1 | /*
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2 | * This program is free software; you can redistribute it and/or modify
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3 | * it under the terms of the GNU General Public License as published by
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4 | * the Free Software Foundation; either version 2 of the License, or
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5 | * (at your option) any later version.
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6 | *
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7 | * This program is distributed in the hope that it will be useful,
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8 | * but WITHOUT ANY WARRANTY; without even the implied warranty of
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9 | * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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10 | * GNU General Public License for more details.
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11 | *
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12 | * You should have received a copy of the GNU General Public License
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13 | * along with this program; if not, write to the Free Software
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14 | * Foundation, Inc., 675 Mass Ave, Cambridge, MA 02139, USA.
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15 | */
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16 |
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17 | /*
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18 | * DiscretizeFilter.java
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19 | * Copyright (C) 1999 Eibe Frank,Len Trigg
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20 | *
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21 | */
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22 |
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23 |
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24 | package weka.filters;
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25 |
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26 | import java.io.*;
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27 | import java.util.*;
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28 | import weka.core.*;
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29 |
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30 | /**
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31 | * An instance filter that discretizes a range of numeric attributes in
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32 | * the dataset into nominal attributes. Discretization can be either by
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33 | * simple binning, or by Fayyad & Irani's MDL method (the default).<p>
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34 | *
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35 | * Valid filter-specific options are: <p>
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36 | *
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37 | * -B num <br>
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38 | * Specifies the (maximum) number of bins to divide numeric attributes into.
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39 | * (default: class-based discretisation).<p>
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40 | *
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41 | * -F <br>
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42 | * Use equal-frequency instead of equal-width discretization if
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43 | * class-based discretisation is turned off.<p>
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44 | *
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45 | * -O <br>
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46 | * Optimize the number of bins using a leave-one-out estimate of the
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47 | * entropy (for equal-width binning).<p>
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48 | *
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49 | * -R col1,col2-col4,... <br>
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50 | * Specifies list of columns to Discretize. First
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51 | * and last are valid indexes. (default: none) <p>
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52 | *
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53 | * -V <br>
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54 | * Invert matching sense.<p>
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55 | *
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56 | * -D <br>
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57 | * Make binary nominal attributes. <p>
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58 | *
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59 | * -E <br>
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60 | * Use better encoding of split point for MDL. <p>
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61 | *
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62 | * -K <br>
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63 | * Use Kononeko's MDL criterion. <p>
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64 | *
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65 | * @author Len Trigg ([email protected])
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66 | * @author Eibe Frank ([email protected])
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67 | * @version $Revision: 8815 $
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68 | */
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69 | public class DiscretizeFilter extends Filter
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70 | implements OptionHandler, WeightedInstancesHandler {
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71 |
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72 | /** Stores which columns to Discretize */
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73 | protected Range m_DiscretizeCols = new Range();
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74 |
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75 | /** The number of bins to divide the attribute into */
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76 | protected int m_NumBins = 10;
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77 |
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78 | /** Store the current cutpoints */
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79 | protected double [][] m_CutPoints = null;
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80 |
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81 | /** True if discretisation will be done by MDL rather than binning */
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82 | protected boolean m_UseMDL = true;
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83 |
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84 | /** Output binary attributes for discretized attributes. */
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85 | protected boolean m_MakeBinary = false;
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86 |
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87 | /** Use better encoding of split point for MDL. */
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88 | protected boolean m_UseBetterEncoding = false;
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89 |
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90 | /** Use Kononenko's MDL criterion instead of Fayyad et al.'s */
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91 | protected boolean m_UseKononenko = false;
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92 |
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93 | /** Find the number of bins using cross-validated entropy. */
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94 | protected boolean m_FindNumBins = false;
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95 |
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96 | /** Use equal-frequency binning if unsupervised discretization turned on */
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97 | protected boolean m_UseEqualFrequency = false;
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98 |
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99 | /** Constructor - initialises the filter */
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100 | public DiscretizeFilter() {
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101 |
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102 | setAttributeIndices("first-last");
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103 | }
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104 |
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105 |
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106 | /**
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107 | * Gets an enumeration describing the available options
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108 | *
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109 | * @return an enumeration of all the available options
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110 | */
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111 | public Enumeration listOptions() {
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112 |
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113 | Vector newVector = new Vector(7);
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114 |
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115 | newVector.addElement(new Option(
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116 | "\tSpecifies the (maximum) number of bins to divide numeric"
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117 | + " attributes into.\n"
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118 | + "\t(default class-based discretization)",
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119 | "B", 1, "-B <num>"));
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120 |
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121 | newVector.addElement(new Option(
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122 | "\tUse equal-frequency instead of equal-width with\n"+
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123 | "\tunsupervised discretization.",
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124 | "F", 0, "-F"));
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125 |
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126 | newVector.addElement(new Option(
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127 | "\tOptimize number of bins using leave-one-out estimate\n"+
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128 | "\tof estimated entropy (for equal-width discretization).",
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129 | "O", 0, "-O"));
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130 |
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131 | /* If we decide to implement loading and saving cutfiles like
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132 | * the C Discretizer (which is probably not necessary)
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133 | newVector.addElement(new Option(
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134 | "\tSpecify that the cutpoints should be loaded from a file.",
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135 | "L", 1, "-L <file>"));
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136 | newVector.addElement(new Option(
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137 | "\tSpecify that the chosen cutpoints should be saved to a file.",
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138 | "S", 1, "-S <file>"));
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139 | */
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140 |
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141 | newVector.addElement(new Option(
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142 | "\tSpecifies list of columns to Discretize. First"
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143 | + " and last are valid indexes.\n"
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144 | + "\t(default none)",
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145 | "R", 1, "-R <col1,col2-col4,...>"));
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146 |
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147 | newVector.addElement(new Option(
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148 | "\tInvert matching sense of column indexes.",
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149 | "V", 0, "-V"));
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150 |
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151 | newVector.addElement(new Option(
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152 | "\tOutput binary attributes for discretized attributes.",
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153 | "D", 0, "-D"));
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154 |
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155 | newVector.addElement(new Option(
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156 | "\tUse better encoding of split point for MDL.",
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157 | "E", 0, "-E"));
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158 |
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159 | newVector.addElement(new Option(
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160 | "\tUse Kononenko's MDL criterion.",
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161 | "K", 0, "-K"));
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162 |
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163 | return newVector.elements();
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164 | }
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165 |
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166 |
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167 | /**
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168 | * Parses the options for this object. Valid options are: <p>
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169 | *
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170 | * -B num <br>
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171 | * Specifies the (maximum) number of bins to divide numeric attributes into.
