function newQuery(containerID, GraphType,hardLimit){
		var Q = new sgvizler.Query();
		Q.query(generateQuery(hardLimit))
			.endpointURL(sparqlEndpoint)
			.endpointOutputFormat("json")
			.chartFunction($('#sel_ChartType').val())
			.draw(containerID);
}

//Checks if all query refinements were entered
function isRefinedQuery(){
        if($('#cb_RefineSearch').is(':checked'))
            return true;
        else
            return false;
}

function generateQuery(hardLimit){
     var predicateURL = $('#sel_Predicate').val();
     var sparqlQuery = "";

	 //Fix to make queries work when object starts with a '<' or '>'
	 var speechMarks = "\"";
	 if($('#sel_RefineObject').val().substring(0,1)=="<") 
		speechMarks="";
    
	//Refine to specific graph if chosen
    var refineDataset = "GRAPH gsdl:" + collectionName + " {\n";
	var select;
	var extra = "";
	var group;

	//Depending on what type of graph, adjust query
	if($('#sel_ChartType').val()=="google.visualization.ImageSparkLine"){
		select = "SELECT ?a WHERE{";
		extra = 'BIND (REPLACE(?o, "\\\\D", "") as ?trim)' +
				"BIND (xsd:integer(SUBSTR(?trim,1,4)) as ?a)" + 
				"FILTER (bound(?a))" +
				"FILTER (?a > 300)" +
				"FILTER (?a < 2015)" ;

		group =  "GROUP BY ?a order by ?a\n";
	}
	else if ($('#sel_ChartType').val()=="google.visualization.LineChart"){
		select = "SELECT ?a (COUNT(?a) as ?count) WHERE{";
		extra = 'BIND (REPLACE(?o, "\\\\D", "") as ?trim)' +
				"BIND (xsd:integer(SUBSTR(?trim,1,4)) as ?a)" + 
				"FILTER (bound(?a))"+
				"FILTER (?a > 300)" +
				"FILTER (?a < 2015)" ;
		group =  "GROUP BY ?a order by ?a\n";
	}
	else{
		select = "SELECT (?o as ?Objects) (COUNT (?o) as ?Count) WHERE {\n" ;
		group =  "GROUP BY ?o ORDER BY DESC(?Count)\n";
	}

    sparqlQuery = "PREFIX gsdl: <http://localhost:3030/greenstone/data/> \n";
    sparqlQuery += "PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>\n";
	  
    if(isRefinedQuery())
       sparqlQuery += select +
                     "  " + refineDataset +
                     "    ?s <"+ predicateURL + "> "+ speechMarks + $('#sel_RefineObject').val() + speechMarks +";\n" +
                     "      <"+$('#sel_RefinePredicate').val() +"> ?o\n"
					 + extra +
					 "}\n" ;
    else
       sparqlQuery += select +
                     "  " + refineDataset +
                     "    ?s <" + predicateURL + "> ?o\n  "  
					 + extra + 
					 "}\n";
        
	//add extra curly brace for end of GRAPH block
    sparqlQuery+= "}\n";

    sparqlQuery +=  group;

    //If a limit was selected, apply it
    if($('#sel_Limit').val()!="None")
        sparqlQuery += " LIMIT " + $('#sel_Limit').val();
	else
        sparqlQuery += " LIMIT " + hardLimit;
		

	var query = sparqlQuery;
	query = query.replace(/</g, '&lt;');
	query = query.replace(/>/g, '&gt;');
	query = query.replace(/\n/g, '<br/>');

    $('#span_sparqlQuery').empty() ;
    $('#span_sparqlQuery').html(query);
    return sparqlQuery;
}

//Updates possiblel values for predicate selector
function updatePredicateSelector(){
    var ajaxSparqlQuery = sparqlEndpoint + "?query=" + encodeURIComponent(overviewSparqlQuery);
        $.ajax({
            url: ajaxSparqlQuery,
            type:"GET",
            data:"output=json",
        })
        .done(function( json ) {
            var parsedJSON = ((typeof json) == "string") ? $.parseJSON(json) : json;
            $.each(parsedJSON.results.bindings,function(index,item){
                var pred  = item.Predicate.value;
                var name = tidyPredicate(pred);
                $('#sel_Predicate')
                    .append("<option value=\""+pred+"\">" + name + "</option>");
                $('#sel_RefinePredicate')
                    .append("<option value=\""+pred+"\">" + name + "</option>");
            });
        });
}

