenstoneSQLPlugout",
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| 120 | 'desc' => "{GreenstoneSQLPlugout.desc}",
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[32518] | 121 | 'abstract' => "no",
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| 122 | 'inherits' => "yes",
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| 123 | 'args' => $arguments };
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| 124 |
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[32583] | 125 | ##### This entire class is called only during import.pl #####
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| 126 |
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| 127 | ##### Overridden methods #####
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| 128 |
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[32518] | 129 | sub new {
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| 130 | my ($class) = shift (@_);
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| 131 | my ($plugoutlist, $inputargs,$hashArgOptLists) = @_;
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| 132 | push(@$plugoutlist, $class);
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| 133 |
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| 134 | push(@{$hashArgOptLists->{"ArgList"}},@{$arguments});
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| 135 | push(@{$hashArgOptLists->{"OptList"}},$options);
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| 136 |
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| 137 | my $self = new GreenstoneXMLPlugout($plugoutlist,$inputargs,$hashArgOptLists);
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| 138 |
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| 139 | if ($self->{'info_only'}) {
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| 140 | # don't worry about any options etc
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| 141 | return bless $self, $class;
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| 142 | }
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[32563] | 143 | #print STDERR "***** GreenstoneSQLPlugout process mode = \"", $self->{'process_mode'}, "\"\n";
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[32518] | 144 |
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| 145 | return bless $self, $class;
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| 146 | }
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| 147 |
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[32520] | 148 | # connect here and ensure all tables and databases exist
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| 149 | sub begin {
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| 150 |
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| 151 | my $self= shift (@_);
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[32580] | 152 |
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[32541] | 153 | # The saveas.options
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| 154 | #print STDERR "@@@@ PLUGOUT db_pwd: " . $self->{'db_client_pwd'} . "\n";
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| 155 | #print STDERR "@@@@ user: " . $self->{'db_client_user'} . "\n";
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| 156 | #print STDERR "@@@@ db_host: " . $self->{'db_host'} . "\n";
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| 157 | #print STDERR "@@@@ db_driver: " . $self->{'db_driver'} . "\n";
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| 158 | #print STDERR "@@@@ proc_mode: " . $self->{'process_mode'} . "\n";
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| 159 |
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[32520] | 160 | ############ LOAD NECESSARY OPTIONS ###########
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[32586] | 161 | #print "@@@ plugout SITE NAME: ". $self->{'site'} . "\n" if defined $self->{'site'};
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[32541] | 162 | #print STDERR "########## COLLECTION: ". $ENV{'GSDLCOLLECTION'}."\n";
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| 163 |
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[32527] | 164 | print STDERR "***** GreenstoneSQLPlugout process mode = \"", $self->{'process_mode'}, "\"\n";
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[32529] | 165 |
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| 166 | my $db_params = {
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[32560] | 167 | 'collection_name' => $ENV{'GSDLCOLLECTION'},
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[32580] | 168 | 'verbosity' => $self->{'verbosity'} || 0
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[32582] | 169 |
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[32529] | 170 | };
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| 171 |
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[32592] | 172 | my $gs_sql = new gsmysql($db_params);
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[32582] | 173 |
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| 174 | # if autocommit is set, there's no rollback support
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| 175 | my $autocommit = ($self->{'rollback_on_cancel'} eq "false") ? 1 : 0;
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[32520] | 176 |
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[32578] | 177 | # try connecting to the mysql db, die if that fails
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| 178 | # So don't bother preparing GreenstoneXMLPlugout by calling superclass' begin() yet
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[32530] | 179 | if(!$gs_sql->connect_to_db({
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| 180 | 'db_driver' => $self->{'db_driver'},
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| 181 | 'db_client_user' => $self->{'db_client_user'},
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| 182 | 'db_client_pwd' => $self->{'db_client_pwd'},
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[32582] | 183 | 'db_host' => $self->{'db_host'},
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[32589] | 184 | 'db_port' => $self->{'db_port'}, # undef by default, can leave as is
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[32582] | 185 | 'autocommit' => $autocommit
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[32530] | 186 | })
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| 187 | )
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| 188 | {
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[32520] | 189 | # This is fatal for the plugout, let's terminate here
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| 190 | # PrintError would already have displayed the warning message on connection fail
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| 191 | die("Could not connect to db. Can't proceed.\n");
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| 192 | }
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[32582] | 193 |