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172 | * (default class-based discretisation).<p>
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173 | *
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174 | * -F <br>
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175 | * Use equal-frequency instead of equal-width discretization if
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176 | * class-based discretisation is turned off.<p>
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177 | *
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178 | * -O <br>
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179 | * Optimize the number of bins using a leave-one-out estimate of the
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180 | * entropy (for equal-width binning).<p>
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181 | *
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182 | * -R col1,col2-col4,... <br>
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183 | * Specifies list of columns to Discretize. First
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184 | * and last are valid indexes. (default none) <p>
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185 | *
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186 | * -V <br>
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187 | * Invert matching sense.<p>
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188 | *
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189 | * -D <br>
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190 | * Make binary nominal attributes. <p>
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191 | *
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192 | * -E <br>
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193 | * Use better encoding of split point for MDL. <p>
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194 | *
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195 | * -K <br>
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196 | * Use Kononeko's MDL criterion. <p>
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197 | *
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198 | * @param options the list of options as an array of strings
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199 | * @exception Exception if an option is not supported
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200 | */
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201 | public void setOptions(String[] options) throws Exception {
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202 |
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203 | setMakeBinary(Utils.getFlag('D', options));
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204 | setUseEqualFrequency(Utils.getFlag('F', options));
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205 | setUseBetterEncoding(Utils.getFlag('E', options));
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206 | setUseKononenko(Utils.getFlag('K', options));
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207 | setFindNumBins(Utils.getFlag('O', options));
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208 | setInvertSelection(Utils.getFlag('V', options));
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209 | setUseMDL(true);
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210 |
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211 | String numBins = Utils.getOption('B', options);
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212 | if (numBins.length() != 0) {
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213 | setBins(Integer.parseInt(numBins));
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214 | setUseMDL(false);
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215 | } else {
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216 | setBins(10);
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217 | }
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218 |
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219 | String convertList = Utils.getOption('R', options);
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220 | if (convertList.length() != 0) {
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221 | setAttributeIndices(convertList);
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222 | } else {
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223 | setAttributeIndices("first-last");
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224 | }
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225 |
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226 | if (getInputFormat() != null) {
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227 | setInputFormat(getInputFormat());
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228 | }
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229 | }
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230 | /**
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231 | * Gets the current settings of the filter.
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232 | *
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233 | * @return an array of strings suitable for passing to setOptions
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234 | */
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235 | public String [] getOptions() {
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236 |
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237 | String [] options = new String [12];
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238 | int current = 0;
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239 |
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240 | if (getMakeBinary()) {
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241 | options[current++] = "-D";
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242 | }
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243 | if (getUseEqualFrequency()) {
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244 | options[current++] = "-F";
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245 | }
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246 | if (getUseBetterEncoding()) {
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247 | options[current++] = "-E";
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248 | }
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249 | if (getUseKononenko()) {
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250 | options[current++] = "-K";
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251 | }
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252 | if (getFindNumBins()) {
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253 | options[current++] = "-O";
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254 | }
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255 | if (getInvertSelection()) {
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256 | options[current++] = "-V";
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257 | }
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258 | if (!getUseMDL()) {
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259 | options[current++] = "-B"; options[current++] = "" + getBins();
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260 | }
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261 | if (!getAttributeIndices().equals("")) {
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262 | options[current++] = "-R"; options[current++] = getAttributeIndices();
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263 | }
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264 | while (current < options.length) {
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265 | options[current++] = "";
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266 | }
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267 | return options;
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268 | }
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269 |
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270 |
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271 | /**
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272 | * Sets the format of the input instances.
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273 | *
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274 | * @param instanceInfo an Instances object containing the input instance
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275 | * structure (any instances contained in the object are ignored - only the
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276 | * structure is required).
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277 | * @return true if the outputFormat may be collected immediately
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278 | * @exception Exception if the input format can't be set successfully
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279 | */
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280 | public boolean setInputFormat(Instances instanceInfo) throws Exception {
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281 |
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282 | super.setInputFormat(instanceInfo);
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283 |
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284 | m_DiscretizeCols.setUpper(instanceInfo.numAttributes() - 1);
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285 | m_CutPoints = null;
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286 | if (m_UseMDL) {
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287 | if (instanceInfo.classIndex() < 0) {
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288 | throw new UnassignedClassException("Cannot use class-based discretization: "
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289 | + "no class assigned to the dataset");
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290 | }
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291 | if (!instanceInfo.classAttribute().isNominal()) {
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292 | throw new UnsupportedClassTypeException("Supervised discretization not possible:"
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293 | + " class is not nominal!");
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294 | }
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295 | } else {
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296 | if (getFindNumBins() && getUseEqualFrequency()) {
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297 | throw new IllegalArgumentException("Bin number optimization in conjunction "+
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298 | "with equal-frequency binning not implemented.");
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299 | }
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300 | }
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301 |
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302 | // If we implement loading cutfiles, then load
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303 | //them here and set the output format
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304 | return false;
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305 | }
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306 |
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307 |
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308 |
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309 | /**
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310 | * Input an instance for filtering. Ordinarily the instance is processed
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311 | * and made available for output immediately. Some filters require all
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312 | * instances be read before producing output.
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313 | *
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314 | * @param instance the input instance
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315 | * @return true if the filtered instance may now be
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316 | * collected with output().
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317 | * @exception IllegalStateException if no input format has been defined.
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318 | */
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319 | public boolean input(Instance instance) {
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320 |
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321 | if (getInputFormat() == null) {
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322 | throw new IllegalStateException("No input instance format defined");
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323 | }
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324 | if (m_NewBatch) {
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325 | resetQueue();
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326 | m_NewBatch = false;
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327 | }
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328 |
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329 | if (m_CutPoints != null) {
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330 | convertInstance(instance);
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331 | return true;
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332 | }
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333 |
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334 | bufferInput(instance);
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335 | return false;
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336 | }
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337 |
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338 |
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339 | /**
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340 | * Signifies that this batch of input to the filter is finished. If the
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341 | * filter requires all instances prior to filtering, output() may now
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342 | * be called to retrieve the filtered instances.
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343 | *
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344 | * @return true if there are instances pending output
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345 | * @exception IllegalStateException if no input structure has been defined
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346 | */
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347 | public boolean batchFinished() {
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348 |
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349 | if (getInputFormat() == null) {
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350 | throw new IllegalStateException("No input instance format defined");
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351 | }
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352 | if (m_CutPoints == null) {
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353 | calculateCutPoints();
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354 |
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355 | setOutputFormat();
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356 |
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357 | // If we implement saving cutfiles, save the cuts here
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358 |
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359 | // Convert pending input instances
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360 | for(int i = 0; i < getInputFormat().numInstances(); i++) {
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361 | convertInstance(getInputFormat().instance(i));
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362 | }
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363 | }
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364 | flushInput();
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365 |
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366 | m_NewBatch = true;
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367 | return (numPendingOutput() != 0);
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368 | }
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369 |
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370 | /**
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371 | * Returns a string describing this filter
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372 | *
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373 | * @return a description of the filter suitable for
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374 | * displaying in the explorer/experimenter gui
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375 | */
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376 | public String globalInfo() {
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377 |
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378 | return "An instance filter that discretizes a range of numeric"
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379 | + " attributes in the dataset into nominal attributes."
