1 | #!/usr/bin/perl -w
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2 |
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3 | BEGIN
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4 | {
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5 | if (!defined $ENV{'GSDLHOME'}) {
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6 | print STDERR "Environment variable GSDLHOME not set.\n";
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7 | print STDERR " Have you sourced Greenstone's 'setup.bash' file?\n";
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8 | exit 1;
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9 | }
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10 |
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11 | if (!defined $ENV{'JAVA_HOME'}) {
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12 | print STDERR "Environment variable JAVA_HOME not set.\n";
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13 | print STDERR "Needed by Fedora command line scripts.\n";
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14 | exit 1;
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15 | }
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16 |
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17 | $ENV{'FEDORA_HOSTNAME'} = "localhost" if (!defined $ENV{'FEDORA_HOSTNAME'});
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18 | $ENV{'FEDORA_SERVER_PORT'} = "8080" if (!defined $ENV{'FEDORA_SERVER_PORT'});
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19 | $ENV{'FEDORA_USER'} = "fedoraAdmin" if (!defined $ENV{'FEDORA_USER'});
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20 | $ENV{'FEDORA_PASS'} = "fedoraAdmin" if (!defined $ENV{'FEDORA_PASS'});
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21 | $ENV{'FEDORA_PROTOCOL'} = "http" if (!defined $ENV{'FEDORA_PROTOCOL'});
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22 | $ENV{'FEDORA_PID_NAMESPACE'} = "greenstone" if (!defined $ENV{'FEDORA_PID_NAMESPACE'});
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23 | $ENV{'FEDORA_PREFIX'} = "/fedora" if (!defined $ENV{'FEDORA_PREFIX'});
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24 |
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25 | unshift (@INC, "$ENV{'GSDLHOME'}/perllib/");
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26 |
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27 | }
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28 |
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29 |
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30 | use strict;
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31 | no strict 'refs'; # allow filehandles to be variables and vice versa
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32 | no strict 'subs'; # allow barewords (e.g. STDERR) as function arguments
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33 |
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34 | use util;
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35 | use gsprintf 'gsprintf';
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36 | use printusage;
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37 | use parse2;
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38 | use cfgread;
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39 | use colcfg;
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40 |
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41 | use g2futil;
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42 |
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43 | use dbutil;
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44 |
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45 | my $arguments =
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46 | [
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47 | { 'name' => "verbosity",
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48 | 'desc' => "Level of verbosity generated",
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49 | 'type' => "string",
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50 | 'deft' => '1',
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51 | 'reqd' => "no",
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52 | 'hiddengli' => "no" },
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53 | { 'name' => "hostname",
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54 | 'desc' => "Domain hostname of Fedora server",
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55 | 'type' => "string",
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56 | 'deft' => $ENV{'FEDORA_HOSTNAME'},
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57 | 'reqd' => "no",
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58 | 'hiddengli' => "no" },
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59 | { 'name' => "port",
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60 | 'desc' => "Port that the Fedora server is running on.",
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61 | 'type' => "string",
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62 | 'deft' => $ENV{'FEDORA_SERVER_PORT'},
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63 | 'reqd' => "no",
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64 | 'hiddengli' => "no" },
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65 | { 'name' => "username",
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66 | 'desc' => "Fedora admin username",
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67 | 'type' => "string",
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68 | 'deft' => $ENV{'FEDORA_USER'},
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69 | 'reqd' => "no",
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70 | 'hiddengli' => "no" },
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71 | { 'name' => "password",
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72 | 'desc' => "Fedora admin password",
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73 | 'type' => "string",
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74 | 'deft' => $ENV{'FEDORA_PASS'},
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75 | 'reqd' => "no",
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76 | 'hiddengli' => "no" },
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77 | { 'name' => "protocol",
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78 | 'desc' => "Fedora protocol, e.g. 'http' or 'https'",
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79 | 'type' => "string",
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80 | 'deft' => $ENV{'FEDORA_PROTOCOL'},
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81 | 'reqd' => "no",
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82 | 'hiddengli' => "no" },
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83 | { 'name' => "pidnamespace",
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84 | 'desc' => "Fedora prefix for PIDs",
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85 | 'type' => "string",
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86 | 'deft' => $ENV{'FEDORA_PID_NAMESPACE'},
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87 | 'reqd' => "no",
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88 | 'hiddengli' => "no" },
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89 | { 'name' => "gli",
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90 | 'desc' => "",
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91 | 'type' => "flag",
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92 | 'reqd' => "no",
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93 | 'hiddengli' => "yes" },
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94 | { 'name' => "xml",
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95 | 'desc' => "{scripts.xml}",
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96 | 'type' => "flag",
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97 | 'reqd' => "no",
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98 | 'hiddengli' => "yes" },
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99 | { 'name' => "removeold",
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100 | 'desc' => "{import.removeold}",
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101 | 'type' => "flag",
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102 | 'reqd' => "no",
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103 | 'modegli' => "3" },
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104 | { 'name' => "language",