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[32592] | 194 | #die("@@@@ TEST. Connected successfully. Testing gsmysql::destructor.\n"); # WORKS
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[32524] | 195 |
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[32586] | 196 | my $db_name = $self->{'site'} || "greenstone2"; # one database per GS3 site, for GS2 the db is called greenstone2
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[32563] | 197 | my $proc_mode = $self->{'process_mode'};
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[32555] | 198 |
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[32563] | 199 |
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| 200 | my $success = $gs_sql->use_db($db_name);
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| 201 |
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| 202 | if($success && $proc_mode ne "text_only") {
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| 203 | ##print STDERR "@@@@ Ensuring meta table exists\n";
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| 204 | $success = $gs_sql->ensure_meta_table_exists();
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| 205 | }
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| 206 | if($success && $proc_mode ne "meta_only") {
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| 207 | ##print STDERR "@@@@ Ensuring fulltxt table exists\n";
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| 208 | $success = $gs_sql->ensure_fulltxt_table_exists();
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| 209 | }
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[32573] | 210 |
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[32563] | 211 | if(!$success) {
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[32536] | 212 | # This is fatal for the plugout, let's terminate here after disconnecting again
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| 213 | # PrintError would already have displayed the warning message on load fail
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[32592] | 214 | # And on die() perl will call gsmysql destroy which will ensure a disconnect() from db
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[32583] | 215 | #$gs_sql->force_disconnect_from_db(); # disconnect_from_db() will issue a warning on error
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[32536] | 216 | die("Could not use db $db_name and/or prepare its tables. Can't proceed.\n");
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[32520] | 217 | }
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| 218 |
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[32529] | 219 | # store the DBI wrapper instance
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| 220 | $self->{'gs_sql'} = $gs_sql;
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| 221 |
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[32524] | 222 |
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[32521] | 223 | # if setting up to work with sql db failed, we'd have terminated and wouldn't come up to here:
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| 224 | # won't bother preparing GreenstoneXMLPlugout by calling superclass' begin()
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| 225 | # finally, can call begin on super - important as doc.xml is opened as a group etc
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[32523] | 226 |
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[32526] | 227 | $self->SUPER::begin(@_);
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[32520] | 228 | }
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| 229 |
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| 230 | # disconnect from database here, see inexport.pm
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| 231 | sub end
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| 232 | {
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| 233 | my $self = shift(@_);
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| 234 |
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[32521] | 235 | # do the superclass stuff first, as any sql db failures should not prevent superclass cleanup
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[32526] | 236 | $self->SUPER::end(@_);
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[32583] | 237 |
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| 238 | # Important to call finished():
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[32592] | 239 | # it will disconnect from db if this is the last gsmysql instance,
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[32583] | 240 | # and it will commit to db before disconnecting if rollbback_on_cancel turned on
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| 241 | $self->{'gs_sql'}->finished();
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[32578] | 242 | delete $self->{'gs_sql'}; # key gs_sql no longer exists, not just the value being undef
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[32520] | 243 | }
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[32533] | 244 |
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[32542] | 245 | # Produce files called docsql.xml instead of doc.xml
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[32536] | 246 | sub get_doc_xml_filename {
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[32533] | 247 | my $self = shift (@_);
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[32536] | 248 | my ($doc_obj) = @_;
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| 249 |
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[32542] | 250 | return "docsql.xml";
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[32533] | 251 | }
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[32542] | 252 |
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| 253 | # overriding to store doc OID as attribute of top level element: <Archive docoid="oid">
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| 254 | sub output_xml_header {
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| 255 | my $self = shift (@_);
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| 256 | my ($outhandle, $doc_oid) = @_;
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| 257 |
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| 258 | print $outhandle '<?xml version="1.0" encoding="utf-8" standalone="no"?>' . "\n";
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| 259 | print $outhandle "<!DOCTYPE Archive SYSTEM \"http://greenstone.org/dtd/Archive/1.0/Archive.dtd\">\n";
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| 260 | print $outhandle "<Archive docoid=\"$doc_oid\">\n";
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| 261 | }
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| 262 |
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[32580] | 263 | # + X TODO: check arc-inf.db for whether each entry is to be deleted/indexed/reindexed/been indexed?