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380 | + " Discretization can be either by simple binning, or by"
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381 | + " Fayyad & Irani's MDL method (the default).";
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382 | }
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383 |
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384 | /**
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385 | * Returns the tip text for this property
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386 | *
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387 | * @return tip text for this property suitable for
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388 | * displaying in the explorer/experimenter gui
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389 | */
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390 | public String findNumBinsTipText() {
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391 |
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392 | return "Optimize number of equal-width bins using leave-one-out.";
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393 | }
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394 |
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395 | /**
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396 | * Get the value of FindNumBins.
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397 | *
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398 | * @return Value of FindNumBins.
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399 | */
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400 | public boolean getFindNumBins() {
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401 |
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402 | return m_FindNumBins;
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403 | }
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404 |
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405 | /**
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406 | * Set the value of FindNumBins.
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407 | *
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408 | * @param newFindNumBins Value to assign to FindNumBins.
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409 | */
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410 | public void setFindNumBins(boolean newFindNumBins) {
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411 |
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412 | m_FindNumBins = newFindNumBins;
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413 | }
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414 |
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415 | /**
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416 | * Returns the tip text for this property
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417 | *
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418 | * @return tip text for this property suitable for
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419 | * displaying in the explorer/experimenter gui
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420 | */
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421 | public String makeBinaryTipText() {
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422 |
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423 | return "Make resulting attributes binary.";
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424 | }
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425 |
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426 | /**
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427 | * Gets whether binary attributes should be made for discretized ones.
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428 | *
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429 | * @return true if attributes will be binarized
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430 | */
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431 | public boolean getMakeBinary() {
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432 |
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433 | return m_MakeBinary;
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434 | }
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435 |
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436 | /**
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437 | * Sets whether binary attributes should be made for discretized ones.
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438 | *
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439 | * @param makeBinary if binary attributes are to be made
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440 | */
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441 | public void setMakeBinary(boolean makeBinary) {
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442 |
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443 | m_MakeBinary = makeBinary;
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444 | }
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445 |
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446 | /**
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447 | * Returns the tip text for this property
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448 | *
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449 | * @return tip text for this property suitable for
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450 | * displaying in the explorer/experimenter gui
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451 | */
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452 | public String useMDLTipText() {
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453 |
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454 | return "Use class-based discretization. If set to false, does"
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455 | + " not require a class attribute, and uses a fixed number"
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456 | + " of bins (according to bins setting).";
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457 | }
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458 |
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459 | /**
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460 | * Gets whether MDL will be used as the discretisation method.
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461 | *
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462 | * @return true if so, false if fixed bins should be used.
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463 | */
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464 | public boolean getUseMDL() {
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465 |
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466 | return m_UseMDL;
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467 | }
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468 |
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469 | /**
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470 | * Sets whether MDL will be used as the discretisation method.
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471 | *
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472 | * @param useMDL true if MDL should be used, false if fixed bins should
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473 | * be used.
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474 | */
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475 | public void setUseMDL(boolean useMDL) {
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476 |
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477 | m_UseMDL = useMDL;
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478 | }
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479 |
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480 | /**
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481 | * Returns the tip text for this property
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482 | *
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483 | * @return tip text for this property suitable for
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484 | * displaying in the explorer/experimenter gui
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485 | */
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486 | public String useKononenkoTipText() {
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487 |
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488 | return "Use Kononenko's MDL criterion. If set to false"
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489 | + " uses the Fayyad & Irani criterion.";
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490 | }
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491 |
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492 | /**
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493 | * Get the value of UseEqualFrequency.
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494 | *
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495 | * @return Value of UseEqualFrequency.
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496 | */
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497 | public boolean getUseEqualFrequency() {
|
---|
498 |
|
---|
499 | return m_UseEqualFrequency;
|
---|
500 | }
|
---|
501 |
|
---|
502 | /**
|
---|
503 | * Set the value of UseEqualFrequency.
|
---|
504 | *
|
---|
505 | * @param newUseEqualFrequency Value to assign to UseEqualFrequency.
|
---|
506 | */
|
---|
507 | public void setUseEqualFrequency(boolean newUseEqualFrequency) {
|
---|
508 |
|
---|
509 | m_UseEqualFrequency = newUseEqualFrequency;
|
---|
510 | }
|
---|
511 |
|
---|
512 | /**
|
---|
513 | * Gets whether Kononenko's MDL criterion is to be used.
|
---|
514 | *
|
---|
515 | * @return true if Kononenko's criterion will be used.
|
---|
516 | */
|
---|
517 | public boolean getUseKononenko() {
|
---|
518 |
|
---|
519 | return m_UseKononenko;
|
---|
520 | }
|
---|
521 |
|
---|
522 | /**
|
---|
523 | * Sets whether Kononenko's MDL criterion is to be used.
|
---|
524 | *
|
---|
525 | * @param useKon true if Kononenko's one is to be used
|
---|
526 | */
|
---|
527 | public void setUseKononenko(boolean useKon) {
|
---|
528 |
|
---|
529 | m_UseKononenko = useKon;
|
---|
530 | }
|
---|
531 |
|
---|
532 | /**
|
---|
533 | * Returns the tip text for this property
|
---|
534 | *
|
---|
535 | * @return tip text for this property suitable for
|
---|
536 | * displaying in the explorer/experimenter gui
|
---|
537 | */
|
---|
538 | public String useBetterEncodingTipText() {
|
---|
539 |
|
---|
540 | return "Uses a more efficient split point encoding.";
|
---|
541 | }
|
---|
542 |
|
---|
543 | /**
|
---|
544 | * Gets whether better encoding is to be used for MDL.
|
---|
545 | *
|
---|
546 | * @return true if the better MDL encoding will be used
|
---|
547 | */
|
---|
548 | public boolean getUseBetterEncoding() {
|
---|
549 |
|
---|
550 | return m_UseBetterEncoding;
|
---|
551 | }
|
---|
552 |
|
---|
553 | /**
|
---|
554 | * Sets whether better encoding is to be used for MDL.
|
---|
555 | *
|
---|
556 | * @param useBetterEncoding true if better encoding to be used.
|
---|
557 | */
|
---|
558 | public void setUseBetterEncoding(boolean useBetterEncoding) {
|
---|
559 |
|
---|
560 | m_UseBetterEncoding = useBetterEncoding;
|
---|
561 | }
|
---|
562 |
|
---|
563 | /**
|
---|
564 | * Returns the tip text for this property
|
---|
565 | *
|
---|
566 | * @return tip text for this property suitable for
|
---|
567 | * displaying in the explorer/experimenter gui
|
---|
568 | */
|
---|
569 | public String binsTipText() {
|
---|
570 |
|
---|
571 | return "Number of bins for class-blind discretisation. This"
|
---|
572 | + " setting is ignored if MDL-based discretisation is used.";
|
---|
573 | }
|
---|
574 |
|
---|
575 | /**
|
---|
576 | * Gets the number of bins numeric attributes will be divided into
|
---|
577 | *
|
---|
578 | * @return the number of bins.
