| 1 | #!/usr/bin/perl
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| 2 |
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| 3 | use strict;
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| 4 | use warnings;
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| 5 |
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| 6 | # Requires setup.bash to have been sourced
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| 7 | BEGIN
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| 8 | {
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| 9 | die "GSDLHOME not set\n" unless defined $ENV{'GSDLHOME'};
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| 10 | die "GSDLOS not set\n" unless defined $ENV{'GSDLOS'};
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| 11 | # Ensure Greenstone Perl locations are in INC
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| 12 | unshift (@INC, $ENV{'GSDLHOME'} . '/perllib');
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| 13 | unshift (@INC, $ENV{'GSDLHOME'} . '/perllib/cpan');
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| 14 | # we'll need the perl version number
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| 15 | my ($version_number) = `perl-version.pl`;
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| 16 | if (defined $ENV{'GSDLEXTS'})
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| 17 | {
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| 18 | my @extensions = split(/:/,$ENV{'GSDLEXTS'});
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| 19 | foreach my $e (@extensions)
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| 20 | {
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| 21 | my $ext_prefix = $ENV{'GSDLHOME'} . '/ext/' . $e;
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| 22 | unshift (@INC, $ext_prefix . '/perllib');
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| 23 | unshift (@INC, $ext_prefix . '/perllib/cpan');
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| 24 | unshift (@INC, $ext_prefix . '/' . $ENV{'GSDLOS'} . '/lib/perl/' . $version_number);
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| 25 | }
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| 26 | }
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| 27 | }
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| 28 |
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| 29 | use Devel::Peek;
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| 30 | use Sort::Key::Natural qw(natsort);
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| 31 | use Time::Local;
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| 32 |
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| 33 | print "\n===== GS Hadoop Report =====\n";
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| 34 | print "Generate a report (CSV) from the output of a parallel processing Green-\n";
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| 35 | print "stone import, suitable for feeding into the Gantt chart generator.\n";
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| 36 | print "============================\n\n";
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| 37 |
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| 38 | # Configuration
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| 39 | if (!defined $ARGV[0] || !-d $ARGV[0])
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| 40 | {
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| 41 | die("usage: hadoop_report.pl <path to results>\n");
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| 42 | }
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| 43 | my $results_path = $ARGV[0];
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| 44 |
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| 45 | # Read in hadoop.log and parse top level record
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| 46 | print ' * Reading and parsing "hadoop.log"... ';
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| 47 | my $job_record = {'host'=>'', 'job'=>'', 'start'=>0, 'end'=>0, 'cpu_time'=>0};
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| 48 | my $hadoop_log_path = $results_path . '/hadoop.log';
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| 49 | if (open(HLIN, '<:utf8', $hadoop_log_path))
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| 50 | {
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| 51 | while (my $line = <HLIN>)
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| 52 | {
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| 53 | if ($line =~ /host:(.+)/)
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| 54 | {
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| 55 | $job_record->{'host'} = $1;
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| 56 | }
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| 57 | elsif ($line =~ /Running job: job_(\d+_\d+)/)
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| 58 | {
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| 59 | $job_record->{'job'} = $1;
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| 60 | }
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| 61 | elsif ($line =~ /CPU time spent \(ms\)=(\d+)/)
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| 62 | {
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| 63 | $job_record->{'cpu_time'} = $1;
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| 64 | }
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| 65 | elsif ($job_record->{'start'} == 0 && $line =~ /(\d\d)\/(\d\d)\/(\d\d) (\d\d):(\d\d):(\d\d)/)
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| 66 | {
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| 67 | $job_record->{'start'} = timelocal($6, $5, $4, $3, ($2 - 1), $1);
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| 68 | }
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| 69 | elsif ($line =~ /(\d\d)\/(\d\d)\/(\d\d) (\d\d):(\d\d):(\d\d)/)
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| 70 | {
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| 71 | my $end = timelocal($6, $5, $4, $3, ($2 - 1), $1);
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| 72 | if ($end > $job_record->{'end'})
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| 73 | {
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| 74 | $job_record->{'end'} = $end;
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| 75 | }
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| 76 | }
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| 77 | }
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| 78 | close(HLIN);
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| 79 | if ($job_record->{'start'} == 0 || $job_record->{'end'} == 0)
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| 80 | {
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| 81 | die('Error! Failed to parse timing information from log: ' . $hadoop_log_path);
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| 82 | }
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| 83 | }
