Ignore:
Timestamp:
2019-09-04T14:45:52+12:00 (5 years ago)
Author:
cpb16
Message:

Started implementing Davids suggested morphology sequence, codeversion9

Location:
other-projects/is-sheet-music-encore/trunk
Files:
6 edited

Legend:

Unmodified
Added
Removed

  • other-projects/is-sheet-music-encore/trunk/EndToEndSystem.sh

    r33439 r33455  
    3535#Classifier Scripts [HIGHRES BY DEFUALT]
    3636#****************************************************************************************************
     37if [ $type == "morph" ] ; then
     38    if [ $# != 2 ] ; then
     39        echo "Usage:./EndToEndSystem cluster <ResultSubDirectory>"
     40        exit 1
     41    fi
     42    location=$2
     43    #Compile
     44    echo "Compiling java programs..."
     45    cd image-identification-terminal
     46    javac javaAccuracyCalculator.java
     47    javac -cp /Scratch/cpb16/opencv-3.4.2/build/bin/opencv-342.jar javaClassifierComparison.java;
     48    #Classifiers
     49    echo "Successfuly Compiled, running classifer now..."
     50    ./runClassifer.sh /Scratch/cpb16/is-sheet-music-encore/hires-download-images/MU morphology log-EndToEnd/$location/log-morph-MU.txt -allNew
     51    ./runClassifer.sh /Scratch/cpb16/is-sheet-music-encore/hires-download-images/BK morphology log-EndToEnd/$location/log-morph-BK.txt -allNew
     52    ./runClassifer.sh /Scratch/cpb16/is-sheet-music-encore/hires-download-images/MP morphology log-EndToEnd/$location/log-morph-MP.txt -allNew
     53    ./runClassifer.sh /Scratch/cpb16/is-sheet-music-encore/hires-download-images/SE morphology log-EndToEnd/$location/log-morph-SE.txt -allNew
     54    #Results
     55    echo "Successfuly Classified, writing results now..."
     56    mkdir log-EndToEnd/$location/
     57    echo $'\n***********************************************\n' >> log-EndToEnd/$location/results.txt
     58    date >> log-EndToEnd/$location/results.txt
     59    echo >> log-EndToEnd/$location/results.txt
     60    #echo "" >> log-EndToEnd/$location/results.txt
     61    cat configClassifierComparison.properties >> log-EndToEnd/$location/results.txt
     62    java javaAccuracyCalculator log-EndToEnd/$location/log-morph-MU.txt morph-MU log-EndToEnd/$location/results.txt
     63    java javaAccuracyCalculator log-EndToEnd/$location/log-morph-BK.txt morph-BK log-EndToEnd/$location/results.txt
     64    java javaAccuracyCalculator log-EndToEnd/$location/log-morph-MP.txt morph-MP log-EndToEnd/$location/results.txt
     65    java javaAccuracyCalculator log-EndToEnd/$location/log-morph-SE.txt morph-SE log-EndToEnd/$location/results.txt
     66    .././calculateCorpusAccuracy.sh
     67    less log-EndToEnd/$location/results.txt
     68    exit 1
     69fi
     70
    3771if [ $type == "cluster" ] ; then
    3872   

  • other-projects/is-sheet-music-encore/trunk/image-identification-dev-02/.idea/workspace.xml