|
---|
579 | */
|
---|
580 | public int getBins() {
|
---|
581 |
|
---|
582 | return m_NumBins;
|
---|
583 | }
|
---|
584 |
|
---|
585 | /**
|
---|
586 | * Sets the number of bins to divide each selected numeric attribute into
|
---|
587 | *
|
---|
588 | * @param numBins the number of bins
|
---|
589 | */
|
---|
590 | public void setBins(int numBins) {
|
---|
591 |
|
---|
592 | m_NumBins = numBins;
|
---|
593 | }
|
---|
594 |
|
---|
595 | /**
|
---|
596 | * Returns the tip text for this property
|
---|
597 | *
|
---|
598 | * @return tip text for this property suitable for
|
---|
599 | * displaying in the explorer/experimenter gui
|
---|
600 | */
|
---|
601 | public String invertSelectionTipText() {
|
---|
602 |
|
---|
603 | return "Set attribute selection mode. If false, only selected"
|
---|
604 | + " (numeric) attributes in the range will be discretized; if"
|
---|
605 | + " true, only non-selected attributes will be discretized.";
|
---|
606 | }
|
---|
607 |
|
---|
608 | /**
|
---|
609 | * Gets whether the supplied columns are to be removed or kept
|
---|
610 | *
|
---|
611 | * @return true if the supplied columns will be kept
|
---|
612 | */
|
---|
613 | public boolean getInvertSelection() {
|
---|
614 |
|
---|
615 | return m_DiscretizeCols.getInvert();
|
---|
616 | }
|
---|
617 |
|
---|
618 | /**
|
---|
619 | * Sets whether selected columns should be removed or kept. If true the
|
---|
620 | * selected columns are kept and unselected columns are deleted. If false
|
---|
621 | * selected columns are deleted and unselected columns are kept.
|
---|
622 | *
|
---|
623 | * @param invert the new invert setting
|
---|
624 | */
|
---|
625 | public void setInvertSelection(boolean invert) {
|
---|
626 |
|
---|
627 | m_DiscretizeCols.setInvert(invert);
|
---|
628 | }
|
---|
629 |
|
---|
630 | /**
|
---|
631 | * Returns the tip text for this property
|
---|
632 | *
|
---|
633 | * @return tip text for this property suitable for
|
---|
634 | * displaying in the explorer/experimenter gui
|
---|
635 | */
|
---|
636 | public String attributeIndicesTipText() {
|
---|
637 | return "Specify range of attributes to act on."
|
---|
638 | + " This is a comma separated list of attribute indices, with"
|
---|
639 | + " \"first\" and \"last\" valid values. Specify an inclusive"
|
---|
640 | + " range with \"-\". E.g: \"first-3,5,6-10,last\".";
|
---|
641 | }
|
---|
642 |
|
---|
643 | /**
|
---|
644 | * Gets the current range selection
|
---|
645 | *
|
---|
646 | * @return a string containing a comma separated list of ranges
|
---|
647 | */
|
---|
648 | public String getAttributeIndices() {
|
---|
649 |
|
---|
650 | return m_DiscretizeCols.getRanges();
|
---|
651 | }
|
---|
652 |
|
---|
653 | /**
|
---|
654 | * Sets which attributes are to be Discretized (only numeric
|
---|
655 | * attributes among the selection will be Discretized).
|
---|
656 | *
|
---|
657 | * @param rangeList a string representing the list of attributes. Since
|
---|
658 | * the string will typically come from a user, attributes are indexed from
|
---|
659 | * 1. <br>
|
---|
660 | * eg: first-3,5,6-last
|
---|
661 | * @exception IllegalArgumentException if an invalid range list is supplied
|
---|
662 | */
|
---|
663 | public void setAttributeIndices(String rangeList) {
|
---|
664 |
|
---|
665 | m_DiscretizeCols.setRanges(rangeList);
|
---|
666 | }
|
---|
667 |
|
---|
668 | /**
|
---|
669 | * Sets which attributes are to be Discretized (only numeric
|
---|
670 | * attributes among the selection will be Discretized).
|
---|
671 | *
|
---|
672 | * @param attributes an array containing indexes of attributes to Discretize.
|
---|
673 | * Since the array will typically come from a program, attributes are indexed
|
---|
674 | * from 0.
|
---|
675 | * @exception IllegalArgumentException if an invalid set of ranges
|
---|
676 | * is supplied
|
---|
677 | */
|
---|
678 | public void setAttributeIndicesArray(int [] attributes) {
|
---|
679 |
|
---|
680 | setAttributeIndices(Range.indicesToRangeList(attributes));
|
---|
681 | }
|
---|
682 |
|
---|
683 | /**
|
---|
684 | * Gets the cut points for an attribute
|
---|
685 | *
|
---|
686 | * @param the index (from 0) of the attribute to get the cut points of
|
---|
687 | * @return an array containing the cutpoints (or null if the
|
---|
688 | * attribute requested isn't being Discretized
|
---|
689 | */
|
---|
690 | public double [] getCutPoints(int attributeIndex) {
|
---|
691 |
|
---|
692 | if (m_CutPoints == null) {
|
---|
693 | return null;
|
---|
694 | }
|
---|
695 | return m_CutPoints[attributeIndex];
|
---|
696 | }
|
---|
697 |
|
---|
698 | /** Generate the cutpoints for each attribute */
|
---|
699 | protected void calculateCutPoints() {
|
---|
700 |
|
---|
701 | Instances copy = null;
|
---|
702 |
|
---|
703 | m_CutPoints = new double [getInputFormat().numAttributes()] [];
|
---|
704 | for(int i = getInputFormat().numAttributes() - 1; i >= 0; i--) {
|
---|
705 | if ((m_DiscretizeCols.isInRange(i)) &&
|
---|
706 | (getInputFormat().attribute(i).isNumeric())) {
|
---|
707 | if (m_UseMDL) {
|
---|
708 |
|
---|
709 | // Use copy to preserve order
|
---|
710 | if (copy == null) {
|
---|
711 | copy = new Instances(getInputFormat());
|
---|
712 | }
|
---|
713 | calculateCutPointsByMDL(i, copy);
|
---|
714 | } else {
|
---|
715 | if (m_FindNumBins) {
|
---|
716 | findNumBins(i);
|
---|
717 | } else if (!m_UseEqualFrequency) {
|
---|
718 | calculateCutPointsByEqualWidthBinning(i);
|
---|
719 | } else {
|
---|
720 | calculateCutPointsByEqualFrequencyBinning(i);
|
---|
721 | }
|
---|
722 | }
|
---|
723 | }
|
---|
724 | }
|
---|
725 | }
|
---|
726 |
|
---|
727 | /**
|
---|
728 | * Set cutpoints for a single attribute using MDL.
