source: main/trunk/greenstone2/common-src/indexers/lucene-gs/src/org/greenstone/LuceneWrapper4/GS2LuceneQuery.java@ 32507

/**********************************************************************
 *
 * GS2LuceneQuery.java 
 *
 * Copyright 2004 The New Zealand Digital Library Project
 *
 * A component of the Greenstone digital library software
 * from the New Zealand Digital Library Project at the
 * University of Waikato, New Zealand.
 *
 * This program is free software; you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation; either version 2 of the License, or
 * (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 675 Mass Ave, Cambridge, MA 02139, USA.
 *
 *********************************************************************/
package org.greenstone.LuceneWrapper4;


import java.io.*;
import java.util.*;
import java.util.regex.*;

import org.apache.lucene.analysis.Analyzer;
import org.apache.lucene.analysis.standard.StandardAnalyzer;
import org.apache.lucene.document.Document;
import org.apache.lucene.index.DirectoryReader;
import org.apache.lucene.index.IndexReader;
import org.apache.lucene.index.Term;
//import org.apache.lucene.index.TermDocs;
import org.apache.lucene.queryparser.classic.ParseException;
import org.apache.lucene.queryparser.classic.QueryParser;
import org.apache.lucene.search.BooleanClause;
import org.apache.lucene.search.BooleanQuery; // for the TooManyClauses exception
import org.apache.lucene.search.ConstantScoreQuery;
import org.apache.lucene.search.Filter;
import org.apache.lucene.search.IndexSearcher;
import org.apache.lucene.search.MultiTermQuery;
import org.apache.lucene.search.MultiTermQuery.ConstantScoreAutoRewrite;
import org.apache.lucene.search.Query;
import org.apache.lucene.search.TermRangeFilter;
import org.apache.lucene.search.IndexSearcher; // Searcher is deprecated
import org.apache.lucene.search.ScoreDoc;
import org.apache.lucene.search.Sort;
import org.apache.lucene.search.SortField;
import org.apache.lucene.search.TopFieldDocs;

import org.apache.lucene.index.DocsEnum;
import org.apache.lucene.index.MultiFields;

import org.apache.lucene.store.Directory;
import org.apache.lucene.store.FSDirectory;

import org.apache.lucene.util.Bits;
import org.apache.lucene.util.BytesRef;
import org.apache.lucene.util.Version;

public class GS2LuceneQuery extends SharedSoleneQuery
{
  public static String SORT_RANK = "rank";
  public static String SORT_NATURAL = "natural";

    protected String full_indexdir="";

  protected SortField.Type sort_type = SortField.Type.SCORE;
  protected boolean reverse_sort = false;
    protected Sort sorter=new Sort();
    protected Filter filter = null;

    protected QueryParser query_parser = null;
    protected QueryParser query_parser_no_stop_words = null;
    protected IndexSearcher searcher = null;
    protected IndexReader reader = null;

    public GS2LuceneQuery() {
    super();

    // Create one query parser with the standard set of stop words, and one with none

    query_parser = new QueryParser(GSLuceneConstants.MATCH_VERSION, TEXTFIELD, new GS2Analyzer()); // uses built-in stop_words_set
        query_parser_no_stop_words = new QueryParser(GSLuceneConstants.MATCH_VERSION, TEXTFIELD, new GS2Analyzer(new String[] { }));
    }
    
    
    public boolean initialise() {

    if (!super.initialise()) {
        return false;
    }


        if (full_indexdir==null || full_indexdir.length()==-1){
        utf8out.println("Index directory is not indicated ");
        utf8out.flush();
        return false;
        }

        try {
        Directory full_indexdir_dir = FSDirectory.open(new File(full_indexdir));

        reader = DirectoryReader.open(full_indexdir_dir); // Returns a IndexReader reading the index in the given Directory. now readOnly=true by default, and therefore also for searcher
        searcher = new IndexSearcher(reader); // during searcher.search() will get it to compute ranks when sorting by fields
        
        this.sorter = new Sort(new SortField(this.sort_field, this.sort_type, this.reverse_sort));
    }
    catch (IOException exception) {
            exception.printStackTrace();
        return false;
        }
    return true;

