| 1 | #!/usr/bin/perl -w
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| 2 |
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| 3 | BEGIN
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| 4 | {
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| 5 | if (!defined $ENV{'GSDLHOME'}) {
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| 6 | print STDERR "Environment variable GSDLHOME not set.\n";
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| 7 | print STDERR " Have you sourced Greenstone's 'setup.bash' file?\n";
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| 8 | exit 1;
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| 9 | }
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| 10 |
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| 11 | if (!defined $ENV{'JAVA_HOME'}) {
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| 12 | print STDERR "Environment variable JAVA_HOME not set.\n";
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| 13 | print STDERR "Needed by Fedora command line scripts.\n";
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| 14 | exit 1;
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| 15 | }
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| 16 |
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| 17 | $ENV{'FEDORA_HOSTNAME'} = "localhost" if (!defined $ENV{'FEDORA_HOSTNAME'});
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| 18 | $ENV{'FEDORA_SERVER_PORT'} = "8080" if (!defined $ENV{'FEDORA_SERVER_PORT'});
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| 19 | $ENV{'FEDORA_USER'} = "fedoraAdmin" if (!defined $ENV{'FEDORA_USER'});
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| 20 | $ENV{'FEDORA_PASS'} = "fedoraAdmin" if (!defined $ENV{'FEDORA_PASS'});
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| 21 | $ENV{'FEDORA_PROTOCOL'} = "http" if (!defined $ENV{'FEDORA_PROTOCOL'});
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| 22 | $ENV{'FEDORA_PID_NAMESPACE'} = "greenstone" if (!defined $ENV{'FEDORA_PID_NAMESPACE'});
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| 23 | $ENV{'FEDORA_PREFIX'} = "/fedora" if (!defined $ENV{'FEDORA_PREFIX'});
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| 24 |
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| 25 | unshift (@INC, "$ENV{'GSDLHOME'}/perllib/");
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| 26 |
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| 27 | }
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| 28 |
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| 29 |
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| 30 | use strict;
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| 31 | no strict 'refs'; # allow filehandles to be variables and vice versa
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| 32 | no strict 'subs'; # allow barewords (e.g. STDERR) as function arguments
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| 33 |
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| 34 | use util;
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| 35 | use gsprintf 'gsprintf';
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| 36 | use printusage;
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| 37 | use parse2;
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| 38 | use cfgread;
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| 39 | use colcfg;
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| 40 |
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| 41 | use g2futil;
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| 42 |
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| 43 | use dbutil;
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| 44 |
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| 45 | my $arguments =
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| 46 | [
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| 47 | { 'name' => "verbosity",
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| 48 | 'desc' => "Level of verbosity generated",
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| 49 | 'type' => "string",
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| 50 | 'deft' => '1',
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| 51 | 'reqd' => "no",
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| 52 | 'hiddengli' => "no" },
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| 53 | { 'name' => "hostname",
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| 54 | 'desc' => "Domain hostname of Fedora server",
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| 55 | 'type' => "string",
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| 56 | 'deft' => $ENV{'FEDORA_HOSTNAME'},
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| 57 | 'reqd' => "no",
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| 58 | 'hiddengli' => "no" },
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| 59 | { 'name' => "port",
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| 60 | 'desc' => "Port that the Fedora server is running on.",
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| 61 | 'type' => "string",
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| 62 | 'deft' => $ENV{'FEDORA_SERVER_PORT'},
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| 63 | 'reqd' => "no",
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| 64 | 'hiddengli' => "no" },
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| 65 | { 'name' => "username",
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| 66 | 'desc' => "Fedora admin username",
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| 67 | 'type' => "string",
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| 68 | 'deft' => $ENV{'FEDORA_USER'},
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| 69 | 'reqd' => "no",
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| 70 | 'hiddengli' => "no" },
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| 71 | { 'name' => "password",
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| 72 | 'desc' => "Fedora admin password",
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| 73 | 'type' => "string",
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| 74 | 'deft' => $ENV{'FEDORA_PASS'},
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| 75 | 'reqd' => "no",