|
---|
729 | *
|
---|
730 | * @param index the index of the attribute to set cutpoints for
|
---|
731 | */
|
---|
732 | protected void calculateCutPointsByMDL(int index,
|
---|
733 | Instances data) {
|
---|
734 |
|
---|
735 | // Sort instances
|
---|
736 | data.sort(data.attribute(index));
|
---|
737 |
|
---|
738 | // Find first instances that's missing
|
---|
739 | int firstMissing = data.numInstances();
|
---|
740 | for (int i = 0; i < data.numInstances(); i++) {
|
---|
741 | if (data.instance(i).isMissing(index)) {
|
---|
742 | firstMissing = i;
|
---|
743 | break;
|
---|
744 | }
|
---|
745 | }
|
---|
746 | m_CutPoints[index] = cutPointsForSubset(data, index, 0, firstMissing);
|
---|
747 | }
|
---|
748 |
|
---|
749 | /** Test using Kononenko's MDL criterion. */
|
---|
750 | private boolean KononenkosMDL(double[] priorCounts,
|
---|
751 | double[][] bestCounts,
|
---|
752 | double numInstances,
|
---|
753 | int numCutPoints) {
|
---|
754 |
|
---|
755 | double distPrior, instPrior, distAfter = 0, sum, instAfter = 0;
|
---|
756 | double before, after;
|
---|
757 | int numClassesTotal;
|
---|
758 |
|
---|
759 | // Number of classes occuring in the set
|
---|
760 | numClassesTotal = 0;
|
---|
761 | for (int i = 0; i < priorCounts.length; i++) {
|
---|
762 | if (priorCounts[i] > 0) {
|
---|
763 | numClassesTotal++;
|
---|
764 | }
|
---|
765 | }
|
---|
766 |
|
---|
767 | // Encode distribution prior to split
|
---|
768 | distPrior = SpecialFunctions.log2Binomial(numInstances
|
---|
769 | + numClassesTotal - 1,
|
---|
770 | numClassesTotal - 1);
|
---|
771 |
|
---|
772 | // Encode instances prior to split.
|
---|
773 | instPrior = SpecialFunctions.log2Multinomial(numInstances,
|
---|
774 | priorCounts);
|
---|
775 |
|
---|
776 | before = instPrior + distPrior;
|
---|
777 |
|
---|
778 | // Encode distributions and instances after split.
|
---|
779 | for (int i = 0; i < bestCounts.length; i++) {
|
---|
780 | sum = Utils.sum(bestCounts[i]);
|
---|
781 | distAfter += SpecialFunctions.log2Binomial(sum + numClassesTotal - 1,
|
---|
782 | numClassesTotal - 1);
|
---|
783 | instAfter += SpecialFunctions.log2Multinomial(sum,
|
---|
784 | bestCounts[i]);
|
---|
785 | }
|
---|
786 |
|
---|
787 | // Coding cost after split
|
---|
788 | after = Utils.log2(numCutPoints) + distAfter + instAfter;
|
---|
789 |
|
---|
790 | // Check if split is to be accepted
|
---|
791 | return (Utils.gr(before, after));
|
---|
792 | }
|
---|
793 |
|
---|
794 |
|
---|
795 | /** Test using Fayyad and Irani's MDL criterion. */
|
---|
796 | private boolean FayyadAndIranisMDL(double[] priorCounts,
|
---|
797 | double[][] bestCounts,
|
---|
798 | double numInstances,
|
---|
799 | int numCutPoints) {
|
---|
800 |
|
---|
801 | double priorEntropy, entropy, gain;
|
---|
802 | double entropyLeft, entropyRight, delta;
|
---|
803 | int numClassesTotal, numClassesRight, numClassesLeft;
|
---|
804 |
|
---|
805 | // Compute entropy before split.
|
---|
806 | priorEntropy = ContingencyTables.entropy(priorCounts);
|
---|
807 |
|
---|
808 | // Compute entropy after split.
|
---|
809 | entropy = ContingencyTables.entropyConditionedOnRows(bestCounts);
|
---|
810 |
|
---|
811 | // Compute information gain.
|
---|
812 | gain = priorEntropy - entropy;
|
---|
813 |
|
---|
814 | // Number of classes occuring in the set
|
---|
815 | numClassesTotal = 0;
|
---|
816 | for (int i = 0; i < priorCounts.length; i++) {
|
---|
817 | if (priorCounts[i] > 0) {
|
---|
818 | numClassesTotal++;
|
---|
819 | }
|
---|
820 | }
|
---|
821 |
|
---|
822 | // Number of classes occuring in the left subset
|
---|
823 | numClassesLeft = 0;
|
---|
824 | for (int i = 0; i < bestCounts[0].length; i++) {
|
---|
825 | if (bestCounts[0][i] > 0) {
|
---|
826 | numClassesLeft++;
|
---|
827 | }
|
---|
828 | }
|
---|
829 |
|
---|
830 | // Number of classes occuring in the right subset
|
---|
831 | numClassesRight = 0;
|
---|
832 | for (int i = 0; i < bestCounts[1].length; i++) {
|
---|
833 | if (bestCounts[1][i] > 0) {
|
---|
834 | numClassesRight++;
|
---|
835 | }
|
---|
836 | }
|
---|
837 |
|
---|
838 | // Entropy of the left and the right subsets
|
---|
839 | entropyLeft = ContingencyTables.entropy(bestCounts[0]);
|
---|
840 | entropyRight = ContingencyTables.entropy(bestCounts[1]);
|
---|
841 |
|
---|
842 | // Compute terms for MDL formula
|
---|
843 | delta = Utils.log2(Math.pow(3, numClassesTotal) - 2) -
|
---|
844 | (((double) numClassesTotal * priorEntropy) -
|
---|
845 | (numClassesRight * entropyRight) -
|
---|
846 | (numClassesLeft * entropyLeft));
|
---|
847 |
|
---|
848 | // Check if split is to be accepted
|
---|
849 | return (Utils.gr(gain, (Utils.log2(numCutPoints) + delta) /
|
---|
850 | (double)numInstances));
|
---|
851 | }
|
---|
852 |
|
---|
853 |
|
---|
854 | /** Selects cutpoints for sorted subset. */
|
---|
855 | private double[] cutPointsForSubset(Instances instances, int attIndex,
|
---|
856 | int first, int lastPlusOne) {
|
---|
857 |
|
---|
858 | double[][] counts, bestCounts;
|
---|
859 | double[] priorCounts, left, right, cutPoints;
|
---|
860 | double currentCutPoint = -Double.MAX_VALUE, bestCutPoint = -1,
|
---|
861 | currentEntropy, bestEntropy, priorEntropy, gain;
|
---|
862 | int bestIndex = -1, numInstances = 0, numCutPoints = 0;
|
---|
863 |
|
---|
864 | // Compute number of instances in set
|
---|
865 | if ((lastPlusOne - first) < 2) {
|
---|
866 | return null;
|
---|
867 | }
|
---|
868 |
|
---|
869 | // Compute class counts.
|
---|
870 | counts = new double[2][instances.numClasses()];
|
---|
871 | for (int i = first; i < lastPlusOne; i++) {
|
---|
872 | numInstances += instances.instance(i).weight();
|
---|
873 | counts[1][(int)instances.instance(i).classValue()] +=
|
---|
874 | instances.instance(i).weight();
|
---|
875 | }
|
---|
876 |
|
---|
877 | // Save prior counts
|
---|
878 | priorCounts = new double[instances.numClasses()];
|
---|
879 | System.arraycopy(counts[1], 0, priorCounts, 0,
|
---|
880 | instances.numClasses());
|
---|
881 |
|
---|
882 | // Entropy of the full set
|
---|
883 | priorEntropy = ContingencyTables.entropy(priorCounts);
|
---|
884 | bestEntropy = priorEntropy;
|
---|
885 |
|
---|
886 | // Find best entropy.
