1 | package org.greenstone.atea;
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2 |
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3 | import java.io.BufferedReader;
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4 | import java.io.BufferedWriter;
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5 | import java.io.File;
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6 | import java.io.FileReader;
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7 | import java.io.FileWriter;
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8 | import java.io.Writer;
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9 |
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10 | import java.util.HashMap;
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11 | import java.util.LinkedList;
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12 | import java.util.List;
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13 | import java.util.Map;
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14 |
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15 | import org.apache.commons.csv.*;
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16 | import org.apache.log4j.Logger;
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17 |
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18 | // Google's gson imports for parsing any kind of json
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19 | import com.google.gson.JsonArray;
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20 | import com.google.gson.JsonElement;
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21 | import com.google.gson.JsonObject;
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22 | import com.google.gson.JsonParser;
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23 |
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24 | // For working with GeoJSON's Simple Features in Java
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25 | import mil.nga.sf.geojson.Feature;
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26 | import mil.nga.sf.geojson.FeatureCollection;
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27 | import mil.nga.sf.geojson.FeatureConverter;
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28 | import mil.nga.sf.geojson.Geometry;
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29 | import mil.nga.sf.geojson.MultiPoint;
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30 | import mil.nga.sf.geojson.Polygon;
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31 | import mil.nga.sf.geojson.Position;
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32 |
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33 |
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34 | /**
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35 | * Run a mongodb query that produces counts per countrycode like in the following 2 examples:
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36 | *
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37 | * 1. count of country codes for all sites
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38 | * db.Websites.aggregate([
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39 | *
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40 | * { $unwind: "$geoLocationCountryCode" },
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41 | * {
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42 | * $group: {
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43 | * _id: "$geoLocationCountryCode",
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44 | * count: { $sum: 1 }
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45 | * }
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46 | * },
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47 | * { $sort : { count : -1} }
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48 | * ]);
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49 | *
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50 | * Then store the mongodb query result's JSON format output in a file called "counts.json".
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51 | * Then run this program with counts.json as parameter
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52 | * Copy the geojson output into http://geojson.tools/
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53 | *
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54 | * 2. count of country codes for sites that have at least one page detected as MRI
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55 | *
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56 | * db.Websites.aggregate([
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57 | * {
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58 | * $match: {
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59 | * numPagesInMRI: {$gt: 0}
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60 | * }
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61 | * },
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62 | * { $unwind: "$geoLocationCountryCode" },
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63 | * {
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64 | * $group: {
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65 | * _id: {$toLower: '$geoLocationCountryCode'},
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66 | * count: { $sum: 1 }
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67 | * }
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68 | * },
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69 | * { $sort : { count : -1} }
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70 | * ]);
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71 | *
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72 | * Store the mongodb query result's JSON format output in a file called "counts_sitesWithPagesInMRI.json".
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73 | * Then run this program with counts_sitesWithPagesInMRI.json as parameter.
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74 | * Copy the geojson output into http://geojson.tools/
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75 | *
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76 | * ##################
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77 | * TO COMPILE:
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78 | * maori-lang-detection/src$
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79 | * javac -cp ".:../conf:../lib/*" org/greenstone/atea/CountryCodeCountsMapData.java
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80 | *
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81 | * TO RUN:
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82 | * maori-lang-detection/src$
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83 | * java -cp ".:../conf:../lib/*" org/greenstone/atea/CountryCodeCountsMapData ../mongodb-data/countrycodes.json ../mongodb-data/counts.json
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84 | *###################
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85 | *
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86 | * This class needs the gson library, and now the sf-geojson(-2.02).jar and
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87 | * helper jars sf(-2.02).jar and 3 jackson jars too,
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88 | * to create and store Simple Features geo json objects with Java.
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89 | * I copied the gson jar file from GS3.