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105 | 'desc' => "{scripts.language}",
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106 | 'type' => "string",
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107 | 'reqd' => "no",
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108 | 'modegli' => "3" },
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109 | { 'name' => "collectdir",
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110 | 'desc' => "{import.collectdir}",
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111 | 'type' => "string",
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112 | 'deft' => "",
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113 | 'reqd' => "no",
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114 | 'hiddengli' => "yes" }
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115 | ];
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116 |
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117 | my $prog_options
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118 | = { 'name' => "g2fbuildcol.pl",
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119 | 'desc' => "Ingest Greenstone directory of FedoraMETS documents into Fedora",
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120 | 'args' => $arguments };
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121 |
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122 |
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123 | sub main
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124 | {
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125 | my (@ARGV) = @_;
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126 |
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127 | my $GSDLHOME = $ENV{'GSDLHOME'};
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128 |
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129 |
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130 | my $options = {};
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131 | # general options available to all plugins
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132 | my $intArgLeftinAfterParsing = parse2::parse(\@ARGV,$arguments,$options,"allow_extra_options");
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133 |
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134 | # Something went wrong with parsing
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135 | if ($intArgLeftinAfterParsing ==-1)
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136 | {
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137 | &PrintUsage::print_txt_usage($prog_options, "[options] greenstone-col");
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138 | die "\n";
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139 | }
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140 |
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141 | my $xml = $options->{'xml'};
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142 | my $gli = $options->{'gli'};
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143 |
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144 | if ($intArgLeftinAfterParsing != 1)
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145 | {
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146 | if ($xml) {
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147 | &PrintUsage::print_xml_usage($prog_options);
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148 | print "\n";
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149 | return;
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150 | }
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151 | else {
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152 | &PrintUsage::print_txt_usage($prog_options, "[options] greenstone-col");
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153 | print "\n";
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154 | return;
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155 | }
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156 |
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157 | }
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158 |
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159 | my $gs_col = $ARGV[0];
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160 |
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161 | my $verbosity = $options->{'verbosity'};
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162 | my $hostname = $options->{'hostname'};
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163 | my $port = $options->{'port'};
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164 | my $username = $options->{'username'};
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165 | my $password = $options->{'password'};
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166 | my $protocol = $options->{'protocol'};
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167 | my $pid_namespace = $options->{'pidnamespace'};
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168 |
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169 | # The following are needed in the FedoraMETS plugout
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170 | $ENV{'FEDORA_HOSTNAME'} = $hostname;
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171 | $ENV{'FEDORA_SERVER_PORT'} = $port;
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172 |
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173 | my $collectdir = $options->{'collectdir'};
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174 |
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175 | if (!$collectdir) {
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176 | if($ENV{'GSDL3HOME'}) {
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177 | $collectdir = &util::filename_cat($ENV{'GSDL3HOME'},"sites","localsite","collect");
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178 | } else {
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179 | $collectdir = &util::filename_cat($ENV{'GSDLHOME'},"collect");
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180 | }
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181 | }
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182 |
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183 | my $full_gs_col = &util::filename_cat($collectdir,$gs_col);
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184 |
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185 |
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186 | if (!-e $full_gs_col ) {
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187 | print STDERR "Unable to find Greenstone collection $full_gs_col\n";
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188 | exit 1;
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189 | }
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190 |
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191 | ## my $archives_dir = &util::filename_cat($full_gs_col,"archives");
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192 | my $export_dir = &util::filename_cat($full_gs_col,"export");
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193 |
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194 |
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195 | print "***\n";
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196 | print "* Ingesting Greenstone processed files into Fedora $pid_namespace\n";
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197 | print "***\n";
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198 |
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199 | # Following falls foul of Schematron rule checking
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200 | my $fd_add_prog = "fedora-ingest";
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201 | # my $fd_add_cmd;
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202 | # $fd_add_args = "dir $export_dir O metslikefedora1 $hostname:$port $username $password \\\n";
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203 | # $fd_add_args .= " \"Automated_ingest_by_gs2fed.pl\"";
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204 |
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205 | # &g2futil::run_cmd($fd_add_prog,$fd_add_args,$options);
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206 |
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207 |
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208 | # => Ingest individually!