|
---|
887 | bestCounts = new double[2][instances.numClasses()];
|
---|
888 | for (int i = first; i < (lastPlusOne - 1); i++) {
|
---|
889 | counts[0][(int)instances.instance(i).classValue()] +=
|
---|
890 | instances.instance(i).weight();
|
---|
891 | counts[1][(int)instances.instance(i).classValue()] -=
|
---|
892 | instances.instance(i).weight();
|
---|
893 | if (Utils.sm(instances.instance(i).value(attIndex),
|
---|
894 | instances.instance(i + 1).value(attIndex))) {
|
---|
895 | currentCutPoint = instances.instance(i).value(attIndex); //+
|
---|
896 | //instances.instance(i + 1).value(attIndex)) / 2.0;
|
---|
897 | currentEntropy = ContingencyTables.entropyConditionedOnRows(counts);
|
---|
898 | if (Utils.sm(currentEntropy, bestEntropy)) {
|
---|
899 | bestCutPoint = currentCutPoint;
|
---|
900 | bestEntropy = currentEntropy;
|
---|
901 | bestIndex = i;
|
---|
902 | System.arraycopy(counts[0], 0,
|
---|
903 | bestCounts[0], 0, instances.numClasses());
|
---|
904 | System.arraycopy(counts[1], 0,
|
---|
905 | bestCounts[1], 0, instances.numClasses());
|
---|
906 | }
|
---|
907 | numCutPoints++;
|
---|
908 | }
|
---|
909 | }
|
---|
910 |
|
---|
911 | // Use worse encoding?
|
---|
912 | if (!m_UseBetterEncoding) {
|
---|
913 | numCutPoints = (lastPlusOne - first) - 1;
|
---|
914 | }
|
---|
915 |
|
---|
916 | // Checks if gain is zero
|
---|
917 | gain = priorEntropy - bestEntropy;
|
---|
918 | if (Utils.eq(gain, 0)) {
|
---|
919 | return null;
|
---|
920 | }
|
---|
921 |
|
---|
922 | // Check if split is to be accepted
|
---|
923 | if ((m_UseKononenko && KononenkosMDL(priorCounts, bestCounts,
|
---|
924 | numInstances, numCutPoints)) ||
|
---|
925 | (!m_UseKononenko && FayyadAndIranisMDL(priorCounts, bestCounts,
|
---|
926 | numInstances, numCutPoints))) {
|
---|
927 |
|
---|
928 | // Select split points for the left and right subsets
|
---|
929 | left = cutPointsForSubset(instances, attIndex, first, bestIndex + 1);
|
---|
930 | right = cutPointsForSubset(instances, attIndex,
|
---|
931 | bestIndex + 1, lastPlusOne);
|
---|
932 |
|
---|
933 | // Merge cutpoints and return them
|
---|
934 | if ((left == null) && (right) == null) {
|
---|
935 | cutPoints = new double[1];
|
---|
936 | cutPoints[0] = bestCutPoint;
|
---|
937 | } else if (right == null) {
|
---|
938 | cutPoints = new double[left.length + 1];
|
---|
939 | System.arraycopy(left, 0, cutPoints, 0, left.length);
|
---|
940 | cutPoints[left.length] = bestCutPoint;
|
---|
941 | } else if (left == null) {
|
---|
942 | cutPoints = new double[1 + right.length];
|
---|
943 | cutPoints[0] = bestCutPoint;
|
---|
944 | System.arraycopy(right, 0, cutPoints, 1, right.length);
|
---|
945 | } else {
|
---|
946 | cutPoints = new double[left.length + right.length + 1];
|
---|
947 | cutPoints = new double[left.length + right.length + 1];
|
---|
948 | System.arraycopy(left, 0, cutPoints, 0, left.length);
|
---|
949 | cutPoints[left.length] = bestCutPoint;
|
---|
950 | System.arraycopy(right, 0, cutPoints, left.length + 1, right.length);
|
---|
951 | }
|
---|
952 |
|
---|
953 | return cutPoints;
|
---|
954 | } else
|
---|
955 | return null;
|
---|
956 | }
|
---|
957 |
|
---|
958 | /**
|
---|
959 | * Set cutpoints for a single attribute.
|
---|
960 | *
|
---|
961 | * @param index the index of the attribute to set cutpoints for
|
---|
962 | */
|
---|
963 | protected void calculateCutPointsByEqualWidthBinning(int index) {
|
---|
964 |
|
---|
965 | // Scan for max and min values
|
---|
966 | double max = 0, min = 1, currentVal;
|
---|
967 | Instance currentInstance;
|
---|
968 | for(int i = 0; i < getInputFormat().numInstances(); i++) {
|
---|
969 | currentInstance = getInputFormat().instance(i);
|
---|
970 | if (!currentInstance.isMissing(index)) {
|
---|
971 | currentVal = currentInstance.value(index);
|
---|
972 | if (max < min) {
|
---|
973 | max = min = currentVal;
|
---|
974 | }
|
---|
975 | if (currentVal > max) {
|
---|
976 | max = currentVal;
|
---|
977 | }
|
---|
978 | if (currentVal < min) {
|
---|
979 | min = currentVal;
|
---|
980 | }
|
---|
981 | }
|
---|
982 | }
|
---|
983 | double binWidth = (max - min) / m_NumBins;
|
---|
984 | double [] cutPoints = null;
|
---|
985 | if ((m_NumBins > 1) && (binWidth > 0)) {
|
---|
986 | cutPoints = new double [m_NumBins - 1];
|
---|
987 | for(int i = 1; i < m_NumBins; i++) {
|
---|
988 | cutPoints[i - 1] = min + binWidth * i;
|
---|
989 | }
|
---|
990 | }
|
---|
991 | m_CutPoints[index] = cutPoints;
|
---|
992 | }
|
---|
993 |
|
---|
994 | /**
|
---|
995 | * Set cutpoints for a single attribute.
