Moved the call to gsicontrol.sh reset-gsdlhome from server.jar to gs2-server.sh since in server.jar, the log4j.properties need to be initialised in the server's constructor. Doing the reset-gsdlhome in gs2-server.sh achieves the same end-goal without this problem: on starting the server interface, reset-gsdlhome is always invoked to ensure that it will run from the current gs2-install directory.
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