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209 |
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210 | # set up fedoragsearch for updating the index upon ingesting documents
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211 | my $fedoragsearch_webapp = &g2futil::gsearch_webapp_folder();
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212 |
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213 | # need the username and password preset in order to run fedoraGSearch's RESTClient script
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214 | # this assumes that the fedoragsearch authentication details are the same as for fedora
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215 | if (defined $fedoragsearch_webapp) {
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216 | $ENV{'fgsUserName'} = $options->{'username'};
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217 | $ENV{'fgsPassword'} = $options->{'password'};
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218 | }
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219 |
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220 | if (opendir(DIR, $export_dir)) {
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221 | closedir DIR;
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222 | ## my @hash_dirs = grep { /\.dir$/ } readdir(DIR);
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223 | my @hash_dirs = &g2futil::get_all_hash_dirs($export_dir);
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224 |
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225 |
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226 | # for each hash dir, purge its respective PID
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227 | foreach my $hd (@hash_dirs) {
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228 |
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229 | my $hash_id = &g2futil::get_hash_id($hd);
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230 |
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231 | if (defined $hash_id) {
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232 |
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233 | my $pid = "$pid_namespace:$gs_col-$hash_id";
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234 |
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235 |
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236 | my $dsinfo_status = &g2futil::run_datastore_info($pid,$options);
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237 |
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238 | if ($dsinfo_status == 0) {
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239 | # first remove the doc from the gsearch index before removing it from the fedora repository
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240 | print " deleting $pid from GSearch index\n";
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241 | &g2futil::run_delete_from_index($fedoragsearch_webapp,$pid,$options) if defined $fedoragsearch_webapp;
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242 |
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243 | print " $pid being updated.\n";
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244 | &g2futil::run_purge($pid,$options);
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245 | }
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246 | else {
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247 | print " $pid not present.\n";
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248 | }
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249 | }
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250 |
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251 | my $docmets_filename
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252 | = &util::filename_cat($hd,"docmets.xml");
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253 |
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254 | print STDERR "<Build>\n" if $gli;
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255 |
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256 | print "Ingesting $docmets_filename\n";
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257 |
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258 | my $status = &g2futil::run_ingest($docmets_filename,$options);
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259 |
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260 | # if the document was ingested into Fedora successfully, index it with GSearch next
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261 | if($status == 0) {
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262 | if(defined $hash_id) {
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263 | my $pid = "$pid_namespace:$gs_col-$hash_id";
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264 | # now update the fedoragsearch index with the newly ingested document
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265 | &g2futil::run_update_index($fedoragsearch_webapp,$pid,$options) if defined $fedoragsearch_webapp;
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266 | }
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267 | }
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268 |
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269 | print STDERR "</Build>\n" if $gli;
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270 |
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271 | }
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272 | }
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273 | else {
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274 | print STDERR "Error: Unable to open directory $export_dir: $!\n";
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275 | exit 1;
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276 | }
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277 |
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278 |
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279 | # can possibly use inexport instead of running buildcol.pl through system()
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280 | print STDERR "**** Just for now, also run Greenstone's buildcol.pl\n";
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281 |
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282 | my $gs_opts = " -verbosity $verbosity";
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283 | $gs_opts .= " -gli" if ($gli);
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284 | $gs_opts .= " -collectdir \"$collectdir\"" if ($collectdir);
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285 | $gs_opts .= " -mode infodb";
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286 |
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287 | my $gs_buildcol_arguments = "$gs_opts $gs_col";
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288 |
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289 | &g2futil::run_cmd("buildcol.pl", $gs_buildcol_arguments, $options);
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290 |
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291 | # read in collect cfg file to work out db type