|
---|
996 | *
|
---|
997 | * @param index the index of the attribute to set cutpoints for
|
---|
998 | */
|
---|
999 | protected void calculateCutPointsByEqualFrequencyBinning(int index) {
|
---|
1000 |
|
---|
1001 | // Copy data so that it can be sorted
|
---|
1002 | Instances data = new Instances(getInputFormat());
|
---|
1003 |
|
---|
1004 | // Sort input data
|
---|
1005 | data.sort(index);
|
---|
1006 |
|
---|
1007 | // Compute weight of instances without missing values
|
---|
1008 | double sumOfWeights = 0;
|
---|
1009 | for (int i = 0; i < data.numInstances(); i++) {
|
---|
1010 | if (data.instance(i).isMissing(index)) {
|
---|
1011 | break;
|
---|
1012 | } else {
|
---|
1013 | sumOfWeights += data.instance(i).weight();
|
---|
1014 | }
|
---|
1015 | }
|
---|
1016 | double freq = sumOfWeights / m_NumBins;
|
---|
1017 |
|
---|
1018 | // Compute break points
|
---|
1019 | double[] cutPoints = new double[m_NumBins - 1];
|
---|
1020 | double counter = 0;
|
---|
1021 | int cpindex = 0;
|
---|
1022 | for (int i = 0; i < data.numInstances() - 1; i++) {
|
---|
1023 |
|
---|
1024 | // Stop if value missing
|
---|
1025 | if (data.instance(i).isMissing(index)) {
|
---|
1026 | break;
|
---|
1027 | }
|
---|
1028 | counter += data.instance(i).weight();
|
---|
1029 |
|
---|
1030 | // Do we have a potential breakpoint?
|
---|
1031 | if (data.instance(i).value(index) <
|
---|
1032 | data.instance(i + 1).value(index)) {
|
---|
1033 | if (counter >= freq) {
|
---|
1034 | cutPoints[cpindex] = (data.instance(i).value(index) +
|
---|
1035 | data.instance(i + 1).value(index)) / 2;
|
---|
1036 | cpindex++;
|
---|
1037 | counter = counter - freq;
|
---|
1038 | }
|
---|
1039 | }
|
---|
1040 | }
|
---|
1041 |
|
---|
1042 | // Did we find any cutpoints?
|
---|
1043 | if (cpindex == 0) {
|
---|
1044 | m_CutPoints[index] = null;
|
---|
1045 | } else {
|
---|
1046 | double[] cp = new double[cpindex];
|
---|
1047 | for (int i = 0; i < cpindex; i++) {
|
---|
1048 | cp[i] = cutPoints[i];
|
---|
1049 | }
|
---|
1050 | m_CutPoints[index] = cp;
|
---|
1051 | }
|
---|
1052 | }
|
---|
1053 |
|
---|
1054 | /**
|
---|
1055 | * Optimizes the number of bins using leave-one-out cross-validation.
|
---|
1056 | *
|
---|
1057 | * @param index the attribute index
|
---|
1058 | */
|
---|
1059 | protected void findNumBins(int index) {
|
---|
1060 |
|
---|
1061 | double min = Double.MAX_VALUE, max = -Double.MIN_VALUE, binWidth = 0,
|
---|
1062 | entropy, bestEntropy = Double.MAX_VALUE, currentVal;
|
---|
1063 | double[] distribution;
|
---|
1064 | int bestNumBins = 1;
|
---|
1065 | Instance currentInstance;
|
---|
1066 |
|
---|
1067 | // Find minimum and maximum
|
---|
1068 | for (int i = 0; i < getInputFormat().numInstances(); i++) {
|
---|
1069 | currentInstance = getInputFormat().instance(i);
|
---|
1070 | if (!currentInstance.isMissing(index)) {
|
---|
1071 | currentVal = currentInstance.value(index);
|
---|
1072 | if (currentVal > max) {
|
---|
1073 | max = currentVal;
|
---|
1074 | }
|
---|
1075 | if (currentVal < min) {
|
---|
1076 | min = currentVal;
|
---|
1077 | }
|
---|
1078 | }
|
---|
1079 | }
|
---|
1080 |
|
---|
1081 | // Find best number of bins
|
---|
1082 | for (int i = 0; i < m_NumBins; i++) {
|
---|
1083 | distribution = new double[i + 1];
|
---|
1084 | binWidth = (max - min) / (i + 1);
|
---|
1085 |
|
---|
1086 | // Compute distribution
|
---|
1087 | for (int j = 0; j < getInputFormat().numInstances(); j++) {
|
---|
1088 | currentInstance = getInputFormat().instance(j);
|
---|
1089 | if (!currentInstance.isMissing(index)) {
|
---|
1090 | for (int k = 0; k < i + 1; k++) {
|
---|
1091 | if (currentInstance.value(index) <=
|
---|
1092 | (min + (((double)k + 1) * binWidth))) {
|
---|
1093 | distribution[k] += currentInstance.weight();
|
---|
1094 | break;
|
---|
1095 | }
|
---|
1096 | }
|
---|
1097 | }
|
---|
1098 | }
|
---|
1099 |
|
---|
1100 | // Compute cross-validated entropy
|
---|
1101 | entropy = 0;
|
---|
1102 | for (int k = 0; k < i + 1; k++) {
|
---|
1103 | if (distribution[k] < 2) {
|
---|
1104 | entropy = Double.MAX_VALUE;
|
---|
1105 | break;
|
---|
1106 | }
|
---|
1107 | entropy -= distribution[k] * Math.log((distribution[k] - 1) /
|
---|
1108 | binWidth);
|
---|
1109 | }
|
---|
1110 |
|
---|
1111 | // Best entropy so far?
|
---|
1112 | if (entropy < bestEntropy) {
|
---|
1113 | bestEntropy = entropy;
|
---|
1114 | bestNumBins = i + 1;
|
---|
1115 | }
|
---|
1116 | }
|
---|
1117 |
|
---|
1118 | // Compute cut points
|
---|
1119 | double [] cutPoints = null;
|
---|
1120 | if ((bestNumBins > 1) && (binWidth > 0)) {
|
---|
1121 | cutPoints = new double [bestNumBins - 1];
|
---|
1122 | for(int i = 1; i < bestNumBins; i++) {
|
---|
1123 | cutPoints[i - 1] = min + binWidth * i;
|
---|
1124 | }
|
---|
1125 | }
|
---|
1126 | m_CutPoints[index] = cutPoints;
|
---|
1127 | }
|
---|
1128 |
|
---|
1129 | /**
|
---|
1130 | * Set the output format. Takes the currently defined cutpoints and
|
---|
1131 | * m_InputFormat and calls setOutputFormat(Instances) appropriately.
|
---|
1132 | */
|
---|
1133 | protected void setOutputFormat() {
|
---|
1134 |
|
---|
1135 | if (m_CutPoints == null) {
|
---|
1136 | setOutputFormat(null);
|
---|
1137 | return;
|
---|
1138 | }
|
---|
1139 | FastVector attributes = new FastVector(getInputFormat().numAttributes());
|
---|
1140 | int classIndex = getInputFormat().classIndex();
|
---|
1141 | for(int i = 0; i < getInputFormat().numAttributes(); i++) {
|
---|
1142 | if ((m_DiscretizeCols.isInRange(i))
|
---|
1143 | && (getInputFormat().attribute(i).isNumeric())) {
|
---|
1144 | if (!m_MakeBinary) {
|
---|
1145 | FastVector attribValues = new FastVector(1);
|
---|
1146 | if (m_CutPoints[i] == null) {
|
---|
1147 | attribValues.addElement("'All'");
|
---|
1148 | } else {
|
---|
1149 | for(int j = 0; j <= m_CutPoints[i].length; j++) {
|
---|
1150 | if (j == 0) {
|
---|
1151 | attribValues.addElement("'(-inf-"
|
---|
1152 | + Utils.doubleToString(m_CutPoints[i][j], 6) + "]'");
|
---|
1153 | } else if (j == m_CutPoints[i].length) {
|
---|
1154 | attribValues.addElement("'("
|
---|
1155 | + Utils.doubleToString(m_CutPoints[i][j - 1], 6)
|
---|
1156 | + "-inf)'");
|
---|
1157 | } else {
|
---|
1158 | attribValues.addElement("'("
|
---|
1159 | + Utils.doubleToString(m_CutPoints[i][j - 1], 6) + "-"
|
---|
1160 | + Utils.doubleToString(m_CutPoints[i][j], 6) + "]'");
|
---|
1161 | }
|
---|
1162 | }
|
---|
1163 | }
|
---|
1164 | attributes.addElement(new Attribute(getInputFormat().
