1 | package org.greenstone.gsdl3.gs3build.indexers;
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2 |
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3 | import java.util.List;
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4 | import java.util.ArrayList;
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5 | import java.util.Iterator;
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6 |
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7 | import java.io.File;
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8 | import java.io.InputStream;
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9 | import java.io.OutputStream;
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10 | import java.io.IOException;
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11 |
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12 | import org.w3c.dom.*;
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13 |
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14 | import org.greenstone.gsdl3.gs3build.doctypes.DocumentID;
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15 | import org.greenstone.gsdl3.gs3build.doctypes.DocumentInterface;
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16 | import org.greenstone.gsdl3.gs3build.doctypes.HTMLDocument;
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17 | import org.greenstone.gsdl3.gs3build.metadata.*;
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18 | import org.greenstone.gsdl3.gs3build.xpointer.XPointer;
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19 |
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20 | public class MGIndexer implements IndexerInterface
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21 | {
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22 | int pass;
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23 | int documentSeqNo;
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24 | int sectionSeqNo;
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25 | boolean firstDocument;
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26 | String outputDirectory;
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27 | InputStream indexerFeedback;
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28 | InputStream indexerErrors;
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29 | OutputStream indexerTextfeed;
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30 | Process mg_passes;
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31 | File textDirectory;
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32 | File indexDirectory;
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33 | String indexStem;
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34 | String textStem;
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35 | List indexes;
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36 | String indexName;
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37 | String level;
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38 | String field;
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39 |
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40 | static final char END_OF_DOCUMENT = (char) 2;
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41 | static final char END_OF_SECTION = (char) 3;
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42 | static final char END_OF_STREAM = (char) 4;
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43 |
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44 | class MGIndex
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45 | { String level;
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46 | String field;
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47 |
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48 | public MGIndex(String level, String field)
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49 | { this.level = level;
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50 | this.field = field;
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51 | }
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52 |
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53 | public MGIndex(String indexLabel)
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54 | { int colonAt = indexLabel.indexOf(':');
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55 |
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56 | if (colonAt >= 0)
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57 | { field = indexLabel.substring(colonAt+1);
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58 | level = indexLabel.substring(0, colonAt);
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59 | }
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60 | }
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61 |
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62 | public String getLevel()
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63 | { return this.level;
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64 | }
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65 |
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66 | public String getField()
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67 | { return this.field;
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68 | }
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69 | }
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70 |
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71 | public MGIndexer()
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72 | { this.indexes = new ArrayList();
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73 | }
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74 |
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75 | private String getIndexDirectory(String level, String field)
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76 | { StringBuffer directory = new StringBuffer();
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77 | directory.append(Character.toLowerCase((char) level.charAt(0)));
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78 |
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79 | int c, w;
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80 | w = 0;
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81 | c = 0;
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82 | while (c < field.length() && w < 2) {
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83 | char ch = field.charAt(c);
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84 |
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85 | ch = Character.toLowerCase(ch);
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86 | if (Character.isLetter(ch)) {
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87 | if (ch != 'a' && ch != 'e' && ch != 'i' &&
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88 | ch != 'o' && ch != 'u') {
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89 | directory.append(ch);
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90 | w++;
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91 | }
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92 | }
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93 | c ++;
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94 | }
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95 | return directory.toString();
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96 | }
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97 |
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98 | /**
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99 | * The output directory should be (collection)/building/text/ for
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100 | * normal Greenstone builds.
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101 | *
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102 | * @param <code>String</code> the label to configure
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103 | * @param <code>String</code> the value...
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104 | */
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105 | public boolean configure(String label, String value)
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106 | {
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107 | if (label.equals(IndexerManager.outputDir)) {
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108 | this.outputDirectory = value;
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109 | this.textStem = value + "/text/index";
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110 | this.pass = 0;
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111 |
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112 | // attempt to ensure that the text subdirectory exists
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113 | this.textDirectory = new File(outputDirectory, "text");
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114 | if (!textDirectory.exists()) {
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115 | if (!textDirectory.mkdir()) {
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116 | return false;
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117 | }
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118 | }
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119 | else if (!textDirectory.isDirectory()) {
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120 | return false;
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121 | }
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122 |
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123 | // Sign to the user which mg directory is being used...