    }

    public void setIndexDir(String full_indexdir) {
    this.full_indexdir = full_indexdir;
    }

    public void setSortField(String sort_field) {
      if (sort_field.equals(SORT_RANK)) {
    this.sort_field = null;
    this.sort_type = SortField.Type.SCORE;
      } else if (sort_field.equals(SORT_NATURAL)) {
    this.sort_field = null;
    this.sort_type = SortField.Type.DOC;
      } else {
    this.sort_field  = sort_field;
    this.sort_type = SortField.Type.STRING; // for now. numeric??
      }
    }
  public void setReverseSort(boolean reverse) {
    this.reverse_sort = reverse;
  }
  public boolean getReverseSort() {
    return this.reverse_sort;
  }

    public void setFilterString(String filter_string) {
    super.setFilterString(filter_string);
    this.filter = parseFilterString(filter_string);
    }

    public Filter getFilter() {
    return this.filter;
    }

    
    public LuceneQueryResult runQuery(String query_string) {
    
    if (query_string == null || query_string.equals("")) {
        utf8out.println("The query word is not indicated ");
        utf8out.flush();
        return null;
    }

    LuceneQueryResult lucene_query_result=new LuceneQueryResult();
    lucene_query_result.clear();
        
    try {               
        Query query_including_stop_words = query_parser_no_stop_words.parse(query_string);
        query_including_stop_words = query_including_stop_words.rewrite(reader);
        
        // System.err.println("********* query_string " + query_string + "****");

        Query query = parseQuery(reader, query_parser, query_string, fuzziness);
        query = recursiveRewriteQuery(query, reader);       
        // System.err.println("@@@@ final query class name: " + query.getClass());

        // http://stackoverflow.com/questions/13537126/term-frequency-in-lucene-4-0
        // http://stackoverflow.com/questions/20575254/lucene-4-4-how-to-get-term-frequency-over-all-index
        // http://stackoverflow.com/questions/8938960/how-to-get-document-ids-for-document-term-vector-in-lucene?rq=1
        // https://github.com/hibernate/hibernate-search/blob/master/orm/src/test/java/org/hibernate/search/test/filter/BestDriversFilter.java
        // http://lucene.apache.org/core/4_7_2/MIGRATE.html

        // Get the list of expanded query terms and their frequencies 
        // num docs matching, and total frequency       
        HashSet terms = new HashSet();
        query.extractTerms(terms);

        HashMap doc_term_freq_map = new HashMap();
        
        Iterator iter = terms.iterator();
        
        Bits liveDocs = null;
        if(reader.hasDeletions()) {
        System.err.println("@@@ GS2LuceneQuery.java: There have been deletions. Merging to get liveDocs.");
        liveDocs = MultiFields.getLiveDocs(reader); // SLOW! But getLiveDocs returns null if there are no deletions
        }

        while (iter.hasNext()) {

        // http://stackoverflow.com/questions/13537126/term-frequency-in-lucene-4-0
            
        Term term = (Term) iter.next();
        // System.err.println("@@@ GS2LuceneQuery.java: Next term: " + term.text());
        BytesRef term_bytes = term.bytes();
        DocsEnum term_docs = MultiFields.getTermDocsEnum(reader, liveDocs, term.field(), term_bytes); // flags?