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90 | *
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91 | * Simple Features GeoJSON Java
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92 | * https://ngageoint.github.io/simple-features-geojson-java/ - liks to API and more
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93 | *
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94 | * https://mvnrepository.com/artifact/mil.nga.sf/sf-geojson (https://github.com/ngageoint/simple-features-geojson-java/)
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95 | *
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96 | * Also need the basic data types used by the Geometry objects above:
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97 | * https://mvnrepository.com/artifact/mil.nga/sf (https://github.com/ngageoint/simple-features-java)
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98 | *
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99 | * Further helper jars needed (because of encountering the exception documented at
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100 | * stackoverflow.com/questions/36278293/java-lang-classnotfoundexception-com-fasterxml-jackson-core-jsonprocessingexcep/36279872)
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101 | * https://mvnrepository.com/artifact/com.fasterxml.jackson.core/jackson-core/2.10.0
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102 | * https://mvnrepository.com/artifact/com.fasterxml.jackson.core/jackson-databind
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103 | * https://mvnrepository.com/artifact/com.fasterxml.jackson.core/jackson-annotations/2.10.0
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104 | */
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105 | public class CountryCodeCountsMapData {
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106 | static Logger logger = Logger.getLogger(org.greenstone.atea.CountryCodeCountsMapData.class.getName());
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107 |
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108 | //Map<String, JsonObject> countryToJsonMap;
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109 | JsonArray countryCodesJsonArray;
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110 | JsonArray countryCountsJsonArray;
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111 |
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112 | // North-central Antarctica coords
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113 | private final double ANTARCTICA_LNG = 57.0d;
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114 | private final double ANTARCTICA_LAT = -70.0d;
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115 | // For EU coords, spot in Atlantic Ocean close to western European coast.
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116 | private final double EU_LNG = -20.0d;
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117 | private final double EU_LAT = 50.0d;
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118 |
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119 | private final String geoJsonFilenameWithSuffix;
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120 | private final File outputFolder;
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121 |
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122 | public CountryCodeCountsMapData(String countryCountsJSONFilename) throws Exception {
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123 |
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124 | // work out the unique filename we're going to save the geojson files under
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125 | // and the folder we're going to save them into
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126 | File countryCountsJSONFile = new File(countryCountsJSONFilename);
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127 | String tailname = countryCountsJSONFile.getName();
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128 | this.geoJsonFilenameWithSuffix = (tailname.startsWith("counts_")) ? tailname.substring("counts_".length()) : tailname;
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129 | this.outputFolder = countryCountsJSONFile.getParentFile().getCanonicalFile(); // canonical resolves any .. and . in path
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130 |
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131 | // locate the countrycodes.json file
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132 | File countryCoordsJSONFile = new File(this.getClass().getClassLoader().getResource("countrycodes.json").getFile());
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133 |
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134 | // Create a map of ALL country code names to ALL the country code json objects
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135 | // that contain the location (lat, lng) info for each country code
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136 | Map<String, JsonObject> countryToJsonMap = new HashMap<String, JsonObject>();
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137 |
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138 | // Parse json file of country codes and put into a JsonArray.
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139 | // then put into map of each country code to its JsonObject.
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140 | countryCodesJsonArray = parseJSONFile(countryCoordsJSONFile);
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141 | for(JsonElement obj : countryCodesJsonArray) {
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142 | JsonObject countryCodeJson = obj.getAsJsonObject();
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143 | countryToJsonMap.put(countryCodeJson.get("country").getAsString(), countryCodeJson);
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144 | }
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145 |
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146 | // Parse json file of country code counts
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147 | // Then for each JsonObject in this file,
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148 | // find a match on its country code in the map created above to get a country code JsonObject
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149 | // Get the longitude and latitude of the JsonObject that matched that country code.
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150 | // Add this lng,lat location information to the current JsonObject from the counts file.
