1 | package org.greenstone.mars;
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2 |
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3 | //import java.util.Random;
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4 |
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5 | import java.io.BufferedInputStream;
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6 | import java.io.FileInputStream;
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7 |
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8 | import java.io.BufferedReader;
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9 | import java.io.BufferedWriter;
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10 | import java.io.FileReader;
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11 | import java.io.FileWriter;
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12 |
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13 | import weka.core.converters.ConverterUtils.DataSource;
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14 | import weka.core.Attribute;
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15 | import weka.core.Instance;
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16 | import weka.core.Instances;
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17 | import weka.core.SerializationHelper;
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18 |
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19 | import weka.filters.Filter;
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20 | import weka.filters.unsupervised.attribute.Remove;
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21 |
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22 | import weka.classifiers.Classifier;
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23 |
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24 |
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25 | // Based on:
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26 | // https://waikato.github.io/weka-wiki/use_weka_in_your_java_code/
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27 |
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28 | class WekaApplyArousalModel
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29 | {
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30 |
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31 | //public final static String PREDICT_ATTRIBUTE_NAME = WekaUtil.AROUSAL_ATTRIBUTE_NAME;
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32 |
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33 |
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34 |
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35 | public static void main(String[] args)
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36 | {
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37 | /*
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38 | if (args.length != 3) {
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39 | System.err.println("Error: incorrect number of command-line arguments");
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40 | System.err.println("Usage: trained-model.{model|ser} unclassified-data.{arff|csv} classified-data.{arff|csv}");
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41 | System.exit(1);
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42 | }
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43 | */
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44 |
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45 | WekaUtil.checkUsageApplyModel(args);
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46 |
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47 | String classifier_input_filename = args[0];
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48 | String unclassified_data_input_filename = args[1];
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49 | String classified_data_output_filename = args[2];
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50 |
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51 |
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52 | Classifier classifier = WekaUtil.loadClassifierModel(classifier_input_filename);
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53 |
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54 | /*
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55 | System.out.println("Loading Weka saved Classifier: " + classifier_input_filename);
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56 |
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57 | try {
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58 | FileInputStream fis = new FileInputStream(classifier_input_filename);
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59 | BufferedInputStream bis= new BufferedInputStream(fis);
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60 | Classifier classifier = (Classifier)SerializationHelper.read(bis);
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61 |
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62 | //
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63 | // Load in unlabeled data
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64 | //
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65 |
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66 | System.out.println("Loading unlabeled instances: " + unclassified_data_input_filename);
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67 |
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68 | DataSource data_source = new DataSource(unclassified_data_input_filename);
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69 | Instances unlabeled_instances = data_source.getDataSet();
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70 |
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71 | // Work out if we're dealing with a ground-truth ARFF file or not
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72 | // (i.e. already has the desired attribute)
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73 |
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74 | Instances groundtruth_instances = null;
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75 | Attribute predict_attribute = unlabeled_instances.attribute(PREDICT_ATTRIBUTE_NAME);
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76 |
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77 | if (predict_attribute == null) {
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78 |
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79 | unlabeled_instances = WekaUtil.applyFilter(unlabeled_instances,null); // no additional top-up to remove
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80 | int num_attributes = unlabeled_instances.numAttributes();
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81 |
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82 | Attribute arousal_attribute = new Attribute(WekaUtil.AROUSAL_ATTRIBUTE_NAME);
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83 | unlabeled_instances.insertAttributeAt(arousal_attribute,num_attributes);
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84 | num_attributes++;
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85 | }
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86 | else {
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87 | // Dealing with ground-truth data:
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88 | // => already has 'arousal' attribute
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89 | // => in fact has 'valence' attribute too, which we want to remove
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90 |
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91 | unlabeled_instances = WekaUtil.applyFilter(unlabeled_instances,"472"); // top-up with removal of 'valence'
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92 |
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93 | // reference share this as 'groundtruth_instances' to trigger error calculation and output
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94 | groundtruth_instances = unlabeled_instances;
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95 | }
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96 |
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97 | int num_attributes = unlabeled_instances.numAttributes();
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98 |
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99 | // Set class attribute
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100 | unlabeled_instances.setClassIndex(num_attributes - 1);