    r33449 r33455  
    1515        <entry file="file://$PROJECT_DIR$/image-identification-development/src/Main.java">
    1616          <provider selected="true" editor-type-id="text-editor">
    17             <state relative-caret-position="-53">
    18               <caret line="746" column="42" selection-start-line="746" selection-start-column="42" selection-end-line="746" selection-end-column="42" />
     17            <state relative-caret-position="677">
     18              <caret line="779" column="12" selection-start-line="779" selection-start-column="12" selection-end-line="779" selection-end-column="12" />
    1919              <folding>
    2020                <element signature="imports" expanded="true" />
    … …  
    4040        <entry file="file://$PROJECT_DIR$/image-identification-development/src/MainMorph.java">
    4141          <provider selected="true" editor-type-id="text-editor">
    42             <state relative-caret-position="33">
    43               <caret line="143" column="32" selection-start-line="143" selection-start-column="32" selection-end-line="143" selection-end-column="32" />
     42            <state relative-caret-position="144">
     43              <caret line="1217" column="16" selection-start-line="1217" selection-start-column="16" selection-end-line="1217" selection-end-column="16" />
    4444              <folding>
    4545                <element signature="imports" expanded="true" />
    4646                <element signature="class#Pair#0;class#MainMorph#0" />
    4747                <element signature="method#imageViewer#0;class#MainMorph#0" />
    48                 <element signature="e#11259#13729#1" />
    49                 <element signature="e#13814#15817#1" />
    50                 <element signature="e#15886#18509#1" />
    51                 <element signature="e#18593#24264#1" />
    52                 <element signature="e#24349#28326#1" />
    53                 <element signature="e#28394#29572#1" />
    54                 <element signature="e#29641#33604#1" />
    55                 <element signature="e#33714#45393#1" />
     48                <element signature="e#13990#16460#1" />
     49                <element signature="e#16545#18548#1" />
     50                <element signature="e#18617#21240#1" />
     51                <element signature="e#21324#26995#1" />
     52                <element signature="e#27080#31057#1" />
     53                <element signature="e#31125#32303#1" />
     54                <element signature="e#32372#36335#1" />
     55                <element signature="e#36445#48148#1" />
    5656                <element signature="e#42969#43036#0" />
    57                 <element signature="e#45494#55203#1" />
     57                <element signature="e#48242#59125#1" />
    5858              </folding>
    5959            </state>
    … …  
    6464        <entry file="file://$PROJECT_DIR$/../image-identification-terminal/javaClassifierComparison.java">
    6565          <provider selected="true" editor-type-id="text-editor">
    66             <state relative-caret-position="338">
     66            <state relative-caret-position="1539">
    6767              <caret line="135" column="4" selection-start-line="135" selection-start-column="4" selection-end-line="160" selection-end-column="5" />
    6868              <folding>
    … …  
    107107        <option value="$PROJECT_DIR$/../image-identification-terminal/javaImageClassifier.java" />
    108108        <option value="$PROJECT_DIR$/../image-identification-terminal/javaClassifierComparison" />
     109        <option value="$PROJECT_DIR$/../image-identification-terminal/javaClassifierComparison.java" />
    109110        <option value="$PROJECT_DIR$/image-identification-development/src/Main.java" />
    110         <option value="$PROJECT_DIR$/../image-identification-terminal/javaClassifierComparison.java" />
    111111        <option value="$PROJECT_DIR$/image-identification-development/src/MainMorph.java" />
    112112      </list>
    … …  
    189189      <window_info anchor="bottom" id="Message" order="0" />
    190190      <window_info anchor="bottom" id="Find" order="1" weight="0.32962137" />
    191       <window_info anchor="bottom" id="Run" order="2" weight="0.27616927" />
     191      <window_info anchor="bottom" id="Run" order="2" weight="0.27951002" />
    192192      <window_info anchor="bottom" id="Debug" order="3" weight="0.3997773" />
    193193      <window_info anchor="bottom" id="Cvs" order="4" weight="0.25" />
    … …  
    234234      </provider>
    235235    </entry>
    236     <entry file="file://$PROJECT_DIR$/image-identification-development/src/Main.java">
    237       <provider selected="true" editor-type-id="text-editor">
    238         <state relative-caret-position="-53">
    239           <caret line="746" column="42" selection-start-line="746" selection-start-column="42" selection-end-line="746" selection-end-column="42" />
    240           <folding>
    241             <element signature="imports" expanded="true" />
    242             <element signature="class#StartAndEndPoint#0;class#Main#0" />
    243             <element signature="method#removeDuplicates#0;class#Main#0" />