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124 | System.out.println("Output MG directory is " + this.textStem);
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125 | }
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126 | else if (label.equals(IndexerInterface.GS2_INDEX_LABEL)) {
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127 | this.indexes.add(new MGIndex(value));
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128 | }
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129 |
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130 | return true;
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131 | }
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132 |
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133 | public boolean addIndex(String level, String field)
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134 | {
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135 | MGIndex index = new MGIndex(level, field);
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136 | this.indexes.add(index);
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137 | return true;
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138 | }
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139 |
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140 | private Node recurseDOM(DocumentInterface metsDoc, Node node,
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141 | AbstractStructure structure, StringBuffer textBuffer,
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142 | StringBuffer extraBuffer, String indexName,
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143 | String namespace, String field)
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144 | {
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145 | // send out the ctrl-c...if this is
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146 | if (structure.getStructureType().equals(METSDivision.DIVISION_TYPE)) {
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147 | if ((indexName != null) && indexName.startsWith("s")) {
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148 | METSDivision division = (METSDivision) structure;
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149 |
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150 | // get the division metadata block
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151 | METSDescriptive descriptive;
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152 | String metadataId = division.getDefaultMetadataReference();
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153 | if (metadataId == null) {
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154 | descriptive = metsDoc.getDocumentMetadata().createDescriptive(division.getLabel());
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155 | division.addMetadataReference(descriptive.getID());
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156 | }
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157 | else {
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158 | // Get the descriptive item...
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159 | descriptive = metsDoc.getDocumentMetadata().getDescriptiveById(metadataId);
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160 | }
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161 |
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162 | descriptive.setMetadata("gsdl3", "mgseqno", indexName + "." + Integer.toString(this.sectionSeqNo));
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163 | metsDoc.setModified(true);
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164 | // System.out.println("Assigning " + this.sectionSeqNo + " to " + metsDoc.getID() + " " + division.getLabel());
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165 | }
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166 |
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167 | // append an 'end of section' marker
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168 | textBuffer.append(END_OF_SECTION);
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169 | this.sectionSeqNo ++;
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170 |
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171 | // for document-level indexes, always append an 'end of document' tag at the
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172 | // end of the document for each section. Otherwise, each section is followed
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173 | // by an end of document character. This ensures that all indexes use the
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174 | // same document numbering...
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175 | if (this.level == null ||
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176 | this.level.equals(IndexerInterface.DOCUMENT_LEVEL)) {
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177 | extraBuffer.append(END_OF_DOCUMENT);
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178 | }
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179 | else {
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180 | textBuffer.append(END_OF_DOCUMENT);
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181 | this.documentSeqNo ++;
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182 | }
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183 |
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184 | // produce the body here for metadata output of divisions - in the case of
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185 | // text output, that will happen below...
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186 | if (!this.field.equals("text"))
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187 | { METSDescriptive descriptive;
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188 |
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189 | METSDivision division = (METSDivision) structure;
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190 |
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191 | String metadataId = division.getDefaultMetadataReference();
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192 |
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193 | descriptive = metsDoc.getDocumentMetadata().getDescriptiveById(metadataId);
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194 | if (descriptive != null) {
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195 | List values = descriptive.getMetadata(namespace, field);
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196 |
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197 | if (values != null) {
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198 | Iterator valueIter = values.iterator();
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199 | while (valueIter.hasNext()) {
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200 | String value = valueIter.next().toString();
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201 |
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202 | textBuffer.append(value);
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203 | if (valueIter.hasNext()) {
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204 | textBuffer.append(END_OF_SECTION);
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205 | }
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206 | }
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207 | }
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208 | }
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209 | }
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210 | }
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211 |
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212 | // go through our children as required...
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213 | Iterator children = structure.getChildIterator();
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214 | while (children.hasNext()) {
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215 | AbstractStructure child = (AbstractStructure) children.next();
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216 |
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217 | // get xpointer for child
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218 | // get start position node
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219 | Node startNode = ((HTMLDocument) metsDoc).getSectionStartNode((METSDivision) child);
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220 |
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221 | // while this node isn't the child's start node, produce the HTML node text, if
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222 | // in text field mode...