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101 |
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102 | WekaUtil.checkDatasetInstancesCompatible(unlabeled_instances);
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103 |
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104 |
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105 |
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106 |
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107 |
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108 | // Create copy where the predictions are to be made
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109 | Instances labeled_instances = new Instances(unlabeled_instances);
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110 |
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111 | //
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112 | // Label instances
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113 | //
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114 |
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115 | final int num_instances = unlabeled_instances.numInstances();
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116 | for (int i=0; i<num_instances; i++) {
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117 | Instance unlabeled_instance = unlabeled_instances.instance(i);
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118 |
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119 | System.out.print("Making prediction for: " + i + "/" + num_instances);
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120 | double classified_value = classifier.classifyInstance(unlabeled_instance);
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121 | labeled_instances.instance(i).setClassValue(classified_value);
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122 |
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123 | String formatted_classified_value = String.format("% 06.3f", classified_value);
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124 |
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125 | System.out.print(" value = " + formatted_classified_value);
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126 |
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127 | if (groundtruth_instances != null) {
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128 | Instance gt_instance = groundtruth_instances.instance(i);
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129 | double gt_class_value = gt_instance.classValue();
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130 | double error = Math.abs(classified_value - gt_class_value);
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131 |
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132 | String formatted_error = String.format("%.3f", error);
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133 | System.out.print(" [error: " + formatted_error + "]");
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134 | }
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135 | System.out.println();
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136 | }
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137 |
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138 | //
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139 | // Save labeled data
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140 | //
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141 |
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142 | System.out.println("Saving labeled instances: " + classified_data_output_filename);
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143 | FileWriter fw = new FileWriter(classified_data_output_filename);
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144 | BufferedWriter bw = new BufferedWriter(fw);
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145 |
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146 | bw.write(labeled_instances.toString());
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147 | bw.newLine();
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148 | bw.flush();
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149 | bw.close();
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150 |
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151 | }
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152 | catch (Exception e) {
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153 | e.printStackTrace();
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154 | }
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155 |
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156 | */
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157 |
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158 |
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159 | Instances unlabeled_instances= WekaUtil.loadInstancesForClassification(unclassified_data_input_filename);
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160 |
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161 | // It is permissible to run this code and supply it with a data file that includes groundtruth in it.
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162 | // In this situation, the 'unlabeled' instances:
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163 | // (i) need to be massaged to be in the same form as truly unlabeled data
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164 | // (ii) we also set up 'groundtruth_instances' as an alias (reference) to 'filtered_unlabeled_instanced'
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165 | // to trigger calculating the error on the predicted vaues
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166 |
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167 | boolean has_groundtruth_data = WekaUtil.instancesHavePredictAttribute(unlabeled_instances,WekaUtil.AROUSAL_ATTRIBUTE_NAME);
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168 |
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169 | // The following deals with (i) internally, ensuring that what is returned is suitable for making predictions on
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170 | Instances filtered_unlabeled_instances
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171 | = WekaUtil.filterInstancesForApplying(unlabeled_instances,has_groundtruth_data,
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172 | WekaUtil.AROUSAL_ATTRIBUTE_NAME,"472");
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173 |
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174 | // The following deals with (ii)
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175 | Instances groundtruth_instances = (has_groundtruth_data) ? filtered_unlabeled_instances : null;
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176 |
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177 | Instances labeled_instances = WekaUtil.makePredictions(classifier, filtered_unlabeled_instances, groundtruth_instances);
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178 |
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179 | try {
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180 | // Save labeled data
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181 |
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182 | System.out.println("Saving labeled instances: " + classified_data_output_filename);
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183 | FileWriter fw = new FileWriter(classified_data_output_filename);
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184 | BufferedWriter bw = new BufferedWriter(fw);
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185 |
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186 | bw.write(labeled_instances.toString());
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187 | bw.newLine();
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188 | bw.flush();
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189 | bw.close();
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190 |
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191 | }
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192 | catch (Exception e) {
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193 | e.printStackTrace();
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194 | }
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195 |
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196 | }
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197 | }
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