    244             <element signature="method#StandardDeviation#0;class#Main#0" />
    245             <element signature="method#VarianceCalc#0;class#Main#0" />
    246             <element signature="method#lineComparison#0;class#Main#0" />
    247             <element signature="method#ClusterCheck#0;class#Main#0" />
    248             <element signature="method#toBufferedImage#0;class#Main#0" />
    249             <element signature="method#ClassifierPixelCount#0;class#Main#0" />
    250             <element signature="method#ClassifierLineCount#0;class#Main#0" />
    251             <element signature="method#ClassifierLineClusterOLD#0;class#Main#0" />
    252             <element signature="method#ClassifierLineCluster#0;class#Main#0" />
    253             <element signature="method#ClassifierLineClusterPt#0;class#Main#0" />
    254             <element signature="method#LineCountOrCluster#0;class#Main#0" />
    255           </folding>
    256         </state>
    257       </provider>
    258     </entry>
    259236    <entry file="file://$PROJECT_DIR$/../image-identification-terminal/javaClassifierComparison.java">
    260237      <provider selected="true" editor-type-id="text-editor">
    261         <state relative-caret-position="338">
     238        <state relative-caret-position="1539">
    262239          <caret line="135" column="4" selection-start-line="135" selection-start-column="4" selection-end-line="160" selection-end-column="5" />
    263240          <folding>
    … …  
    280257      </provider>
    281258    </entry>
     259    <entry file="file://$PROJECT_DIR$/image-identification-development/src/Main.java">
     260      <provider selected="true" editor-type-id="text-editor">
     261        <state relative-caret-position="677">
     262          <caret line="779" column="12" selection-start-line="779" selection-start-column="12" selection-end-line="779" selection-end-column="12" />
     263          <folding>
     264            <element signature="imports" expanded="true" />
     265            <element signature="class#StartAndEndPoint#0;class#Main#0" />
     266            <element signature="method#removeDuplicates#0;class#Main#0" />
     267            <element signature="method#StandardDeviation#0;class#Main#0" />
     268            <element signature="method#VarianceCalc#0;class#Main#0" />
     269            <element signature="method#lineComparison#0;class#Main#0" />
     270            <element signature="method#ClusterCheck#0;class#Main#0" />
     271            <element signature="method#toBufferedImage#0;class#Main#0" />
     272            <element signature="method#ClassifierPixelCount#0;class#Main#0" />
     273            <element signature="method#ClassifierLineCount#0;class#Main#0" />
     274            <element signature="method#ClassifierLineClusterOLD#0;class#Main#0" />
     275            <element signature="method#ClassifierLineCluster#0;class#Main#0" />
     276            <element signature="method#ClassifierLineClusterPt#0;class#Main#0" />
     277            <element signature="method#LineCountOrCluster#0;class#Main#0" />
     278          </folding>
     279        </state>
     280      </provider>
     281    </entry>
    282282    <entry file="file://$PROJECT_DIR$/image-identification-development/src/MainMorph.java">
    283283      <provider selected="true" editor-type-id="text-editor">
    284         <state relative-caret-position="33">
    285           <caret line="143" column="32" selection-start-line="143" selection-start-column="32" selection-end-line="143" selection-end-column="32" />
     284        <state relative-caret-position="144">
     285          <caret line="1217" column="16" selection-start-line="1217" selection-start-column="16" selection-end-line="1217" selection-end-column="16" />
    286286          <folding>
    287287            <element signature="imports" expanded="true" />
    288288            <element signature="class#Pair#0;class#MainMorph#0" />
    289289            <element signature="method#imageViewer#0;class#MainMorph#0" />
    290             <element signature="e#11259#13729#1" />
    291             <element signature="e#13814#15817#1" />
    292             <element signature="e#15886#18509#1" />
    293             <element signature="e#18593#24264#1" />
    294             <element signature="e#24349#28326#1" />
    295             <element signature="e#28394#29572#1" />
    296             <element signature="e#29641#33604#1" />
    297             <element signature="e#33714#45393#1" />
     290            <element signature="e#13990#16460#1" />
     291            <element signature="e#16545#18548#1" />
     292            <element signature="e#18617#21240#1" />
     293            <element signature="e#21324#26995#1" />
     294            <element signature="e#27080#31057#1" />
     295            <element signature="e#31125#32303#1" />
     296            <element signature="e#32372#36335#1" />
     297            <element signature="e#36445#48148#1" />
    298298            <element signature="e#42969#43036#0" />
    299             <element signature="e#45494#55203#1" />
     299            <element signature="e#48242#59125#1" />
    300300          </folding>
    301301        </state>