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| 84 | else
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| 85 | {
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| 86 | die('Error! Failed to open file for reading: ' . $hadoop_log_path);
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| 87 | }
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| 88 | print "Done!\n";
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| 89 |
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| 90 | # Read in data_locality.csv (will be matched to task logs)
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| 91 | my $data_was_local = {};
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| 92 | my $data_locality_csv_path = $results_path . '/data_locality.csv';
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| 93 | if (-f $data_locality_csv_path)
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| 94 | {
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| 95 | print ' * Reading and parsing "data_locality.csv"... ';
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| 96 | if (open(DLIN, '<:utf8', $data_locality_csv_path))
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| 97 | {
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| 98 | while (my $line = <DLIN>)
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| 99 | {
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| 100 | if ($line =~ /(\d+),\d,(\d)/)
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| 101 | {
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| 102 | $data_was_local->{$1} = $2;
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| 103 | }
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| 104 | }
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| 105 | close(DLIN);
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| 106 | }
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| 107 | else
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| 108 | {
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| 109 | die('Error! Failed to open file for reading: ' . $data_locality_csv_path);
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| 110 | }
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| 111 | print "Done!\n";
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| 112 | }
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| 113 | else
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| 114 | {
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| 115 | print " * Data locality not available or not applicable\n";
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| 116 | }
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| 117 |
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| 118 | # Read in all task logs and parse task records
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| 119 | my $task_records;
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| 120 | print " * Locating task logs...\n";
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| 121 | if (opendir(DH, $results_path))
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| 122 | {
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| 123 | my @files = readdir(DH);
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| 124 | foreach my $file (sort @files)
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| 125 | {
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| 126 | if ($file =~ /import-hadoop-(\d+_\d+)_m_(\d+)_\d+\.log/)
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| 127 | {
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| 128 | my $job_no = $1;
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| 129 | my $task_no = $2;
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| 130 | my $is_data_local = 0;
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| 131 | if (defined ($data_was_local->{$task_no}))
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| 132 | {
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| 133 | $is_data_local = $data_was_local->{$task_no};
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| 134 | }
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| 135 | my $task_record = {'host'=>'', 'cpu'=>0, 'job' => $job_no, 'task' => $task_no, 'start'=>0, 'end'=>0, 'cpu_time'=>0, 'data_locality'=>$is_data_local, 'file'=>'', 'percom'=>'NA'};
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| 136 | print ' - Reading and parsing "' . $file . '"... ';
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| 137 | my $task_log_path = $results_path . '/' . $file;
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| 138 | my $io_time = 0;
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| 139 | if (open(TIN, '<:utf8', $task_log_path))
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| 140 | {
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| 141 | my $io_start_time = 0;
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| 142 | while (my $line = <TIN>)
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| 143 | {
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| 144 | if ($line =~ /\[Started:(\d+(?:\.\d+)?)\]/)
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| 145 | {
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| 146 | $task_record->{'start'} = $1;
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| 147 | }
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| 148 | elsif ($line =~ /\[Host:([^\]]+)\]/)
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| 149 | {
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| 150 | $task_record->{'host'} = $1;
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| 151 | }
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| 152 | elsif ($line =~ /\[CPU:(\d+)\]/)
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| 153 | {
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| 154 | $task_record->{'cpu'} = $1;
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| 155 | }
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| 156 | elsif ($line =~ /\[Map:([^\>]+)=>/)
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| 157 | {
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| 158 | $task_record->{'file'} = $1;
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| 159 | }
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| 160 | elsif ($line =~ /\[IOS:(\d+)\]/)
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| 161 | {
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| 162 | $io_start_time = $1;
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| 163 | }
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| 164 | elsif ($io_start_time > 0 && $line =~ /\[IOE:(\d+)\]/)
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| 165 | {
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| 166 | $io_time += ($1 - $io_start_time);
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| 167 | $io_start_time = 0;
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| 168 | }
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| 169 | elsif ($line =~ /\[Completed:(\d+(?:\.\d+)?)\]/)