        // Get the term frequency over all the documents
        //TermDocs term_docs = reader.termDocs(term);
        int term_freq = 0;
        int match_docs = 0;

        if(term_docs != null) {
            int docID = -1;
            while((docID = term_docs.nextDoc()) != DocsEnum.NO_MORE_DOCS) {//while (term_docs.next())   
            if (term_docs.freq() != 0)
                {
                term_freq += term_docs.freq();
                match_docs++;
                
                // Calculate the document-level term frequency as well
                Integer lucene_doc_num_obj = new Integer(term_docs.docID());
                int doc_term_freq = 0;
                if (doc_term_freq_map.containsKey(lucene_doc_num_obj))
                    {
                    doc_term_freq = ((Integer) doc_term_freq_map.get(lucene_doc_num_obj)).intValue();
                    }
                doc_term_freq += term_docs.freq();
                
                doc_term_freq_map.put(lucene_doc_num_obj, new Integer(doc_term_freq));
                }
            }
        } else {
            System.err.println("@@@ GS2LuceneQuery.java: term_docs is null for term " + term.text());
        }

        // Create a term 
        lucene_query_result.addTerm(term.text(), term.field(), match_docs, term_freq);
        }
    
        // Get the list of stop words removed from the query
        HashSet terms_including_stop_words = new HashSet();
        query_including_stop_words.extractTerms(terms_including_stop_words);
        Iterator terms_including_stop_words_iter = terms_including_stop_words.iterator();
        while (terms_including_stop_words_iter.hasNext()) {
        Term term = (Term) terms_including_stop_words_iter.next();
        if (!terms.contains(term)) {
            lucene_query_result.addStopWord(term.text());
        }
        }
        
        // Extracting all documents for a given search - http://www.gossamer-threads.com/lists/lucene/java-user/134873
        // http://lucene.apache.org/core/3_4_0/api/core/org/apache/lucene/search/TotalHitCountCollector.html
        // http://lucene.apache.org/core/4_7_2/core/index.html?org/apache/lucene/search/TopFieldDocs.html

        // 1. Figure out how many results there will be.
        //TotalHitCountCollecter countCollector = new TotalHitCountCollector();
        //searcher.search(query, filter, collector);
        //int hitCount = collector.count;

        // Actually do the query
        // Simple case for getting all the matching documents
        if (end_results == Integer.MAX_VALUE) {
        // Perform the query (filter and sorter may be null)
        TopFieldDocs hits = searcher.search(query, filter, end_results, sorter, true, true); // doDocScores=true, doMaxScore=true
             // Is there a slight difference in the definition between
             // https://lucene.apache.org/core/3_6_0/api/all/org/apache/lucene/search/IndexSearcher.html#setDefaultFieldSortScoring%28boolean,%20boolean%29
             // and http://lucene.apache.org/core/4_7_2/core/org/apache/lucene/search/IndexSearcher.html#search%28org.apache.lucene.search.Query,%20org.apache.lucene.search.Filter,%20int,%20org.apache.lucene.search.Sort,%20boolean,%20boolean%29
             // Seems to be okay.
             // See also http://stackoverflow.com/questions/7910241/in-lucene-what-is-the-purpose-of-setdefaultfieldsortscoring

        lucene_query_result.setTotalDocs(hits.totalHits);

        // Output the matching documents
        lucene_query_result.setStartResults(start_results);
        lucene_query_result.setEndResults(hits.totalHits); // ??

        for (int i = start_results; i < hits.totalHits; i++) {
          int lucene_doc_num = hits.scoreDocs[i ].doc; // i-1
            Document doc = reader.document(lucene_doc_num);
            int doc_term_freq = 0;
            Integer doc_term_freq_object = (Integer) doc_term_freq_map.get(new Integer(lucene_doc_num));
            if (doc_term_freq_object != null)
            {
            doc_term_freq = doc_term_freq_object.intValue();
            }
            lucene_query_result.addDoc(doc.get("docOID").trim(), hits.scoreDocs[i].score, doc_term_freq);
        }
        }