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151 | countryCountsJsonArray = parseJSONFile(countryCountsJSONFile);
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152 |
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153 | for(JsonElement obj : countryCountsJsonArray) {
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154 | JsonObject json = obj.getAsJsonObject();
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155 | String countryCode = json.get("_id").getAsString().toUpperCase();
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156 | // set the property back as uppercase and with property name "countrycode" instead of "_id"
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157 | json.remove("_id");
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158 | json.addProperty("countrycode", countryCode);
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159 |
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160 | int count = (int)json.get("count").getAsDouble();
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161 |
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162 | //logger.info("Got country code: " + countryCode);
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163 | //logger.info(" count: " + count);
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164 |
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165 | // locate in countryCode map
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166 | JsonObject countryCodeJson = countryToJsonMap.get(countryCode);
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167 |
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168 | if(countryCodeJson != null) {
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169 | //logger.info("Found in map: " + countryCodeJson.toString());
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170 |
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171 | // for geojson, want longitude then latitude
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172 | Double lng = countryCodeJson.get("longitude").getAsDouble();
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173 | Double lat = countryCodeJson.get("latitude").getAsDouble();
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174 | //logger.info("long: " + Double.toString(lng) + ", lat: " + Double.toString(lat));
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175 | String countryName = countryCodeJson.get("name").getAsString();
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176 |
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177 | // let's add lat and lng fields to countryCounts object
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178 | json.addProperty("lng", lng); // adds Number: https://javadoc.io/static/com.google.code.gson/gson/2.8.5/com/google/gson/JsonObject.html
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179 | json.addProperty("lat", lat);
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180 | json.addProperty("region", countryName);
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181 |
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182 | } else {
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183 | logger.info("No geolocation info found for country code " + countryCode);
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184 | if(countryCode.equals("EU")) {
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185 | //logger.info("Unlisted country code: EU");
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186 | // add lat and lng for Europe
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187 | json.addProperty("lng", EU_LNG);
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188 | json.addProperty("lat", EU_LAT);
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189 | json.addProperty("region", "Europe");
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190 | }
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191 | else if(countryCode.equals("UNKNOWN")) {
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192 | //logger.info("Unlisted country code: UNKNOWN");
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193 | // add lat and lng for Antarctica
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194 | json.addProperty("lng", ANTARCTICA_LNG);
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195 | json.addProperty("lat", ANTARCTICA_LAT);
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196 | json.addProperty("region", "UNKNOWN");
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197 | } else {
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198 | logger.error("ERROR: entirely unknown country code: " + countryCode);
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199 | }
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200 | }
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201 | }
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202 |
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203 | }
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204 |
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205 | /** Convert mongodb tabular output of json records stored in the given file
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206 | * into a JsonArray.
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207 | */
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208 | public JsonArray parseJSONFile(File file) throws Exception {
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209 | JsonArray jsonArray = null;
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210 | // read into string
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211 | try (
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212 | BufferedReader reader = new BufferedReader(new FileReader(file));
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213 | ) {
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214 | StringBuilder str = //new StringBuilder();
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215 | new StringBuilder("[");
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216 | String line;
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217 | while((line = reader.readLine()) != null) {
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218 | line = line.replaceAll("/\\* [^\\/]* \\*/", ""); // get rid of any multiline comments symbols on a single line
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219 | str.append(line);
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220 | if(line.endsWith("}")) {
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221 | str.append(",\n");
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222 | }
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223 | }
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224 | // replace last comma with closing bracket
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225 | String fileContents = str.substring(0, str.length()-2) + "]";
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226 |
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227 | //System.err.println("Got file:\n" + fileContents);
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228 |
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229 | // https://stackoverflow.com/questions/2591098/how-to-parse-json-in-java
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230 | jsonArray = new JsonParser().parse(fileContents).getAsJsonArray();
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231 |
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232 | } catch(Exception e) {
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233 | throw e;
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234 | }
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235 |
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236 |
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237 | return jsonArray;
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238 | }
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239 |
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240 | /**
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241 | * Reading
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242 | * https://www.here.xyz/api/concepts/geojsonbasics/
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243 | * https://ngageoint.github.io/simple-features-geojson-java/docs/api/
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244 | *
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245 | * https://stackoverflow.com/questions/55621480/cant-access-coordinates-member-of-geojson-feature-collection
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246 | *
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247 | * Downloaded geojson simple features' jar file from maven, but it didn't work:
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248 | * a more private version of MultiPoint.java is not included in the jar file (there's only
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249 | * mil.nga.sf.geojson.MultiPoint , whereas
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250 | * mil.nga.sf.MultiPoint is missing
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251 | *
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252 | * This seems to have gone wrong at
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253 | * https://github.com/ngageoint/simple-features-geojson-java/tree/master/src/main/java/mil/nga/sf
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254 | * but the one at
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255 | * https://github.com/ngageoint/simple-features-java/tree/master/src/main/java/mil/nga/sf
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256 | * has it. So I've been trying to build that, but don't have the correct version of maven.