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| 170 | {
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| 171 | my $end_time = $1;
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| 172 | $task_record->{'end'} = $end_time;
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| 173 | if ($io_start_time > 0)
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| 174 | {
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| 175 | $io_time += ($end_time - $io_start_time);
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| 176 | }
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| 177 | }
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| 178 | }
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| 179 | close(TIN);
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| 180 | # Calculate CPU time (total time - IO time)
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| 181 | $task_record->{'cpu_time'} = $task_record->{'end'} - $task_record->{'start'} - $io_time;
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| 182 |
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| 183 | # We should now have the filename - use this and try and locate a
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| 184 | # convert log for this item (assuming it is multimedia, which it may
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| 185 | # not be)
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| 186 | if (defined $task_record->{'file'} && $task_record->{'file'} =~ /\/([^\/]+)\.ts/)
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| 187 | {
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| 188 | my $filename_sans_extension = $1;
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| 189 | my $convert_log = $results_path . '/convert-' . $filename_sans_extension . '.log';
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| 190 | if (-f $convert_log)
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| 191 | {
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| 192 | print '[Reading and parsing convert log]... ';
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| 193 | if (open(CLIN, '<:utf8', $convert_log))
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| 194 | {
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| 195 | my $max_percent = 0.00;
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| 196 | while (my $line = <CLIN>)
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| 197 | {
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| 198 | if ($line =~ /.*Encoding: task 1 of 1, (\d+\.\d\d) \%/)
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| 199 | {
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| 200 | my $percent = $1;
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| 201 | if ($percent > $max_percent)
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| 202 | {
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| 203 | $max_percent = $percent;
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| 204 | }
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| 205 | }
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| 206 | }
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| 207 | close(CLIN);
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| 208 | $task_record->{'percom'} = $max_percent;
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| 209 | }
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| 210 | else
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| 211 | {
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| 212 | print STDERR "Warning! Failed to open log file for reading: " . $convert_log . "\n";
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| 213 | }
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| 214 | }
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| 215 | }
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| 216 |
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| 217 | # Store this record
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| 218 | $task_records->{$task_no} = $task_record;
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| 219 | }
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| 220 | else
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| 221 | {
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| 222 | die('Error! Failed to open file for reading: ' . $task_log_path);
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| 223 | }
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| 224 | print "Done!\n";
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| 225 | }
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| 226 | }
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| 227 | close(DH);
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| 228 | }
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| 229 | else
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| 230 | {
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| 231 | die('Error! Failed to open directory for reading: ' . $results_path);
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| 232 | }
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| 233 | print ' - Processed ' . scalar(keys(%{$task_records})) . " records\n";
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| 234 |
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| 235 | # Generate compute-node records
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| 236 | print ' * Generating compute node records... ';
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| 237 | my $node_records;
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| 238 | foreach my $taskno (sort keys %{$task_records})
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| 239 | {
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| 240 | my $task_record = $task_records->{$taskno};
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| 241 | my $node_record = {'host'=>'', 'cpu'=>0, 'job' => '', 'start'=>0, 'end'=>0, 'cpu_time'=>0};
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| 242 | # - retrieve any existing record
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| 243 | my $worker_id = $task_record->{'host'} . '#' . $task_record->{'cpu'};
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| 244 | if (defined $node_records->{$worker_id})
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| 245 | {
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| 246 | $node_record = $node_records->{$worker_id};
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| 247 | }
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| 248 | if ($node_record->{'host'} eq '')
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| 249 | {
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| 250 | $node_record->{'host'} = $task_record->{'host'};
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| 251 | }
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| 252 | if ($node_record->{'cpu'} == 0)
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| 253 | {