        // Slightly more complicated case for returning a subset of the matching documents
        else {
        // Perform the query (filter may be null)
        TopFieldDocs hits = searcher.search(query, filter, end_results, sorter, true, true); // doDocScores=true, doMaxScore=true
               // See also http://stackoverflow.com/questions/7910241/in-lucene-what-is-the-purpose-of-setdefaultfieldsortscoring
        lucene_query_result.setTotalDocs(hits.totalHits);
        
        lucene_query_result.setStartResults(start_results);
        lucene_query_result.setEndResults(end_results < hits.scoreDocs.length ? end_results: hits.scoreDocs.length);

        // Output the matching documents
        for (int i = start_results; (i < hits.scoreDocs.length && i < end_results); i++) {
            int lucene_doc_num = hits.scoreDocs[i].doc;
            Document doc = reader.document(lucene_doc_num);
            int doc_term_freq = 0;
            Integer doc_term_freq_object = (Integer) doc_term_freq_map.get(new Integer(lucene_doc_num));
            if (doc_term_freq_object != null)
            {
            doc_term_freq = doc_term_freq_object.intValue();
            }
            lucene_query_result.addDoc(doc.get("docOID").trim(), hits.scoreDocs[i].score, doc_term_freq);
        }
        }
    }
    
    catch (ParseException parse_exception) {
        lucene_query_result.setError(LuceneQueryResult.PARSE_ERROR);
    }
    catch (BooleanQuery.TooManyClauses too_many_clauses_exception) {
        lucene_query_result.setError(LuceneQueryResult.TOO_MANY_CLAUSES_ERROR);
    }
    catch (IOException exception) {
        lucene_query_result.setError(LuceneQueryResult.IO_ERROR);
        exception.printStackTrace();
    }
    catch (Exception exception) {
        lucene_query_result.setError(LuceneQueryResult.OTHER_ERROR);
        exception.printStackTrace();
    }
    return lucene_query_result;
    }

    public void setDefaultConjunctionOperator(String default_conjunction_operator) {
    super.setDefaultConjunctionOperator(default_conjunction_operator);

    if (default_conjunction_operator.equals("AND")) {
        query_parser.setDefaultOperator(query_parser.AND_OPERATOR);
        query_parser_no_stop_words.setDefaultOperator(query_parser.AND_OPERATOR);
    } else { // default is OR
        query_parser.setDefaultOperator(query_parser.OR_OPERATOR);
        query_parser_no_stop_words.setDefaultOperator(query_parser.OR_OPERATOR);
    }
    }
     
       
    public void cleanUp() {
    super.cleanUp();
    try {
        if(reader != null) {
        reader.close();
        // Closes files associated with this index. Also saves any new deletions to disk. 
        // No other methods should be called after this has been called. 
        }
    } catch (IOException exception) {
        exception.printStackTrace();
    }
    }


    protected Query parseQuery(IndexReader reader, QueryParser query_parser, String query_string, String fuzziness)
    throws java.io.IOException, org.apache.lucene.queryparser.classic.ParseException
    {
    // Split query string into the search terms and the filter terms
    // * The first +(...) term contains the search terms so count
    //   up '(' and stop when we finish matching ')'
    int offset = 0;
    int paren_count = 0;
    boolean seen_paren = false;
    while (offset < query_string.length() && (!seen_paren || paren_count > 0)) {
        if (query_string.charAt(offset) == '(') {
        paren_count++;
        seen_paren = true;
        }
        if (query_string.charAt(offset) == ')') {
        paren_count--;
        }
        offset++;
    }
    String query_prefix = query_string.substring(0, offset);
    String query_suffix = query_string.substring(offset);
    
    ///ystem.err.println("Prefix: " + query_prefix);
    ///ystem.err.println("Suffix: " + query_suffix);
    
    Query query = query_parser.parse(query_prefix);
    query = query.rewrite(reader);
    
    // If this is a fuzzy search, then we need to add the fuzzy
    // flag to each of the query terms
    if (fuzziness != null && query.toString().length() > 0) {
        