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| 76 | 'hiddengli' => "no" },
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| 77 | { 'name' => "protocol",
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| 78 | 'desc' => "Fedora protocol, e.g. 'http' or 'https'",
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| 79 | 'type' => "string",
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| 80 | 'deft' => $ENV{'FEDORA_PROTOCOL'},
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| 81 | 'reqd' => "no",
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| 82 | 'hiddengli' => "no" },
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| 83 | { 'name' => "pidnamespace",
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| 84 | 'desc' => "Fedora prefix for PIDs",
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| 85 | 'type' => "string",
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| 86 | 'deft' => $ENV{'FEDORA_PID_NAMESPACE'},
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| 87 | 'reqd' => "no",
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| 88 | 'hiddengli' => "no" },
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| 89 | { 'name' => "gli",
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| 90 | 'desc' => "",
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| 91 | 'type' => "flag",
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| 92 | 'reqd' => "no",
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| 93 | 'hiddengli' => "yes" },
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| 94 | { 'name' => "xml",
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| 95 | 'desc' => "{scripts.xml}",
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| 96 | 'type' => "flag",
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| 97 | 'reqd' => "no",
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| 98 | 'hiddengli' => "yes" },
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| 99 | { 'name' => "removeold",
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| 100 | 'desc' => "{import.removeold}",
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| 101 | 'type' => "flag",
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| 102 | 'reqd' => "no",
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| 103 | 'modegli' => "3" },
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| 104 | { 'name' => "language",
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| 105 | 'desc' => "{scripts.language}",
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| 106 | 'type' => "string",
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| 107 | 'reqd' => "no",
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| 108 | 'modegli' => "3" },
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| 109 | { 'name' => "collectdir",
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| 110 | 'desc' => "{import.collectdir}",
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| 111 | 'type' => "string",
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| 112 | 'deft' => "",
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| 113 | 'reqd' => "no",
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| 114 | 'hiddengli' => "yes" }
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| 115 | ];
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| 116 |
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| 117 | my $prog_options
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| 118 | = { 'name' => "g2fbuildcol.pl",
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| 119 | 'desc' => "Ingest Greenstone directory of FedoraMETS documents into Fedora",
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| 120 | 'args' => $arguments };
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| 121 |
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| 122 |
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| 123 | sub main
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| 124 | {
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| 125 | my (@ARGV) = @_;
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| 126 |
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| 127 | my $GSDLHOME = $ENV{'GSDLHOME'};
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| 128 |
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| 129 |
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| 130 | my $options = {};
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| 131 | # general options available to all plugins
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| 132 | my $intArgLeftinAfterParsing = parse2::parse(\@ARGV,$arguments,$options,"allow_extra_options");
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| 133 |
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| 134 | # Something went wrong with parsing
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| 135 | if ($intArgLeftinAfterParsing ==-1)
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| 136 | {
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| 137 | &PrintUsage::print_txt_usage($prog_options, "[options] greenstone-col");
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| 138 | die "\n";
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| 139 | }
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| 140 |
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| 141 | my $xml = $options->{'xml'};
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| 142 | my $gli = $options->{'gli'};
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| 143 |
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| 144 | if ($intArgLeftinAfterParsing != 1)
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| 145 | {
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| 146 | if ($xml) {
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| 147 | &PrintUsage::print_xml_usage($prog_options);
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| 148 | print "\n";
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| 149 | return;
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| 150 | }
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| 151 | else {
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| 152 | &PrintUsage::print_txt_usage($prog_options, "[options] greenstone-col");