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292 | my $collectcfg = &util::filename_cat ($collectdir, $gs_col, "etc", "collectionConfig.xml");
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293 | #print STDERR "**** collectcfg file: $collectcfg\n";
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294 | unless(open(FIN, "<$collectcfg")) {
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295 | print STDERR "g2f-buildcol.pl: Unable to open $collectcfg...ERROR: $!\n";
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296 | exit 1;
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297 | }
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298 | close(FIN);
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299 |
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300 | # for now we assume GS3, since that's what the following gets implemented for
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301 | my $collect_cfg = &colcfg::read_collection_cfg ($collectcfg, "gs3");
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302 | # get the database type for this collection from its configuration file (may be undefined)
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303 | my $infodbtype = $collect_cfg->{'infodbtype'} || &dbutil::get_default_infodb_type();
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304 |
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305 | # open .gdbm database file in building/text/$colname.gdb, using dbutil
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306 | my $colname = $gs_col;
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307 | $colname =~ s/(:?\\|\/)(.*)$/$1/; # remove any collect group from collection name to get tailname
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308 |
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309 | my $building_txt_dir = &util::filename_cat ($collectdir, $gs_col, "building", "text");
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310 | my $building_txt_db = &dbutil::get_infodb_file_path($infodbtype, "$colname", $building_txt_dir);
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311 |
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312 | # foreach key that matches http://dir1/dir2/....file.xxx
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313 | my $db_keys = {};
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314 | &dbutil::read_infodb_keys($infodbtype,$building_txt_db, $db_keys);
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315 |
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316 | foreach my $key (keys %$db_keys) {
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317 | if($key =~ m@^http://@) {
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318 |
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319 | # get value for the key
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320 | my $src_rec = &dbutil::read_infodb_entry($infodbtype,$building_txt_db, $key);
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321 | my $OID_hash_value = $src_rec->{'section'}->[0];
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322 | $OID_hash_value = "$pid_namespace:$gs_col-".$OID_hash_value; # convert to fedoraPID
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323 |
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324 | # its fedora pid = "greenstone-http:$colname-http:||dir|file.xxx"
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325 | # except that fedorapids don't like extra colons and don't like |
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326 | my $fedora_identifier = "$pid_namespace-http:$gs_col-$key";
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327 | # CAN'T HAVE | OR : (as in "http:||one|two.html") in fedoraPID
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328 | $key =~ s@/@_@g;
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329 | $key =~ s@:@-@g;
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330 | my $fedora_pid = "$pid_namespace-http:$gs_col-$key";
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331 |
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332 | # To run fedora ingest on the new file need to have sensible
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333 | # filenames that won't offend windows
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334 | my $fedora_key_file_name = "$fedora_pid";
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335 | $fedora_key_file_name =~ s@\.@-@g;
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336 | $fedora_key_file_name =~ s/\:/=/g;
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337 | $fedora_key_file_name .= ".xml";
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338 | # print STDERR "+++++ fpid: $fedora_pid, fedora-key filename: $fedora_key_file_name\n";
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339 |
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340 | # write out a FedoraMets File for this key (in /tmp)
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341 | # -> it has one metadata value, which is 'dc:title' = HASHxxxxxx
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342 |
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343 | # The HASHID shouldn't be the title: then will have
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344 | # duplicate titles and it will be hard to search for
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345 | # unique ones. What about making the filename the
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346 | # dc.title and the HASHID the dc.identifier
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347 |
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348 | my $contents = "<?xml version=\"1.0\" encoding=\"UTF-8\" standalone=\"no\"?>\n";
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349 | $contents .= "<mets:mets xmlns:mets=\"http://www.loc.gov/METS/\"\n";
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350 | $contents .= " xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\"\n";
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351 | $contents .= " xmlns:gsdl3=\"http://www.greenstone.org/namespace/gsdlmetadata/1.0/\"\n";
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352 | $contents .= " xmlns:xlink=\"http://www.w3.org/1999/xlink\"\n";
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353 | $contents .= " xsi:schemaLocation=\"http://www.loc.gov/METS/\n";
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354 | $contents .= " http://www.loc.gov/standards/mets/mets.xsd\n";
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355 | $contents .= " http://www.greenstone.org/namespace/gsdlmetadata/1.0/\n";
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356 | $contents .= " http://www.greenstone.org/namespace/gsdlmetadata/1.0/gsdl_metadata.xsd\"\n";
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357 | $contents .= " OBJID=\"$fedora_pid\"\n";
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358 | # $contents .= " OBJID=\"greenstone:$gs_col-HASH1f814d07252c354039ee11\"\n";
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359 | $contents .= " TYPE=\"FedoraObject\" LABEL=\"$fedora_pid\" EXT_VERSION=\"1.1\">\n";