        // Revert the query to a string
        System.err.println("Rewritten query: " + query.toString());
        // Search through the string for TX:<term> query terms
        // and append the ~ operator. Note that this search will
        // not change phrase searches (TX:"<term> <term>") as
        // fuzzy searching is not possible for these entries.
        // Yahoo! Time for a state machine!
        StringBuffer mutable_query_string = new StringBuffer(query.toString());
        int o = 0; // Offset
        // 0 = BASE, 1 = SEEN_T, 2 = SEEN_TX, 3 = SEEN_TX:
        int s = 0; // State
        while(o < mutable_query_string.length()) {
        char c = mutable_query_string.charAt(o);
        if (s == 0 && c == TEXTFIELD.charAt(0)) {
            ///ystem.err.println("Found T!");
            s = 1;
        }
        else if (s == 1) {
            if (c == TEXTFIELD.charAt(1)) {
            ///ystem.err.println("Found X!");
            s = 2;
            }
            else {
            s = 0; // Reset
            }
        }
        else if (s == 2) {
            if (c == ':') {
            ///ystem.err.println("Found TX:!");
            s = 3;
            }
            else {
            s = 0; // Reset
            }
        }
        else if (s == 3) {
            // Don't process phrases
            if (c == '"') {
            ///ystem.err.println("Stupid phrase...");
            s = 0; // Reset
            }
            // Found the end of the term... add the
            // fuzzy search indicator
            // Nor outside the scope of parentheses
            else if (Character.isWhitespace(c) || c == ')') {
            ///ystem.err.println("Yahoo! Found fuzzy term.");
            mutable_query_string.insert(o, '~' + fuzziness);
            o++;
            s = 0; // Reset
            }
        }
        o++;
        }
        // If we were in the state of looking for the end of a
        // term - then we just found it!
        if (s == 3) {
            
        mutable_query_string.append('~' + fuzziness);
        }
        // Reparse the query
        ///ystem.err.println("Fuzzy query: " + mutable_query_string.toString() + query_suffix);
        query = query_parser.parse(mutable_query_string.toString() + query_suffix);
    }
    else {
        query = query_parser.parse(query_prefix + query_suffix);
    }
    
    return query;
    }

    // If you're dealing with a BooleanQuery, they need to be recursively rewritten
    // as they can contain queries with wildcards (WildcardQuery|PrefixQuery subclasses of MultiTermQuery)
    // e.g. season* farm
    // If MultiTermQuery, then expand here. e.g. WildcardQuerys like season*.
    // DON'T call this method from inside parseQuery() (in place of its query.rewrite()), because then wildcard
    // queries like season* won't contain Terms (extractTerms() will be empty) since the ConstantScoreQuerys
    // that a WildcardQuery gets rewritten to here will contain Filters in place of Terms.
    // Call this method from runQuery() after it calls parseQuery().
    // Now searches like these will work
    //    season* farm
    //    season* farm*
    // and not just searches like the following which already used to work:
    //    season*
    //    snail farm
    // Idea for this method came from inspecting source code to BooleanQuery
    // https://github.com/apache/lucene-solr/blob/master/lucene/core/src/java/org/apache/lucene/search/BooleanQuery.java
    // which also does a recursive rewrite. Unfortunately, the existing BooleanQuery does not handle MultiTermQuery
    // subcomponents.
    protected Query recursiveRewriteQuery(Query orig_query, IndexReader reader) throws java.io.IOException
    {
    //Query query = orig_query.rewrite(reader);
    Query query = orig_query;

    if(orig_query instanceof BooleanQuery) {
        BooleanQuery booleanQuery = (BooleanQuery)orig_query;
        List<BooleanClause> clauses = booleanQuery.clauses(); 
        for (BooleanClause clause : clauses) {
        Query subQuery = clause.getQuery();
        subQuery = recursiveRewriteQuery(subQuery, reader);
        clause.setQuery(subQuery);
        }
    }
    
    // GS2's LuceneWrapper uses lucene-2.3.2. GS3's LuceneWrapper3 works with lucene-3.3.0. 
        // This change in lucene core library for GS3 (present since after version 2.4.1) had the
        // side-effect that searching on "econom*" didn't display what terms it was searching for, 
        // whereas it had done so in GS2. 