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| 254 | $node_record->{'cpu'} = $task_record->{'cpu'};
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| 255 | }
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| 256 | if ($node_record->{'job'} eq '')
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| 257 | {
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| 258 | $node_record->{'job'} = $task_record->{'job'};
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| 259 | }
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| 260 | if ($node_record->{'start'} == 0 || $task_record->{'start'} < $node_record->{'start'})
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| 261 | {
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| 262 | $node_record->{'start'} = $task_record->{'start'};
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| 263 | }
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| 264 | if ($node_record->{'end'} == 0 || $task_record->{'end'} > $node_record->{'end'})
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| 265 | {
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| 266 | $node_record->{'end'} = $task_record->{'end'};
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| 267 | }
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| 268 | $node_record->{'cpu_time'} += $task_record->{'cpu_time'};
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| 269 | # - store it
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| 270 | $node_records->{$worker_id} = $node_record;
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| 271 | }
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| 272 | print "Done!\n";
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| 273 |
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| 274 | # Write out CSV of all information
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| 275 | my $report_csv_path = $results_path . '/timing.csv';
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| 276 | if (open(CSVOUT, '>:utf8', $report_csv_path))
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| 277 | {
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| 278 | my $row_counter = 1;
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| 279 | # Header
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| 280 | print CSVOUT "id,name,hostname,start,end,cputime,dl,pid,filename,percom\n";
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| 281 | # Master Record
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| 282 | print CSVOUT $row_counter . ',M0,' . $job_record->{'host'} . ',' . $job_record->{'start'} . ',' . $job_record->{'end'} . ',' . ($job_record->{'cpu_time'} / 1000) . ",0,0,NA,NA\n";
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| 283 | $row_counter++;
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| 284 | # For each compute node record
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| 285 | my $known_workers = {};
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| 286 | foreach my $worker_id (natsort(keys(%{$node_records})))
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| 287 | {
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| 288 | my $node_record = $node_records->{$worker_id};
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| 289 | my $node_id = $row_counter;
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| 290 | $row_counter++;
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| 291 | my $csv_worker_id = 'W' . $node_record->{'cpu'};
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| 292 | # Ensure we haven't used this id before - this should never trigger for
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| 293 | # multicore CPUs, but will for clusters (as nearly all nodes will report
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| 294 | # themselves as 'W0')
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| 295 | if (defined $known_workers->{$csv_worker_id})
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| 296 | {
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| 297 | # Find a different worker id as this one is already in use
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| 298 | my $counter = 0;
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| 299 | $csv_worker_id = 'W' . $counter;
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| 300 | while (defined $known_workers->{$csv_worker_id})
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| 301 | {
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| 302 | $counter++;
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| 303 | $csv_worker_id = 'W' . $counter;
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| 304 | }
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| 305 | }
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| 306 | $known_workers->{$csv_worker_id} = 1;
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| 307 | print CSVOUT $node_id . ',' . $csv_worker_id . ',' . $node_record->{'host'} . ',' . $node_record->{'start'} . ',' . $node_record->{'end'} . ',' . $node_record->{'cpu_time'} . ",0,1,NA,NA\n";
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| 308 | # List the child task records
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| 309 | foreach my $taskno (sort keys %{$task_records})
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| 310 | {
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| 311 | my $task_record = $task_records->{$taskno};
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| 312 | if ($task_record->{'host'} . '#' . $task_record->{'cpu'} eq $worker_id)
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| 313 | {
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| 314 | print CSVOUT $row_counter . ',T' . ($task_record->{'task'} + 0) . ',' . $task_record->{'host'} . ',' . $task_record->{'start'} . ',' . $task_record->{'end'} . ',' . $task_record->{'cpu_time'} . ',' . $task_record->{'data_locality'} . ',' . $node_id . ',' . $task_record->{'file'} . ',' . $task_record->{'percom'} . "\n";
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| 315 | $row_counter++;
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| 316 | }
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| 317 | }
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| 318 | }
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| 319 | close(CSVOUT);
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| 320 | }
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| 321 | else
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| 322 | {
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| 323 | die('Error! Failed to open file for writing: ' . $report_csv_path);
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| 324 | }
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| 325 |
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| 326 | print "Complete!\n\n";
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| 327 | exit;
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| 328 |
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