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| 153 | print "\n";
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| 154 | return;
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| 155 | }
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| 156 |
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| 157 | }
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| 158 |
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| 159 | my $gs_col = $ARGV[0];
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| 160 |
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| 161 | my $verbosity = $options->{'verbosity'};
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| 162 | my $hostname = $options->{'hostname'};
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| 163 | my $port = $options->{'port'};
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| 164 | my $username = $options->{'username'};
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| 165 | my $password = $options->{'password'};
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| 166 | my $protocol = $options->{'protocol'};
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| 167 | my $pid_namespace = $options->{'pidnamespace'};
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| 168 |
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| 169 | # The following are needed in the FedoraMETS plugout
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| 170 | $ENV{'FEDORA_HOSTNAME'} = $hostname;
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| 171 | $ENV{'FEDORA_SERVER_PORT'} = $port;
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| 172 |
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| 173 | my $collectdir = $options->{'collectdir'};
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| 174 |
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| 175 | if (!$collectdir) {
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| 176 | if($ENV{'GSDL3HOME'}) {
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| 177 | $collectdir = &util::filename_cat($ENV{'GSDL3HOME'},"sites","localsite","collect");
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| 178 | } else {
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| 179 | $collectdir = util::filename_cat($ENV{'GSDLHOME'},"collect");
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| 180 | }
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| 181 | }
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| 182 |
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| 183 | my $full_gs_col = util::filename_cat($collectdir,$gs_col);
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| 184 |
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| 185 |
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| 186 | if (!-e $full_gs_col ) {
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| 187 | print STDERR "Unable to find Greenstone collection $full_gs_col\n";
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| 188 | exit 1;
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| 189 | }
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| 190 |
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| 191 | ## my $archives_dir = &util::filename_cat($full_gs_col,"archives");
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| 192 | my $export_dir = &util::filename_cat($full_gs_col,"export");
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| 193 |
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| 194 |
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| 195 | print "***\n";
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| 196 | print "* Ingesting Greenstone processed files into Fedora $pid_namespace\n";
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| 197 | print "***\n";
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| 198 |
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| 199 | # Following falls foul of Schematron rule checking
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| 200 | my $fd_add_prog = "fedora-ingest";
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| 201 | # my $fd_add_cmd;
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| 202 | # $fd_add_args = "dir $export_dir O metslikefedora1 $hostname:$port $username $password \\\n";
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| 203 | # $fd_add_args .= " \"Automated_ingest_by_gs2fed.pl\"";
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| 204 |
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| 205 | # &g2futil::run_cmd($fd_add_prog,$fd_add_args,$options);
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| 206 |
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| 207 |
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| 208 | # => Ingest individually!
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| 209 |
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| 210 | # set up fedoragsearch for updating the index upon ingesting documents
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| 211 | my $fedoragsearch_webapp = &g2futil::gsearch_webapp_folder();
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| 212 |
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| 213 | # need the username and password preset in order to run fedoraGSearch's RESTClient script
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| 214 | # this assumes that the fedoragsearch authentication details are the same as for fedora
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| 215 | if (defined $fedoragsearch_webapp) {
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| 216 | $ENV{'fgsUserName'} = $options->{'username'};
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| 217 | $ENV{'fgsPassword'} = $options->{'password'};
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| 218 | }
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| 219 |
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| 220 | if (opendir(DIR, $export_dir)) {
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| 221 | closedir DIR;
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| 222 | ## my @hash_dirs = grep { /\.dir$/ } readdir(DIR);
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| 223 | my @hash_dirs = &g2futil::get_all_hash_dirs($export_dir);