        // The details of this problem and its current solution are explained in the ticket 
        // http://trac.greenstone.org/ticket/845

        // We need to change the settings for the rewriteMethod in order to get searches on wildcards
        // to produce search terms again when the query gets rewritten.

        // We try, in order:
        // 1. RewriteMethod set to BooleanQuery, to get it working as in GS2 which uses lucene-2.3.2
        // it will expand wildcard searches to its terms when searching at both section AND doc level.
        // If that throws a TooManyClauses exception (like when searching for "a*" over lucene demo collection)
        // 2. Then try a custom rewriteMethod which sets termCountCutoff=350 and docCountPercent cutoff=0.1%
        // If that throws a TooManyClauses exception (could perhaps happen if the collection has a huge number of docs
        // 3. Then try the default apache rewriteMethod with its optimum defaults of 
        // termCountCutoff=350 and docCountPercent cutoff=0.1%
        //  See http://lucene.apache.org/core/3_6_1/api/core/org/apache/lucene/search/MultiTermQuery.html

        //System.err.println("@@@@ query class name: " + orig_query.getClass());
        //System.err.println("@@@@ QUERY: " + orig_query);

        if(orig_query instanceof MultiTermQuery) {
        MultiTermQuery multiTermQuery = (MultiTermQuery)orig_query;
        multiTermQuery.setRewriteMethod(MultiTermQuery.CONSTANT_SCORE_BOOLEAN_QUERY_REWRITE);
             // less CPU intensive than MultiTermQuery.SCORING_BOOLEAN_QUERY_REWRITE)
        }

        try {
        query = orig_query.rewrite(reader);
        } 
        catch(BooleanQuery.TooManyClauses clauseException) {
        // Example test case: try searching the lucene demo collection for "a*" 
        // and you'll hit this exception

        //lucene_query_result.setError(LuceneQueryResult.TOO_MANY_CLAUSES_ERROR);

        if(query instanceof MultiTermQuery) {

            // CustomRewriteMethod: setting the docCountPercent cutoff to a custom 100%. 
            // This will at least expand the query to its terms when searching with wildcards at section-level 
            // (though it doesn't seem to work for doc-level searches, no matter what the cutoffs are set to).

            MultiTermQuery.ConstantScoreAutoRewrite customRewriteMethod = new MultiTermQuery.ConstantScoreAutoRewrite();
            customRewriteMethod.setDocCountPercent(100.0);
            customRewriteMethod.setTermCountCutoff(350); // same as default
            
            MultiTermQuery multiTermQuery = (MultiTermQuery)query;
            multiTermQuery.setRewriteMethod(customRewriteMethod);
            try {
            query = query.rewrite(reader);
            } 
            catch(BooleanQuery.TooManyClauses clauseExceptionAgain) {

            // do what the code originally did: use the default rewriteMethod which
            // uses a default docCountPercent=0.1 (%) and termCountCutoff=350

            multiTermQuery.setRewriteMethod(MultiTermQuery.CONSTANT_SCORE_AUTO_REWRITE_DEFAULT);
            query = query.rewrite(reader);
            }
        }
        }

        if(orig_query == query) {
        return query;
        } else {
        return recursiveRewriteQuery(query, reader);
        }
    }

    protected Filter parseFilterString(String filter_string)
    {
    Filter result = null;
    Pattern pattern = Pattern.compile("\\s*\\+(\\w+)\\:([\\{\\[])(\\d+)\\s+TO\\s+(\\d+)([\\}\\]])\\s*");
    Matcher matcher = pattern.matcher(filter_string);
    if (matcher.matches()) {
        String field_name = matcher.group(1);
        boolean include_lower = matcher.group(2).equals("[");
        BytesRef lower_term = new BytesRef(matcher.group(3));
        BytesRef upper_term = new BytesRef(matcher.group(4));
        boolean include_upper = matcher.group(5).equals("]");
        result = new TermRangeFilter(field_name, lower_term, upper_term, include_lower, include_upper);
    }
    else {
        System.err.println("Error: Could not understand filter string \"" + filter_string + "\"");
    }
    return result;
    }
    