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257 | */
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258 | public Geometry toMultiPointGeoJson() {
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259 | //System.err.println("toGeoJSON() is not yet implemented.");
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260 |
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261 | List<Position> points = new LinkedList<Position>();
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262 |
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263 | for(JsonElement obj : this.countryCountsJsonArray) {
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264 | JsonObject json = obj.getAsJsonObject();
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265 | Double lng = json.get("lng").getAsDouble();
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266 | Double lat = json.get("lat").getAsDouble();
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267 |
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268 | Position point = new Position(lng, lat);
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269 | points.add(point);
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270 | }
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271 |
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272 | Geometry multiPoint = new MultiPoint(points);
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273 |
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274 | return multiPoint;
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275 | }
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276 |
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277 | // https://javadoc.io/static/com.google.code.gson/gson/2.8.5/index.html
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278 | public FeatureCollection toFeatureCollection() {
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279 | final int HISTOGRAM_WIDTH = 4;
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280 |
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281 | FeatureCollection featureCollection = new FeatureCollection();
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282 |
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283 | for(JsonElement obj : this.countryCountsJsonArray) {
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284 | JsonObject json = obj.getAsJsonObject();
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285 |
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286 | String countryCode = json.get("countrycode").getAsString();
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287 | String region = json.get("region").getAsString();
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288 | int count = json.get("count").getAsInt();
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289 |
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290 | // make a histogram for each country
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291 | Geometry rectangle = this.toPolygon(json, count, HISTOGRAM_WIDTH);
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292 |
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293 | Feature countryFeature = new Feature(rectangle);
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294 | Map<String, Object> featureProperties = new HashMap<String, Object>();
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295 | featureProperties.put("count", new Integer(count));
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296 | featureProperties.put("code", countryCode);
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297 | featureProperties.put("region", region);
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298 | countryFeature.setProperties(featureProperties);
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299 |
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300 | featureCollection.addFeature(countryFeature);
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301 | }
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302 |
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303 | return featureCollection;
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304 | }
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305 |
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306 | // create rectangular "histogram" for each country code
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307 | private Geometry toPolygon(JsonObject json, int count, int HISTOGRAM_WIDTH) {
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308 | int half_width = HISTOGRAM_WIDTH/2;
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309 | double vertical_factor = 1.0;
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310 |
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311 | Double lng = json.get("lng").getAsDouble();
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312 | Double lat = json.get("lat").getAsDouble();
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313 |
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314 | String countryCode = json.get("countrycode").getAsString();
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315 |
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316 |
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317 | //create the 4 corners of the rectangle
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318 | // West is negative, east is positive, south is negative, north is positive
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319 | // See http://www.learnz.org.nz/sites/learnz.org.nz/files/lat-long-geo-data-01_0.jpg
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320 | // But since the histograms grow vertically/northwards and we can't go past a latitude of 90,
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321 | // to compensate, we increase the width of the histograms by the same factor as our inability
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322 | // to grow northwards.
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323 | Double north = lat + (vertical_factor * count);
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324 | while (north > 90) {
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325 | // recalculate north after decreasing histogram's vertical growth
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326 | // by the same factor as we increase its width
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327 | vertical_factor = vertical_factor/2.0;
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328 | half_width = 2 * half_width;
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329 | north = lat + (vertical_factor * count);
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330 | }
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331 | Double east = lng + half_width;
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332 | Double west = lng - half_width;
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333 | Double south = lat;
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334 |
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335 | List<List<Position>> outerList = new LinkedList<List<Position>>();
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336 | List<Position> points = new LinkedList<Position>();
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337 | outerList.add(points);
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338 |
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339 |
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340 | points.add(new Position(west, south)); // Position(lng, lat) not Position(lat, lng)
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341 | points.add(new Position(west, north));
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342 | points.add(new Position(east, north));
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343 | points.add(new Position(east, south));
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344 |
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345 |
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346 | Geometry rectangle = new Polygon(outerList);
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347 |
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348 | // Coords: a List of List of Positions, see https://ngageoint.github.io/simple-features-geojson-java/docs/api/
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349 | // https://www.here.xyz/api/concepts/geojsonbasics/#polygon
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350 |
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351 | return rectangle;
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352 | }
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353 |
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354 | public String writeMultiPointGeoJsonToFile() {
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355 | final String filename = "multipoint_" + this.geoJsonFilenameWithSuffix;
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356 | File outFile = new File(this.outputFolder, filename);
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357 |
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358 | Geometry geometry = this.toMultiPointGeoJson();
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359 | String multiPointGeojsonString = FeatureConverter.toStringValue(geometry);
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360 | System.err.println("\nMap data as MultiPoint geometry:\n" + multiPointGeojsonString + "\n");
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361 | try (
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362 | Writer writer = new BufferedWriter(new FileWriter(outFile));
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363 | ) {
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364 |
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365 | // Some basic re-formatting for some immediate legibility
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366 | // But pasting the contents of the file (or the System.err output above)
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367 | // directly into http://geojson.tools/ will instantly reformat the json perfectly anyway.