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| 224 |
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| 225 |
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| 226 | # for each hash dir, purge its respective PID
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| 227 | foreach my $hd (@hash_dirs) {
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| 228 |
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| 229 | my $hash_id = &g2futil::get_hash_id($hd);
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| 230 |
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| 231 | if (defined $hash_id) {
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| 232 |
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| 233 | my $pid = "$pid_namespace:$gs_col-$hash_id";
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| 234 |
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| 235 |
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| 236 | my $dsinfo_status = &g2futil::run_datastore_info($pid,$options);
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| 237 |
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| 238 | if ($dsinfo_status == 0) {
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| 239 | # first remove the doc from the gsearch index before removing it from the fedora repository
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| 240 | print " deleting $pid from GSearch index\n";
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| 241 | &g2futil::run_delete_from_index($fedoragsearch_webapp,$pid,$options) if defined $fedoragsearch_webapp;
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| 242 |
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| 243 | print " $pid being updated.\n";
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| 244 | &g2futil::run_purge($pid,$options);
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| 245 | }
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| 246 | else {
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| 247 | print " $pid not present.\n";
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| 248 | }
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| 249 | }
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| 250 |
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| 251 | my $docmets_filename
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| 252 | = &util::filename_cat($hd,"docmets.xml");
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| 253 |
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| 254 | print STDERR "<Build>\n" if $gli;
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| 255 |
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| 256 | print "Ingesting $docmets_filename\n";
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| 257 |
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| 258 | my $status = &g2futil::run_ingest($docmets_filename,$options);
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| 259 |
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| 260 | # if the document was ingested into Fedora successfully, index it with GSearch next
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| 261 | if($status == 0) {
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| 262 | if(defined $hash_id) {
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| 263 | my $pid = "$pid_namespace:$gs_col-$hash_id";
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| 264 | # now update the fedoragsearch index with the newly ingested document
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| 265 | &g2futil::run_update_index($fedoragsearch_webapp,$pid,$options) if defined $fedoragsearch_webapp;
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| 266 | }
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| 267 | }
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| 268 |
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| 269 | print STDERR "</Build>\n" if $gli;
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| 270 |
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| 271 | }
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| 272 | }
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| 273 | else {
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| 274 | print STDERR "Error: Unable to open directory $export_dir: $!\n";
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| 275 | exit 1;
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| 276 | }
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| 277 |
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| 278 |
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| 279 | # can possibly use inexport instead of running buildcol.pl through system()
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| 280 | print STDERR "**** Just for now, also run Greenstone's buildcol.pl\n";
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| 281 |
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| 282 | my $gs_opts = " -verbosity $verbosity";
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| 283 | $gs_opts .= " -gli" if ($gli);
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| 284 | $gs_opts .= " -collectdir \"$collectdir\"" if ($collectdir);
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| 285 | $gs_opts .= " -mode infodb";
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| 286 |
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| 287 | my $gs_buildcol_arguments = "$gs_opts $gs_col";
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| 288 |
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| 289 | &g2futil::run_cmd("buildcol.pl", $gs_buildcol_arguments, $options);
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| 290 |
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| 291 | # read in collect cfg file to work out db type
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| 292 | my $collectcfg = &util::filename_cat ($collectdir, $gs_col, "etc", "collectionConfig.xml");
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| 293 | #print STDERR "**** collectcfg file: $collectcfg\n";
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| 294 | unless(open(FIN, "<$collectcfg")) {
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| 295 | print STDERR "g2f-buildcol.pl: Unable to open $collectcfg...ERROR: $!\n";