    /** command line program and auxiliary methods */

    // Fairly self-explanatory I should hope
    static protected boolean query_result_caching_enabled = false;


    static public void main (String args[])
    {
    if (args.length == 0) {
        System.out.println("Usage: GS2LuceneQuery <index directory> [-fuzziness value] [-filter filter_string] [-sort sort_field] [-reverse_sort][-dco AND|OR] [-startresults number -endresults number] [query]");
        return;
    }

    try {
        String index_directory = args[0];
        
        GS2LuceneQuery queryer = new GS2LuceneQuery();
        queryer.setIndexDir(index_directory);

        // Prepare the index cache directory, if query result caching is enabled
        if (query_result_caching_enabled) {
        // Make the index cache directory if it doesn't already exist
        File index_cache_directory = new File(index_directory, "cache");
        if (!index_cache_directory.exists()) {
            index_cache_directory.mkdir();
        }

        // Disable caching if the index cache directory isn't available
        if (!index_cache_directory.exists() || !index_cache_directory.isDirectory()) {
            query_result_caching_enabled = false;
        }
        }

        String query_string = null;

        // Parse the command-line arguments
            for (int i = 1; i < args.length; i++) {
        if (args[i].equals("-sort")) {
            i++;
            queryer.setSortField(args[i]);
        }
        else if (args[i].equals("-reverse_sort")) {
          queryer.setReverseSort(true);
        }
        else if (args[i].equals("-filter")) {
            i++;
            queryer.setFilterString(args[i]);
        }
        else if (args[i].equals("-dco")) {
            i++;
            queryer.setDefaultConjunctionOperator(args[i]);
        }
        else if (args[i].equals("-fuzziness")) {
            i++;
            queryer.setFuzziness(args[i]);
        }
        else if (args[i].equals("-startresults")) {
            i++;
            if (args[i].matches("\\d+")) {
            queryer.setStartResults(Integer.parseInt(args[i]));
            }
        }
        else if (args[i].equals("-endresults")) {
            i++;
            if (args[i].matches("\\d+")) {
            queryer.setEndResults(Integer.parseInt(args[i]));
            }
        }
        else {
            query_string = args[i];
        }
        }
        
        if (!queryer.initialise()) {
        return;
        }
        
        // The query string has been specified as a command-line argument
        if (query_string != null) {
        runQueryCaching(index_directory, queryer, query_string);
        }

        // Read queries from STDIN
        else {
        BufferedReader in = new BufferedReader(new InputStreamReader(System.in, "UTF-8"));
        while (true) {
            // Read the query from STDIN
            query_string = in.readLine();
            if (query_string == null || query_string.length() == -1) {
            break;
            }

            runQueryCaching(index_directory, queryer, query_string);
            
        }
        }
        queryer.cleanUp();
    }
    catch (IOException exception) {
        exception.printStackTrace();
    }
    }

    protected static void runQueryCaching(String index_directory, GS2LuceneQuery queryer, String query_string) 
    throws IOException
    {
    StringBuffer query_results_xml = new StringBuffer();