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223 | if (field.equals("text")) {
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224 | while (node != startNode) {
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225 | XPointer.printNode(node, textBuffer, false);
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226 |
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227 | // print buffer to node
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228 | node = XPointer.getNextNode(node, (field.equals("text") ? textBuffer : null));
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229 | }
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230 | }
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231 |
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232 | // recurse to child
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233 | node = this.recurseDOM(metsDoc, node, child, textBuffer, extraBuffer, indexName, namespace, field);
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234 | }
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235 |
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236 | // close a document - the actual closing \B will be done by the main
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237 | // loop, so only a required \C is printed here...
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238 | if (structure.getStructureType().equals(METSStructure.STRUCTURE_TYPE)) {
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239 | while (node != null) {
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240 | if (field.equals("text")) {
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241 | XPointer.printNode(node, textBuffer, false);
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242 | }
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243 | node = XPointer.getNextNode(node, (field.equals("text") ? textBuffer : null));
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244 | }
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245 | /*
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246 | textBuffer.append(END_OF_SECTION);
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247 | this.sectionSeqNo ++;
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248 | */
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249 | }
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250 | return node;
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251 | }
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252 |
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253 | private String prepareDOM(DocumentInterface metsDoc, Document document, METSStructure structure,
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254 | String indexName, String namespace, String field)
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255 | { StringBuffer extraBuffer = new StringBuffer();
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256 | Node node = document.getDocumentElement();
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257 | StringBuffer textBuffer = new StringBuffer();
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258 |
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259 | this.recurseDOM(metsDoc, node, structure, textBuffer, extraBuffer, indexName, namespace, field);
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260 | textBuffer.append(extraBuffer.toString());
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261 | return textBuffer.toString();
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262 | }
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263 |
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264 | /**
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265 | * Index a single document; the document interface can be used to extract individual
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266 | * metadata items etc. as required or desired and index those instead or as well as
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267 | * the body text of the document.
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268 | */
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269 | public boolean indexDocument(DocumentID docID, DocumentInterface document)
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270 | {
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271 | if (!this.firstDocument)
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272 | { // Send a 'CTRL-B' before the document itself
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273 | try {
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274 | this.indexerTextfeed.write(END_OF_DOCUMENT);
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275 | }
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276 | catch (IOException ex)
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277 | { System.out.println("Bad output on end of document" + ex);
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278 | ex.printStackTrace();
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279 | return false;
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280 | }
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281 | }
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282 | String docText = null;
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283 |
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284 | int startSeqNo = this.sectionSeqNo;
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285 | this.sectionSeqNo ++;
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286 |
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287 | Document domDocument = document.getDOMDocument();
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288 | if (domDocument != null) {
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289 | METSStructure sections = document.getDocumentStructure().getStructure("Section");
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290 | if (sections != null) {
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291 | docText = this.prepareDOM(document, domDocument, sections, this.indexName, "gsdl3", this.field);
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292 | // System.out.println(docText);
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293 | }
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294 | }
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295 | if (docText == null) {
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296 | if (this.field.equals("text")) {
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297 | docText = Character.toString(END_OF_DOCUMENT) + Character.toString(END_OF_SECTION) +