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| 296 | exit 1;
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| 297 | }
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| 298 | close(FIN);
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| 299 |
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| 300 | # for now we assume GS3, since that's what the following gets implemented for
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| 301 | my $collect_cfg = &colcfg::read_collection_cfg ($collectcfg, "gs3");
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| 302 | # get the database type for this collection from its configuration file (may be undefined)
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| 303 | my $infodbtype = $collect_cfg->{'infodbtype'} || &dbutil::get_default_infodb_type();
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| 304 |
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| 305 | # open .gdbm database file in building/text/$colname.gdb, using dbutil
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| 306 | my $colname = $gs_col;
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| 307 | $colname =~ s/(:?\\|\/)(.*)$/$1/; # remove any collect group from collection name to get tailname
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| 308 |
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| 309 | my $building_txt_dir = &util::filename_cat ($collectdir, $gs_col, "building", "text");
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| 310 | my $building_txt_db = &dbutil::get_infodb_file_path($infodbtype, "$colname", $building_txt_dir);
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| 311 |
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| 312 | # foreach key that matches http://dir1/dir2/....file.xxx
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| 313 | my $db_keys = {};
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| 314 | &dbutil::read_infodb_keys($infodbtype,$building_txt_db, $db_keys);
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| 315 |
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| 316 | foreach my $key (keys %$db_keys) {
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| 317 | if($key =~ m@^http://@) {
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| 318 |
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| 319 | # get value for the key
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| 320 | my $src_rec_string = &dbutil::read_infodb_entry($infodbtype,$building_txt_db, $key);
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| 321 | my $src_rec = &dbutil::convert_infodb_string_to_hash($src_rec_string);
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| 322 | my $OID_hash_value = $src_rec->{'section'}->[0];
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| 323 | $OID_hash_value = "$pid_namespace:$gs_col-".$OID_hash_value; # convert to fedoraPID
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| 324 |
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| 325 | # its fedora pid = "greenstone-http:$colname-http:||dir|file.xxx"
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| 326 | # except that fedorapids don't like extra colons and don't like |
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| 327 | my $fedora_identifier = "$pid_namespace-http:$gs_col-$key";
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| 328 | # CAN'T HAVE | OR : (as in "http:||one|two.html") in fedoraPID
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| 329 | $key =~ s@/@_@g;
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| 330 | $key =~ s@:@-@g;
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| 331 | my $fedora_pid = "$pid_namespace-http:$gs_col-$key";
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| 332 |
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| 333 | # To run fedora ingest on the new file need to have sensible
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| 334 | # filenames that won't offend windows
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| 335 | my $fedora_key_file_name = "$fedora_pid";
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| 336 | $fedora_key_file_name =~ s@\.@-@g;
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| 337 | $fedora_key_file_name =~ s/\:/=/g;
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| 338 | $fedora_key_file_name .= ".xml";
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| 339 | print STDERR "+++++ fpid: $fedora_pid, fedora-key filename: $fedora_key_file_name\n";
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| 340 |
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| 341 | # write out a FedoraMets File for this key (in /tmp)
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| 342 | # -> it has one metadata value, which is 'dc:title' = HASHxxxxxx
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| 343 |
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| 344 | # The HASHID shouldn't be the title: then will have
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| 345 | # duplicate titles and it will be hard to search for
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| 346 | # unique ones. What about making the filename the
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| 347 | # dc.title and the HASHID the dc.identifier
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| 348 |
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| 349 | my $contents = "<?xml version=\"1.0\" encoding=\"UTF-8\" standalone=\"no\"?>\n";
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| 350 | $contents .= "<mets:mets xmlns:mets=\"http://www.loc.gov/METS/\"\n";
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| 351 | $contents .= " xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\"\n";
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| 352 | $contents .= " xmlns:gsdl3=\"http://www.greenstone.org/namespace/gsdlmetadata/1.0/\"\n";
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| 353 | $contents .= " xmlns:xlink=\"http://www.w3.org/1999/xlink\"\n";
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| 354 | $contents .= " xsi:schemaLocation=\"http://www.loc.gov/METS/\n";
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| 355 | $contents .= " http://www.loc.gov/standards/mets/mets.xsd\n";