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360 | $contents .= "<mets:metsHdr RECORDSTATUS=\"A\"/>\n";
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361 | $contents .= " <mets:amdSec ID=\"DC\" >\n";
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362 | $contents .= " <mets:techMD ID=\"DC.0\">\n";
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363 | $contents .= " <mets:mdWrap LABEL=\"Metadata\" MDTYPE=\"OTHER\" OTHERMDTYPE=\"gsdl3\" ID=\"DCgsdl1\">\n";
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364 | $contents .= " <mets:xmlData>\n";
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365 | $contents .= " <oai_dc:dc xmlns:dc=\"http://purl.org/dc/elements/1.1/\" xmlns:oai_dc=\"http://www.openarchives.org/OAI/2.0/oai_dc/\" >\n";
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366 | $contents .= " <dc:title>$OID_hash_value</dc:title>\n";
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367 | # $contents .= " <dc:identifier>$fedora_identifier</dc:identifier>\n";
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368 | $contents .= " </oai_dc:dc>\n";
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369 | $contents .= " </mets:xmlData>\n";
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370 | $contents .= " </mets:mdWrap>\n";
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371 | $contents .= " </mets:techMD>\n";
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372 | $contents .= " </mets:amdSec>\n";
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373 | $contents .= "</mets:mets>\n";
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374 |
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375 |
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376 | # write out the file and then run fedora ingest on that file
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377 | # The file gets purged in g2f-import.pl, so don't remove it from export dir now
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378 | my $fedora_key_file_path = &util::filename_cat($export_dir, $fedora_key_file_name);
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379 | unless(open(FOUT, ">$fedora_key_file_path")) {
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380 | print STDERR "g2f-buildcol.pl: Unable to open $fedora_key_file_path...ERROR: $!\n";
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381 | exit 1;
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382 | }
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383 | print FOUT $contents;
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384 | close(FOUT);
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385 |
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386 | print STDERR "<Build>\n" if $gli;
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387 | print STDERR "Ingesting $fedora_key_file_name\n";
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388 | # print STDERR "#### ".join(",", %$options)."\n";
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389 |
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390 | &g2futil::run_ingest($fedora_key_file_path,$options);
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391 | print STDERR "</Build>\n" if $gli;
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392 | }
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393 |
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394 | }
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395 |
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396 |
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397 | # If successful!!! Then need to think about:
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398 | # [CLX] nodes
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399 | # Doing this with FedoraMETSPlugin
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400 |
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401 |
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402 | # for the Greenstone reader interface to make the new Fedora collection available,
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403 | # need to write out buildConfig.xml with FedoraServiceProxy as a new ServiceRack element
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404 | # Kathy thinks it's better to create a buildConfig.xml than put it in collectionConfig.xml
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405 |
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406 | my $indexdir = &util::filename_cat ($collectdir, $gs_col, "index");
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407 | &util::mk_dir($indexdir) unless &util::dir_exists($indexdir);
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408 |
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409 | my $buildcfg = &util::filename_cat ($indexdir, "buildConfig.xml");
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410 | if(-e $buildcfg) {
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411 | print STDERR "***** $buildcfg already exists for this fedora collection.\n";
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412 | print STDERR "***** Not modifying it to insert a FedoraServiceProxy ServiceRack.\n";
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413 | }
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414 | else { # or do I just have a template buildConfig.xml that I copy over?
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415 |
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416 | my $contents = "<buildConfig>\n";
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417 | $contents .= " <metadataList/>\n";
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418 | $contents .= " <serviceRackList>\n";
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419 | $contents .= " <serviceRack name=\"FedoraServiceProxy\" />\n";
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420 | $contents .= " </serviceRackList>\n";
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421 | $contents .= "</buildConfig>\n";
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422 |
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423 | #print STDERR "**** buildcfg file: $buildcfg\n";
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424 | unless(open(FOUT, ">$buildcfg")) {
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425 | print STDERR "g2f-buildcol.pl: Unable to open $buildcfg...ERROR: $!\n";
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426 | exit 1;
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427 | }
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428 | print FOUT $contents;
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429 | close(FOUT);
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430 | }
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431 | }
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432 |
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433 | &main(@ARGV);
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434 |
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435 |
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436 |
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