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298 | document.getDocumentText();
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299 | }
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300 | else {
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301 | StringBuffer textBuffer = new StringBuffer();
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302 | textBuffer.append(END_OF_DOCUMENT);
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303 | textBuffer.append(END_OF_SECTION);
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304 | List values = document.getDocumentMetadataItem("gsdl3", this.field);
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305 | if (values != null) {
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306 | Iterator valueIter = values.iterator();
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307 | while (valueIter.hasNext()) {
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308 | String value = valueIter.next().toString();
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309 |
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310 | textBuffer.append(value);
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311 | if (valueIter.hasNext()) {
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312 | textBuffer.append(END_OF_SECTION);
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313 | // sectionSeqNo ++;
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314 | }
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315 | }
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316 | }
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317 | else {
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318 | textBuffer.append("No data");
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319 | }
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320 | docText = textBuffer.toString();
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321 | }
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322 | sectionSeqNo ++;
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323 | }
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324 |
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325 | /* if (this.pass == 0) {
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326 | System.err.println(docText);
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327 | }
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328 | */
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329 |
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330 | byte [] bytes = docText.getBytes();
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331 | int pos = 0, end = bytes.length;
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332 |
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333 | try {
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334 | while (pos < end) {
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335 | this.indexerTextfeed.write(bytes, pos, (end - pos > 512 ? 512 : end - pos));
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336 | pos = pos + 512;
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337 |
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338 | try {
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339 | while (this.indexerFeedback.available() > 0)
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340 | { byte b[] = new byte[this.indexerFeedback.available()];
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341 | System.out.println("Feedback of " + this.indexerFeedback.available());
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342 | this.indexerFeedback.read(b);
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343 | System.out.println(b);
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344 | }
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345 | }
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346 | catch (IOException ex)
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347 | { System.out.println(ex);
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348 | }
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349 |
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350 |
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351 | try {
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352 | while (this.indexerErrors.available() > 0)
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353 | { byte b[] = new byte[this.indexerErrors.available()];
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354 | System.out.println("Feedback of " + this.indexerErrors.available());
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355 | this.indexerErrors.read(b);
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356 | System.out.println(new String(b));
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357 | }
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358 | }
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359 | catch (IOException ex)
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360 | { System.out.println(ex);
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361 | }
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362 | }
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363 | }
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364 | catch (IOException ex)
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365 | { System.out.println("Bad output during document write " + ex + " " + pos + " " + end);
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366 | ex.printStackTrace();
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367 | return false;
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368 | }
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369 |
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370 | // remember that we're not on the first document, assign the sequence number
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371 | // on the first pass only, and increment the sequence number.
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372 | this.firstDocument = false;
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373 | if (this.pass == 0) {
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374 | document.addDocumentMetadata("gsdl3", "mgseqno", "dtx."+Integer.toString(startSeqNo));
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375 | //System.out.println("Assigning " + startSeqNo + " to " + document.getID());
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376 | }
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377 | this.documentSeqNo += 1;