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| 356 | $contents .= " http://www.greenstone.org/namespace/gsdlmetadata/1.0/\n";
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| 357 | $contents .= " http://www.greenstone.org/namespace/gsdlmetadata/1.0/gsdl_metadata.xsd\"\n";
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| 358 | $contents .= " OBJID=\"$fedora_pid\"\n";
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| 359 | # $contents .= " OBJID=\"greenstone:$gs_col-HASH1f814d07252c354039ee11\"\n";
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| 360 | $contents .= " TYPE=\"FedoraObject\" LABEL=\"$fedora_pid\" EXT_VERSION=\"1.1\">\n";
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| 361 | $contents .= "<mets:metsHdr RECORDSTATUS=\"A\"/>\n";
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| 362 | $contents .= " <mets:amdSec ID=\"DC\" >\n";
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| 363 | $contents .= " <mets:techMD ID=\"DC.0\">\n";
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| 364 | $contents .= " <mets:mdWrap LABEL=\"Metadata\" MDTYPE=\"OTHER\" OTHERMDTYPE=\"gsdl3\" ID=\"DCgsdl1\">\n";
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| 365 | $contents .= " <mets:xmlData>\n";
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| 366 | $contents .= " <oai_dc:dc xmlns:dc=\"http://purl.org/dc/elements/1.1/\" xmlns:oai_dc=\"http://www.openarchives.org/OAI/2.0/oai_dc/\" >\n";
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| 367 | $contents .= " <dc:title>$OID_hash_value</dc:title>\n";
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| 368 | # $contents .= " <dc:identifier>$fedora_identifier</dc:identifier>\n";
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| 369 | $contents .= " </oai_dc:dc>\n";
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| 370 | $contents .= " </mets:xmlData>\n";
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| 371 | $contents .= " </mets:mdWrap>\n";
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| 372 | $contents .= " </mets:techMD>\n";
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| 373 | $contents .= " </mets:amdSec>\n";
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| 374 | $contents .= "</mets:mets>\n";
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| 375 |
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| 376 |
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| 377 | # write out the file and then run fedora ingest on that file
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| 378 | # The file gets purged in g2f-import.pl, so don't remove it from export dir now
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| 379 | my $fedora_key_file_path = &util::filename_cat($export_dir, $fedora_key_file_name);
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| 380 | unless(open(FOUT, ">$fedora_key_file_path")) {
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| 381 | print STDERR "g2f-buildcol.pl: Unable to open $fedora_key_file_path...ERROR: $!\n";
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| 382 | exit 1;
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| 383 | }
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| 384 | print FOUT $contents;
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| 385 | close(FOUT);
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| 386 |
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| 387 | print STDERR "<Build>\n" if $gli;
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| 388 | print STDERR "Ingesting $fedora_key_file_name\n";
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| 389 | print STDERR "#### ".join(",", %$options)."\n";
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| 390 |
|
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| 391 | &g2futil::run_ingest($fedora_key_file_path,$options);
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| 392 | print STDERR "</Build>\n" if $gli;
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| 393 | }
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| 394 |
|
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| 395 | }
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| 396 |
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| 397 |
|
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| 398 | # If successful!!! Then need to think about:
|
|---|
| 399 | # [CLX] nodes
|
|---|
| 400 | # Doing this with FedoraMETSPlugin
|
|---|
| 401 |
|
|---|
| 402 |
|
|---|
| 403 | # for the Greenstone reader interface to make the new Fedora collection available,
|
|---|
| 404 | # need to write out buildConfig.xml with FedoraServiceProxy as a new ServiceRack element
|
|---|
| 405 | # Kathy thinks it's better to create a buildConfig.xml than put it in collectionConfig.xml
|
|---|
| 406 |
|
|---|
| 407 | my $indexdir = &util::filename_cat ($collectdir, $gs_col, "index");
|
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| 408 | &util::mk_dir($indexdir) unless &util::dir_exists($indexdir);
|
|---|
| 409 |
|
|---|
| 410 | my $buildcfg = &util::filename_cat ($indexdir, "buildConfig.xml");
|
|---|
| 411 | if(-e $buildcfg) {
|
|---|
| 412 | print STDERR "***** $buildcfg already exists for this fedora collection.\n";
|
|---|
| 413 | print STDERR "***** Not modifying it to insert a FedoraServiceProxy ServiceRack.\n";
|
|---|
| 414 | }
|
|---|
| 415 | else { # or do I just have a template buildConfig.xml that I copy over?
|
|---|
| 416 |
|
|---|
| 417 | my $contents = "<buildConfig>\n";
|
|---|
| 418 | $contents .= " <metadataList/>\n";
|
|---|
| 419 | $contents .= " <serviceRackList>\n";
|
|---|
| 420 | $contents .= " <serviceRack name=\"FedoraServiceProxy\" />\n";
|
|---|
| 421 | $contents .= " </serviceRackList>\n";
|
|---|
| 422 | $contents .= "</buildConfig>\n";
|
|---|
| 423 |
|
|---|
| 424 | #print STDERR "**** collectcfg file: $collectcfg\n";
|
|---|
| 425 | unless(open(FOUT, ">$buildcfg")) {
|
|---|
| 426 | print STDERR "g2f-buildcol.pl: Unable to open $collectcfg...ERROR: $!\n";
|
|---|
| 427 | exit 1;
|
|---|
| 428 | }
|
|---|
| 429 | print FOUT $contents;
|
|---|
| 430 | close(FIN);
|
|---|
| 431 | }
|
|---|
| 432 | }
|
|---|
| 433 |
|
|---|
| 434 | &main(@ARGV);
|
|---|
| 435 |
|
|---|
| 436 |
|
|---|
| 437 |
|
|---|