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368 | multiPointGeojsonString = multiPointGeojsonString.replace("[[", "\n[\n\t[");
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369 | multiPointGeojsonString = multiPointGeojsonString.replace("],[", "],\n\t[");
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370 | multiPointGeojsonString = multiPointGeojsonString.replace("]]", "]\n]");
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371 |
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372 | writer.write(multiPointGeojsonString + "\n");
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373 | } catch(Exception e) {
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374 | logger.error("Unable to write multipoint geojson:\n**********************");
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375 | logger.error(multiPointGeojsonString);
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376 | logger.error("**********************\ninto file " + outFile.getAbsolutePath());
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377 | logger.error(e.getMessage(), e);
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378 | }
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379 |
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380 | return outFile.getAbsolutePath();
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381 |
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382 | }
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383 |
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384 | public String writeFeaturesGeoJsonToFile() {
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385 | final String filename = "geojson-features_" + this.geoJsonFilenameWithSuffix;
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386 | File outFile = new File(this.outputFolder, filename);
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387 |
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388 | FeatureCollection featureColl = this.toFeatureCollection();
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389 | String featuresGeojsonString = FeatureConverter.toStringValue(featureColl);
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390 | System.err.println("\nMap data as featurecollection:\n" + featuresGeojsonString + "\n");
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391 | try (
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392 | Writer writer = new BufferedWriter(new FileWriter(outFile));
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393 | ) {
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394 |
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395 | writer.write(featuresGeojsonString + "\n");
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396 | } catch(Exception e) {
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397 | logger.error("Unable to write multipoint geojson:\n**********************");
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398 | logger.error(featuresGeojsonString);
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399 | logger.error("**********************\ninto file " + outFile.getAbsolutePath());
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400 | logger.error(e.getMessage(), e);
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401 | }
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402 |
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403 | return outFile.getAbsolutePath();
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404 |
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405 | }
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406 |
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407 |
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408 | public int getTotalCount() {
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409 | int total = 0;
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410 | for(JsonElement obj : this.countryCountsJsonArray) {
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411 | JsonObject json = obj.getAsJsonObject();
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412 | int count = json.get("count").getAsInt();
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413 | total += count;
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414 | }
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415 | return total;
|
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416 | }
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417 |
|
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418 |
|
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419 | // Unfinished and unused
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420 | public void parseCSVFile(String filename) throws Exception {
|
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421 | File csvData = new File(filename);
|
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422 | CSVParser parser = CSVParser.parse(csvData, java.nio.charset.Charset.forName("US-ASCII"), CSVFormat.RFC4180);
|
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423 | for (CSVRecord csvRecord : parser) {
|
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424 | logger.info("Got record: " + csvRecord.toString());
|
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425 | }
|
---|
426 | }
|
---|
427 |
|
---|
428 | public static void printUsage() {
|
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429 | System.err.println("CountryCodeCountsMapData <counts-by-countrycode-file>.json");
|
---|
430 | }
|
---|
431 |
|
---|
432 | public static void main(String args[]) {
|
---|
433 | if(args.length != 1) {
|
---|
434 | printUsage();
|
---|
435 | System.exit(-1);
|
---|
436 | }
|
---|
437 |
|
---|
438 | try {
|
---|
439 | File countsFile = new File(args[0]);
|
---|
440 |
|
---|
441 | CountryCodeCountsMapData mapData = new CountryCodeCountsMapData(args[0]);
|
---|
442 |
|
---|
443 | String multipointOutFileName = mapData.writeMultiPointGeoJsonToFile();
|
---|
444 | String featuresOutFileName = mapData.writeFeaturesGeoJsonToFile();
|
---|
445 |
|
---|
446 | System.err.println("***********\nWrote mapdata to files " + multipointOutFileName
|
---|
447 | + " and " + featuresOutFileName);
|
---|
448 | System.err.println("You can paste the geojson contents of either of these files into the "
|
---|
449 | + "editor at http://geojson.tools/ to see the data arranged on a world map");
|
---|
450 |
|
---|
451 | System.err.println("Total count for query: " + mapData.getTotalCount());
|
---|
452 |
|
---|
453 | } catch(Exception e) {
|
---|
454 | logger.error(e.getMessage(), e);
|
---|
455 | }
|
---|
456 | }
|
---|
457 | }
|
---|