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[32543] | 264 | # That's only for indexing, not for this step which only generates the content in archives dir
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[32518] | 265 | sub saveas {
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| 266 | my $self = shift (@_);
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| 267 | my ($doc_obj, $doc_dir) = @_;
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| 268 |
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[32522] | 269 | my $proc_mode = $self->{'process_mode'};
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| 270 |
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[32521] | 271 | # 1. pre save out and saving debug handle
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| 272 |
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[32523] | 273 | # must call superclass (pre/post) saveas methods, as they handle assoc_files too
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[32526] | 274 | my ($docxml_outhandler, $output_file) = $self->SUPER::pre_saveas(@_);
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[32523] | 275 |
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| 276 | $self->{'debug_outhandle'} = $docxml_outhandler if ($self->{'debug'}); # STDOUT if debug
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| 277 |
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| 278 | # TODO: also set debugging in begin()? Then stmts creating db and tables also sent to debug out and not executed
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[32543] | 279 |
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[32520] | 280 |
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[32543] | 281 | # 2. overriding saving behaviour to do what the superclass does (writing out doc.xml files,
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| 282 | # under new name of docsql.xml, with breadcrumbs pointing to sql db) PLUS saving to sql db
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[32518] | 283 |
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[32543] | 284 | # NOTE: if proc_mode == all, then "breadcrumbs" (statements pointing viewer to the sql db
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| 285 | # for contents) go into both meta and txt elements of doc.xml (docsql.xml specifically):
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[32522] | 286 |
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[32543] | 287 | # write the INVERSE into doc.xml as to what is written to the SQL db
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[32523] | 288 | my $docxml_output_options = { 'output' => docprint::OUTPUT_NONE };
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| 289 | if($proc_mode eq "meta_only" ) { # since only meta to go into MySQL db, text will go into docxml
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| 290 | $docxml_output_options->{'output'} = docprint::OUTPUT_TEXT_ONLY;
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| 291 | } elsif($proc_mode eq "text_only" ) { # since only full text to go into MySQL db, meta will go into docxml
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| 292 | $docxml_output_options->{'output'} = docprint::OUTPUT_META_ONLY;
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[32518] | 293 | }
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[32521] | 294 |
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[32523] | 295 | # now we've prepared to write out whatever is meant to go into docxml
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| 296 | # and can do actual the steps superclass GreenstoneXMLPlugout carries out to write out docxml
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[32543] | 297 | # So: write out the doc xml file, "docsql.xml", for the current document
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[32523] | 298 | my $section_text = &docprint::get_section_xml($doc_obj, $docxml_output_options);
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| 299 | print $docxml_outhandler $section_text;
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| 300 |
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| 301 |
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[32518] | 302 | # We also write out whatever needs to go into the MySQL database
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| 303 | $self->write_meta_and_text($doc_obj);
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| 304 |
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[32520] | 305 |
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[32583] | 306 | # 3. post save out
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[32526] | 307 | $self->SUPER::post_saveas($doc_obj, $doc_dir, $docxml_outhandler, $output_file);
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[32521] | 308 |
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[32523] | 309 |
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[32521] | 310 | # database connection is closed in end() method
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| 311 | # so we don't open and close over and over for each doc during a single build
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[32518] | 312 | }
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| 313 |
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[32583] | 314 | ##### New methods, not inherited #####
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[32518] | 315 |
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[32520] | 316 | # write meta and/or text PER DOC out to DB
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[32518] | 317 | sub write_meta_and_text {
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| 318 | my $self = shift (@_);
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| 319 | my ($doc_obj) = @_;
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[32531] | 320 | my $doc_oid = $doc_obj->get_OID(); # this method processes a single doc at a time, so it uses the same OID throughout
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[32518] | 321 | my $root_section = $doc_obj->get_top_section();
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| 322 |
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[32573] | 323 | $self->recursive_write_meta_and_text($doc_obj, $doc_oid, $root_section);