|
---|
1165 | attribute(i).name(),
|
---|
1166 | attribValues));
|
---|
1167 | } else {
|
---|
1168 | if (m_CutPoints[i] == null) {
|
---|
1169 | FastVector attribValues = new FastVector(1);
|
---|
1170 | attribValues.addElement("'All'");
|
---|
1171 | attributes.addElement(new Attribute(getInputFormat().
|
---|
1172 | attribute(i).name(),
|
---|
1173 | attribValues));
|
---|
1174 | } else {
|
---|
1175 | if (i < getInputFormat().classIndex()) {
|
---|
1176 | classIndex += m_CutPoints[i].length - 1;
|
---|
1177 | }
|
---|
1178 | for(int j = 0; j < m_CutPoints[i].length; j++) {
|
---|
1179 | FastVector attribValues = new FastVector(2);
|
---|
1180 | attribValues.addElement("'(-inf-"
|
---|
1181 | + Utils.doubleToString(m_CutPoints[i][j], 6) + "]'");
|
---|
1182 | attribValues.addElement("'("
|
---|
1183 | + Utils.doubleToString(m_CutPoints[i][j], 6) + "-inf)'");
|
---|
1184 | attributes.addElement(new Attribute(getInputFormat().
|
---|
1185 | attribute(i).name(),
|
---|
1186 | attribValues));
|
---|
1187 | }
|
---|
1188 | }
|
---|
1189 | }
|
---|
1190 | } else {
|
---|
1191 | attributes.addElement(getInputFormat().attribute(i).copy());
|
---|
1192 | }
|
---|
1193 | }
|
---|
1194 | Instances outputFormat =
|
---|
1195 | new Instances(getInputFormat().relationName(), attributes, 0);
|
---|
1196 | outputFormat.setClassIndex(classIndex);
|
---|
1197 | setOutputFormat(outputFormat);
|
---|
1198 | }
|
---|
1199 |
|
---|
1200 | /**
|
---|
1201 | * Convert a single instance over. The converted instance is added to
|
---|
1202 | * the end of the output queue.
|
---|
1203 | *
|
---|
1204 | * @param instance the instance to convert
|
---|
1205 | */
|
---|
1206 | protected void convertInstance(Instance instance) {
|
---|
1207 |
|
---|
1208 | int index = 0;
|
---|
1209 | double [] vals = new double [outputFormatPeek().numAttributes()];
|
---|
1210 | // Copy and convert the values
|
---|
1211 | for(int i = 0; i < getInputFormat().numAttributes(); i++) {
|
---|
1212 | if (m_DiscretizeCols.isInRange(i) &&
|
---|
1213 | getInputFormat().attribute(i).isNumeric()) {
|
---|
1214 | int j;
|
---|
1215 | double currentVal = instance.value(i);
|
---|
1216 | if (m_CutPoints[i] == null) {
|
---|
1217 | if (instance.isMissing(i)) {
|
---|
1218 | vals[index] = Instance.missingValue();
|
---|
1219 | } else {
|
---|
1220 | vals[index] = 0;
|
---|
1221 | }
|
---|
1222 | index++;
|
---|
1223 | } else {
|
---|
1224 | if (!m_MakeBinary) {
|
---|
1225 | if (instance.isMissing(i)) {
|
---|
1226 | vals[index] = Instance.missingValue();
|
---|
1227 | } else {
|
---|
1228 | for (j = 0; j < m_CutPoints[i].length; j++) {
|
---|
1229 | if (currentVal <= m_CutPoints[i][j]) {
|
---|
1230 | break;
|
---|
1231 | }
|
---|
1232 | }
|
---|
1233 | vals[index] = j;
|
---|
1234 | }
|
---|
1235 | index++;
|
---|
1236 | } else {
|
---|
1237 | for (j = 0; j < m_CutPoints[i].length; j++) {
|
---|
1238 | if (instance.isMissing(i)) {
|
---|
1239 | vals[index] = Instance.missingValue();
|
---|
1240 | } else if (currentVal <= m_CutPoints[i][j]) {
|
---|
1241 | vals[index] = 0;
|
---|
1242 | } else {
|
---|
1243 | vals[index] = 1;
|
---|
1244 | }
|
---|
1245 | index++;
|
---|
1246 | }
|
---|
1247 | }
|
---|
1248 | }
|
---|
1249 | } else {
|
---|
1250 | vals[index] = instance.value(i);
|
---|
1251 | index++;
|
---|
1252 | }
|
---|
1253 | }
|
---|
1254 |
|
---|
1255 | Instance inst = null;
|
---|
1256 | if (instance instanceof SparseInstance) {
|
---|
1257 | inst = new SparseInstance(instance.weight(), vals);
|
---|
1258 | } else {
|
---|
1259 | inst = new Instance(instance.weight(), vals);
|
---|
1260 | }
|
---|
1261 | copyStringValues(inst, false, instance.dataset(), getInputStringIndex(),
|
---|
1262 | getOutputFormat(), getOutputStringIndex());
|
---|
1263 | inst.setDataset(getOutputFormat());
|
---|
1264 | push(inst);
|
---|
1265 | }
|
---|
1266 |
|
---|
1267 | /**
|
---|
1268 | * Main method for testing this class.
|
---|
1269 | *
|
---|
1270 | * @param argv should contain arguments to the filter: use -h for help
|
---|
1271 | */
|
---|
1272 | public static void main(String [] argv) {
|
---|
1273 |
|
---|
1274 | try {
|
---|
1275 | if (Utils.getFlag('b', argv)) {
|
---|
1276 | Filter.batchFilterFile(new DiscretizeFilter(), argv);
|
---|
1277 | } else {
|
---|
1278 | Filter.filterFile(new DiscretizeFilter(), argv);
|
---|
1279 | }
|
---|
1280 | } catch (Exception ex) {
|
---|
1281 | System.out.println(ex.getMessage());
|
---|
1282 | }
|
---|
1283 | }
|
---|
1284 | }
|
---|
1285 |
|
---|
1286 |
|
---|
1287 |
|
---|
1288 |
|
---|
1289 |
|
---|
1290 |
|
---|
1291 |
|
---|
1292 |
|
---|