    // Check if this query result has been cached from a previous search (if it's enabled)
    File query_result_cache_file = null;
    if (query_result_caching_enabled) {
        // Generate the cache file name from the query options
        String query_result_cache_file_name = query_string + "-";
        String fuzziness = queryer.getFuzziness();
        query_result_cache_file_name += ((fuzziness != null) ? fuzziness : "") + "-";
        String filter_string = queryer.getFilterString();
        query_result_cache_file_name += ((filter_string != null) ? filter_string : "") + "-";
        String sort_string = queryer.getSortField();
        query_result_cache_file_name += ((sort_string != null) ? sort_string : "") + "-";
        String reverse_sort_string = (queryer.getReverseSort() ? "1" : "0");
        query_result_cache_file_name += reverse_sort_string + "-";
        String default_conjunction_operator = queryer.getDefaultConjunctionOperator();
        query_result_cache_file_name += default_conjunction_operator + "-";
        int start_results = queryer.getStartResults();
        int end_results = queryer.getEndResults();
        query_result_cache_file_name += start_results + "-" + end_results;
        query_result_cache_file_name = fileSafe(query_result_cache_file_name);

        // If the query result cache file exists, just return its contents and we're done
        File index_cache_directory = new File(index_directory, "cache");
        query_result_cache_file = new File(index_cache_directory, query_result_cache_file_name);
        if (query_result_cache_file.exists() && query_result_cache_file.isFile()) {
        FileInputStream fis = new FileInputStream(query_result_cache_file);
        InputStreamReader isr = new InputStreamReader(fis, "UTF-8");
        BufferedReader buffered_reader = new BufferedReader(isr);
        String line = "";
        while ((line = buffered_reader.readLine()) != null) {
            query_results_xml.append(line + "\n");
        }
        String query_results_xml_string = query_results_xml.toString();
        query_results_xml_string = query_results_xml_string.replaceFirst("cached=\"false\"", "cached=\"true\"");

        utf8out.print(query_results_xml_string);
        utf8out.flush();

        return;
        }
    }
    
    // not cached
    query_results_xml.append("<ResultSet cached=\"false\">\n");
    query_results_xml.append("<QueryString>" + LuceneQueryResult.xmlSafe(query_string) + "</QueryString>\n");
    Filter filter = queryer.getFilter();
    if (filter != null) {
        query_results_xml.append("<FilterString>" + filter.toString() + "</FilterString>\n");
    }
    
    LuceneQueryResult query_result = queryer.runQuery(query_string);
    if (query_result == null) {
        System.err.println("Couldn't run the query");
        return;
    }
    
    if (query_result.getError() != LuceneQueryResult.NO_ERROR) {
        query_results_xml.append("<Error type=\""+query_result.getErrorString()+"\" />\n");
    } else {
        query_results_xml.append(query_result.getXMLString());
    }
    query_results_xml.append("</ResultSet>\n");

    utf8out.print(query_results_xml);
    utf8out.flush();

    // Cache this query result, if desired
    if (query_result_caching_enabled) {
        // Catch any exceptions thrown trying to write the query result cache file and warn about them, but don't
        //   bother with the full stack trace. It won't affect the functionality if we can't write some cache
        //   files, it will just affect the speed of subsequent requests.
        // Example exceptions are "permission denied" errors, or "filename too long" errors (the filter string
        //   can get very long in some collections)
        try
        {
        FileWriter query_result_cache_file_writer = new FileWriter(query_result_cache_file);
        query_result_cache_file_writer.write(query_results_xml.toString());
        query_result_cache_file_writer.close();
        }
        catch (Exception exception)
        {
        System.err.println("Warning: Exception occurred trying to write query result cache file (" + exception + ")");
        }
    }
    }
    
    protected static String fileSafe(String text)
    {
    StringBuffer file_safe_text = new StringBuffer();
    for (int i = 0; i < text.length(); i++) {
        char character = text.charAt(i);
        if ((character >= 'A' && character <= 'Z') || (character >= 'a' && character <= 'z') || (character >= '0' && character <= '9') || character == '-') {
        file_safe_text.append(character);
        }
        else {
        file_safe_text.append('%');
        file_safe_text.append((int) character);
        }
    }
    return file_safe_text.toString();
    }

    
}