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[32521] | 324 | }
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[32518] | 325 |
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| 326 | # Perl: Reading or Writing to Another Program
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| 327 | # https://nnc3.com/mags/Perl3/cookbook/ch16_05.htm
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| 328 | sub recursive_write_meta_and_text {
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[32520] | 329 | my $self = shift (@_);
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[32573] | 330 | my ($doc_obj, $doc_oid, $section) = @_;
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[32520] | 331 |
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| 332 | # If section=ROOT, write "root" as section name into table
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| 333 | # doc->get_top_section() is the name of the doc root section, which is ""
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| 334 | my $section_name = ($section eq "") ? "root" : $section;
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[32518] | 335 |
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| 336 | my $section_ptr = $doc_obj->_lookup_section ($section);
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| 337 | return "" unless defined $section_ptr;
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| 338 |
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[32520] | 339 | my $debug_out = $self->{'debug_outhandle'};
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[32573] | 340 |
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| 341 | my $gs_sql = $self->{'gs_sql'};
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| 342 | my $proc_mode = $self->{'process_mode'};
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| 343 | if($proc_mode eq "all" || $proc_mode eq "meta_only" ) {
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[32520] | 344 |
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| 345 | foreach my $data (@{$section_ptr->{'metadata'}}) {
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| 346 | my $meta_name = $data->[0];
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[32536] | 347 | # TODO: does it need to be stored escaped, as it requires unescaping when read back in
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| 348 | # from db (unlike for reading back in from doc.xml)
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[32591] | 349 |
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| 350 | # Treat db like a text file instead of an html/xml file: don't need to escape text
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| 351 | # going into it
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| 352 | #my $escaped_meta_value = &docprint::escape_text($data->[1]);
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| 353 | my $meta_value = $data->[1];
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[32580] | 354 |
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[32520] | 355 | # Write out the current section's meta to collection db's METADATA table
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| 356 |
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[32573] | 357 | # For each set of values to write to meta table, this next method call will
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| 358 | # efficiently execute an insert SQL statement (using a prepared insert statement),
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| 359 | # filling in the values
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| 360 | # OR if debugging, then it will print the SQL insert statement but not execute it
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[32580] | 361 |
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[32591] | 362 | $gs_sql->insert_row_into_metadata_table($doc_oid, $section_name, $meta_name, $meta_value, $self->{'debug'});
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[32580] | 363 | }
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[32518] | 364 | }
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[32520] | 365 |
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[32573] | 366 |
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| 367 | if($proc_mode eq "all" || $proc_mode eq "text_only" ) {
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[32591] | 368 |
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| 369 | # See above, no need to html-escape for db
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| 370 | my $section_text = $section_ptr->{'text'}; #&docprint::escape_textref(\$section_ptr->{'text'});
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[32573] | 371 |
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| 372 | # fulltxt column can be SQL NULL. undef value gets written out as NULL:
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| 373 | # https://stackoverflow.com/questions/12708633/which-one-represents-null-undef-or-empty-string
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| 374 | # The following will do the SQL insertion
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| 375 | # or if debug, the following will print the SQL insert stmt without executing it
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[32591] | 376 | $gs_sql->insert_row_into_fulltxt_table($doc_oid, $section_name, \$section_text, $self->{'debug'});
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[32573] | 377 |
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[32518] | 378 | }
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| 379 |
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| 380 | # output all subsections: RECURSIVE CALL
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| 381 | foreach my $subsection (@{$section_ptr->{'subsection_order'}}) {
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[32573] | 382 | $self->recursive_write_meta_and_text($doc_obj, $doc_oid, "$section.$subsection");
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[32518] | 383 | }
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| 384 | }
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| 385 |
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| 386 |
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| 387 | 1;
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