//Fill in possible values for predicate
function updateRefineObjectSelector(predicate){
     var refineDataset = "GRAPH gsdl:" + collectionName + " {\n";

    var sparqlQuery = "PREFIX gsdl: <http://localhost:3030/greenstone/data/> \n";
    sparqlQuery += "SELECT ?obj WHERE{"+
					  refineDataset +  
                      "   ?s <"+predicate+"> ?obj }}"+
                      "GROUP BY ?obj ORDER BY (?obj)";
    var ajaxSparqlQuery = sparqlEndpoint + "?query=" + encodeURIComponent(sparqlQuery);

    $.ajax({
        url: ajaxSparqlQuery,
        type:"GET",
        data:"output=json",
    })
    .done(function( json ) {
        var parsedJSON = ((typeof json) == "string") ? $.parseJSON(json) : json;

		//Clear selector. Add empty option to start.
        $('#sel_RefineObject').empty();
		$('#sel_RefineObject')
		.append("<option value=\"None\">  </option>");

        $.each(parsedJSON.results.bindings,function(index,item){
            var obj;
			if(item.obj.type == "uri"){
				obj = "&lt;" + item.obj.value + "&gt;";
            	$('#sel_RefineObject')
                .append("<option value="+ obj + ">" + obj.substring(0,75) + "</option>");
			}
			else{
				obj = item.obj.value;
            	$('#sel_RefineObject')
                .append("<option value=\""+ obj +"\">" + obj.substring(0,75) + "</option>");
			}
        });
		$('#sel_RefineObject').next().find('.custom-combobox-input').val("");
    });
}

function updateRefinePredicateSelector(obj){
    //Perform ajax query to return possible predicate values, given object and predicate values already chosen
    var predicate = $('#sel_Predicate').val();
	var sparqlQuery;
	if(obj.substring(0,1) == "<") 
    sparqlQuery = "SELECT ?predicate WHERE{"+
                      "   ?s <" + predicate + ">  "+ obj + ";"+
                      "      ?predicate ?o}"+
                      "GROUP BY ?predicate ORDER BY DESC(?predicate)";
	else
    sparqlQuery = "SELECT ?predicate WHERE{"+
                      "   ?s <" + predicate + ">  \""+ obj + "\";"+
                      "      ?predicate ?o}"+
                      "GROUP BY ?predicate ORDER BY DESC(?predicate)";
    var ajaxSparqlQuery = sparqlEndpoint + "?query=" + encodeURIComponent(sparqlQuery);

    $.ajax({
        url: ajaxSparqlQuery,
        type:"GET",
        data:"output=json",
    })
    .done(function( json ) {
        var parsedJSON = ((typeof json) == "string") ? $.parseJSON(json) : json;
        $('#sel_RefinePredicate').empty();
		$('#sel_RefinePredicate')
		.append("<option value=\"None\">  </option>");
        $.each(parsedJSON.results.bindings,function(index,item){
            var pred = item.predicate.value;
            var name = tidyPredicate(pred);
            $('#sel_RefinePredicate')
                .append("<option value=\""+pred+"\">" + name + "</option>");
        });
		$('#sel_RefinePredicate').next().find('.custom-combobox-input').val("");
    });
}
function toggle_RefineSearch(enable){
    if(enable)
    {
		
		$('#refineControls').toggle("slide", { direction: "up" });
        //$('#sel_RefinePredicate').removeAttr("disabled");
        //$('#sel_RefineObject').removeAttr("disabled");
    }
    else
    {
		$('#refineControls').toggle("slide", { direction: "up" });
        //$('#sel_RefinePredicate').attr("disabled","disabled");
        //$('#sel_RefineObject').attr("disabled","disabled");
    }
}

function tidyPredicate(name)
{
            name = name.replace("http://purl.org/dc/elements/1.1/","dc.");
            name = name.replace("http://greenstone.org/gsembedded#","gsembedded.");
            name = name.replace("http://greenstone.org/gsextracted#","gsextracted.");
            return name;
}