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378 |
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379 | try {
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380 | while (this.indexerErrors.available() > 0)
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381 | { char c = (char) this.indexerErrors.read();
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382 | System.out.println(c);
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383 | }
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384 | while (this.indexerFeedback.available() > 0)
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385 | { byte b[] = new byte[this.indexerFeedback.available()];
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386 | System.out.println("Feedback of " + this.indexerFeedback.available());
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387 | this.indexerFeedback.read(b);
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388 | }
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389 | }
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390 | catch (IOException ex)
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391 | {
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392 | }
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393 | return true;
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394 | }
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395 |
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396 | /**
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397 | * Initialise the pass: open required files, check status
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398 | */
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399 | public boolean startPass(int passNumber)
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400 | {
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401 | this.pass = passNumber;
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402 | this.firstDocument = true;
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403 | this.documentSeqNo = 1;
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404 | this.sectionSeqNo = 1;
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405 |
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406 | int indexNo = (this.pass - 2) / 2;
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407 | if (this.pass >= 2) {
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408 | MGIndex index = (MGIndex) this.indexes.get(indexNo);
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409 |
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410 | // attempt to ensure that the text subdirectory exists
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411 | this.indexDirectory = new File(outputDirectory, this.getIndexDirectory(index.getLevel(), index.getField()));
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412 | if (!indexDirectory.exists()) {
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413 | if (!indexDirectory.mkdir()) {
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414 | return false;
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415 | }
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416 | }
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417 | else if (!indexDirectory.isDirectory()) {
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418 | return false;
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419 | }
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420 |
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421 | this.level = index.getLevel();
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422 | this.field = index.getField();
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423 | this.indexName = this.getIndexDirectory(index.getLevel(), index.getField());
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424 | this.indexStem = this.outputDirectory + File.separatorChar +
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425 | this.indexName + File.separatorChar + "index"; // TODO: modify for index
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426 | if (this.pass % 2 == 1) {
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427 | this.indexName = null;
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428 | }
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429 | }
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430 | else {
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431 | this.field = "text";
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432 | this.level = "section";
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433 | this.indexName = null;
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434 | }
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435 | System.out.println("level is " + this.level);
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436 | System.out.println("field is " + this.field);
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437 | System.out.println("index name is " + this.indexName);
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438 |
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439 | // get the parameters for this execution of mg_passes
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440 | String pathParams = "-f index -d " + (this.pass < 2 ? this.textDirectory.toString() : this.indexDirectory.toString());
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441 |
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442 | int mgPass = this.pass < 2 ? this.pass : ((this.pass % 2) + 2);
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443 |
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444 | try {
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445 | switch (mgPass) {
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446 | case 0:
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447 | mg_passes = Runtime.getRuntime().exec("mg_passes " + pathParams + " -b 100000 -T1");
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448 | break;
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449 |
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450 | case 1:
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451 | mg_passes = Runtime.getRuntime().exec("mg_passes " + pathParams +" -b 100000 -T2");
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452 | break;
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453 |
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454 | case 2:
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455 | mg_passes = Runtime.getRuntime().exec("mg_passes " + pathParams + " -b 100000 -2 -m 32 -s 0 -G -t 10 -N1");
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456 | break;
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457 |
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458 | case 3:
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459 | Process p = Runtime.getRuntime().exec("mg_perf_hash_build -f index -d " + this.indexDirectory.toString());
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460 | p.waitFor();
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461 | if (p.exitValue() == 0) {
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462 | System.out.println("Perfect hashes completed");
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463 | }
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464 |
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465 | mg_passes = Runtime.getRuntime().exec("mg_passes " + pathParams +" -b 100000 -2 -c 3 -G -t 10 -N2");
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466 | break;
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467 | }
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468 |
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469 | this.indexerFeedback = mg_passes.getInputStream();
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470 | this.indexerErrors = mg_passes.getErrorStream();
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471 | this.indexerTextfeed = mg_passes.getOutputStream();
|
---|
472 | }
|
---|
473 | catch (IOException ex)
|
---|
474 | { System.out.println(ex);
|
---|
475 | ex.printStackTrace();
|
---|
476 | return false;
|
---|
477 | }
|
---|
478 | catch (InterruptedException ex)
|
---|
479 | { System.out.println(ex);
|
---|
480 | ex.printStackTrace();
|
---|
481 | return false;
|
---|
482 | }
|
---|
483 | System.out.println("Pass " + this.pass);
|
---|
484 | return true;
|
---|
485 | }
|
---|
486 |
|
---|
487 | /**
|
---|
488 | * Complete a pass - reset file counters, close files, etc.
|
---|
489 | */
|
---|
490 | public boolean endPass(int passNumber)
|
---|
491 | { Process p;
|
---|
492 |
|
---|
493 | try {
|
---|
494 | this.indexerTextfeed.write(END_OF_DOCUMENT);
|
---|
495 | this.indexerTextfeed.write(END_OF_STREAM);
|
---|
496 | while (this.indexerErrors.available() > 0)
|
---|
497 | { char c = (char) this.indexerErrors.read();
|
---|
498 | System.out.print(c);
|
---|
499 | }
|
---|
500 | while (this.indexerFeedback.available() > 0)
|
---|
501 | { byte b[] = new byte[this.indexerFeedback.available()];
|
---|
502 | System.out.print("Feedback of " + this.indexerFeedback.available());
|
---|
503 | this.indexerFeedback.read(b);
|
---|
504 | }
|
---|
505 |
|
---|
506 | this.indexerTextfeed.close();
|
---|
507 | Thread.sleep(1000);
|
---|
508 | this.mg_passes.waitFor();
|
---|
509 | }
|
---|
510 | catch (IOException ex)
|
---|
511 | { System.out.println(ex);
|
---|
512 | }
|
---|
513 | catch (InterruptedException ex)
|
---|
514 | { System.out.println(ex);
|
---|
515 | }
|
---|
516 | System.out.println("Pass " + this.pass + " completed with " + this.mg_passes.exitValue());
|
---|
517 |
|
---|
518 | int mgPass = this.pass < 2 ? this.pass : ((this.pass % 2) + 2);
|
---|
519 |
|
---|
520 | try {
|
---|
521 | switch (mgPass)
|
---|
522 | {
|
---|
523 | case 0:
|
---|
524 | System.out.println("Compressing dictionary");
|
---|
525 | p = Runtime.getRuntime().exec("mg_compression_dict -f index -d " + this.textDirectory.toString() + " -S -H -2 -k 5120");
|
---|
526 | p.waitFor();
|
---|
527 | if (p.exitValue() != 0) {
|
---|
528 | System.out.println("Error from mg_compression_dict: " + p.exitValue());
|
---|
529 | }
|
---|
530 | else {
|
---|
531 | System.out.println("Compressed dictionary successfully written");
|
---|
532 | }
|
---|
533 | break;
|
---|
534 |
|
---|
535 | case 3:
|
---|
536 | System.out.println("Writing weights file");
|
---|
537 | p = Runtime.getRuntime().exec("mg_weights_build -f " + this.indexStem + " -t " + this.textStem + " -d /");
|
---|
538 | p.waitFor();
|
---|
539 | if (p.exitValue() == 0) {
|
---|
540 | System.out.println("Weights file successfully written");
|
---|
541 | }
|
---|
542 | else {
|
---|
543 | System.out.println("Unable to create weights file " + "mg_weights_build -f " + this.indexStem + " -t " + this.textStem + " -d /");
|
---|
544 | }
|
---|
545 |
|
---|
546 | p = Runtime.getRuntime().exec("mg_invf_dict -f index -d " + this.indexDirectory.toString());
|
---|
547 | p.waitFor();
|
---|
548 | if (p.exitValue() == 0) {
|
---|
549 | System.out.println("Inverted dictionary file successfully written");
|
---|
550 | }
|
---|
551 | else {
|
---|
552 | System.out.println("Unable to create inverted dictionary file");
|
---|
553 | }
|
---|
554 |
|
---|
555 | p = Runtime.getRuntime().exec("mg_stem_idx -b 4096 -s1 -f index -d " + this.indexDirectory.toString());
|
---|
556 | p.waitFor();
|
---|
557 | if (p.exitValue() == 0) {
|
---|
558 | System.out.println("Stemmed index successfully written");
|
---|
559 | }
|
---|
560 | else {
|
---|
561 | System.out.println("Unable to create stemmed index");
|
---|
562 | }
|
---|
563 |
|
---|
564 | p = Runtime.getRuntime().exec("mg_stem_idx -b 4096 -s2 -f index -d " + this.indexDirectory.toString());
|
---|
565 | p.waitFor();
|
---|
566 | if (p.exitValue() == 0) {
|
---|
567 | System.out.println("Stemmed index successfully written");
|
---|
568 | }
|
---|
569 | else {
|
---|
570 | System.out.println("Unable to create stemmed index");
|
---|
571 | }
|
---|
572 |
|
---|
573 | p = Runtime.getRuntime().exec("mg_stem_idx -b 4096 -s3 -f index -d " + this.indexDirectory.toString());
|
---|
574 | p.waitFor();
|
---|
575 | if (p.exitValue() == 0) {
|
---|
576 | System.out.println("Stemmed index successfully written");
|
---|
577 | }
|
---|
578 | else {
|
---|
579 | System.out.println("Unable to create stemmed index");
|
---|
580 | }
|
---|
581 | break;
|
---|
582 | }
|
---|
583 | }
|
---|
584 | catch (IOException ex)
|
---|
585 | { System.out.println(ex);
|
---|
586 | ex.printStackTrace();
|
---|
587 | return false;
|
---|
588 | }
|
---|
589 | catch (InterruptedException ex)
|
---|
590 | { System.out.println(ex);
|
---|
591 | ex.printStackTrace();
|
---|
592 | return false;
|
---|
593 | }
|
---|
594 | return true;
|
---|
595 | }
|
---|
596 |
|
---|
597 | /**
|
---|
598 | * Do any tidying up
|
---|
599 | */
|
---|
600 | public void tidyup()
|
---|
601 | {
|
---|
602 | }
|
---|
603 |
|
---|
604 | /**
|
---|
605 | * Return the number of passes required for this index.
|
---|
606 | */
|
---|
607 | public int getNumberOfPasses()
|
---|
608 | { return 2 + this.indexes.size() * 2;
|
---|
609 | }
|
---|
610 | }
|
---|