  • other-projects/is-sheet-music-encore/trunk/image-identification-dev-02/image-identification-development/src/Main.java

    r33449 r33455  
    768768            //String default_file =hiresDirectory+"BK/NotSheetMusic/aeu.ark+=13960=t2q53nq6w-6.png";
    769769
    770             String default_file = "/Scratch/cpb16/is-sheet-music-encore/image-identification-terminal/TestImages/test-coo.31924062612282-9.png";
     770            //String default_file = "/Scratch/cpb16/is-sheet-music-encore/image-identification-terminal/TestImages/test-coo.31924062612282-9.png";
    771771            //String default_file = "/Scratch/cpb16/is-sheet-music-encore/image-identification-terminal/TestImages/mdp.39015080937769-1.png";
    772772            //String default_file = "/Scratch/cpb16/is-sheet-music-encore/hires-download-images/MU/SheetMusic/coo.31924062612282-9.png";
    … …  
    778778            //String default_file = "TestImages/SheetMusic01.png";
    779779            //String default_file = "TestImages/SheetMusic02.png";
    780             //String default_file = "TestImages/vLine.png";
     780            String default_file = "TestImages/vLine.png";
    781781            String filename = ((args.length > 0) ? args[0] : default_file);
    782782            File file = new File(filename);

  • other-projects/is-sheet-music-encore/trunk/image-identification-dev-02/image-identification-development/src/MainMorph.java

    r33449 r33455  
    6969import static org.opencv.highgui.HighGui.createJFrame;
    7070import static org.opencv.highgui.HighGui.imshow;
     71import static org.opencv.imgcodecs.Imgcodecs.imread;
    7172import static org.opencv.imgcodecs.Imgcodecs.imwrite;
    7273
    … …  
    205206            //!!!!!!!!!!!!!!!!!!!!!!!!!!!NOTNOT!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
    206207            //coo.31924062612282-9.png 8   lines
    207             //String default_file = directory+"NotSheetMusic/coo.31924062612282-9.png";
    208             //String default_file = directory+"NotSheetMusic/mdp.39015097852365-2.png";
    209208            //String default_file =testDirectory+"TestImages/NotNot/mdp.39015080972303-3.png"; //WHY GREY? DUE TO IMAGE LARGE, ZOOM IN
    210209            //String default_file =hiresDirectory+"BK/NotSheetMusic/aeu.ark+=13960=t2q53nq6w-6.png";
    … …  
    214213            //String default_file =hiresDirectory+"MU/SheetMusic/bc.ark+=13960=t2j72dt1p-10.png";
    215214            //String default_file =hiresDirectory+"MU/SheetMusic/bc.ark+=13960=t2j72dt1p-7.png";
    216             String default_file =hiresDirectory+"MU/SheetMusic/coo.31924062612282-9.png";
     215            //String default_file =hiresDirectory+"MU/SheetMusic/coo.31924062612282-9.png";
    217216            //String default_file =hiresDirectory+"MU/NotSheetMusic/mdp.39015096363935-1.png";
    218217            //String default_file =hiresDirectory+"MU/SheetMusic/coo.31924062612282-9.png";
    219218            //String default_file = "/Scratch/cpb16/is-sheet-music-encore/image-identification-terminal/TestImages/hi-res-test-coo.31924062612282-9.png";
     219
     220            //String default_file = hiresDirectory+"/BK/NotSheetMusic/aeu.ark+=13960=t2s47k537-4.png"; //centre example
     221            //String default_file = hiresDirectory+"/BK/NotSheetMusic/aeu.ark+=13960=t3tt4xf2t-2.png"; //cross
    220222            //TestNew images used
    221 
    222             //String default_file = hiresDirectory+"/MU/SheetMusic/aeu.ark+=13960=t93787r1w-10.png";
    223             //String default_file = "hiresDirectory+"/MU/SheetMusic/bc.ark+=13960=t2j72dt1p-10.png";
    224             //String default_file = hiresDirectory+"/MU/SheetMusic/bc.ark+=13960=t2j72dt1p-7.png";  //Handwritten
    225             //String default_file = hiresDirectory+"/MU/SheetMusic/bc.ark+=13960=t2j72dt1p-8.png";  //Handwritten
    226             //String default_file = hiresDirectory+"/MU/SheetMusic/bc.ark+=13960=t2j72dt1p-9.png";    //Handwritten
    227             //String default_file = hiresDirectory+"/MU/SheetMusic/coo.31924062612282-9.png";
    228             //String default_file = hiresDirectory+"/MU/SheetMusic/dul1.ark+=13960=t2x41569k-10.png";
     223            //String default_file = hiresDirectory+"/MU/SheetMusic/aeu.ark+=13960=t93787r1w-10.png";    //Bleed
     224            //String default_file = hiresDirectory+"/MU/SheetMusic/bc.ark+=13960=t2j72dt1p-10.png";     //Handwritten
     225            //String default_file = hiresDirectory+"/MU/SheetMusic/bc.ark+=13960=t2j72dt1p-7.png";      //Handwritten 3072 4176
     226            //String default_file = hiresDirectory+"/MU/SheetMusic/bc.ark+=13960=t2j72dt1p-8.png";      //Handwritten
     227            //String default_file = hiresDirectory+"/MU/SheetMusic/bc.ark+=13960=t2j72dt1p-9.png";      //Handwritten
     228            String default_file = hiresDirectory+"/MU/SheetMusic/coo.31924062612282-9.png";           //Snippet
     229            //String default_file = hiresDirectory+"/MU/SheetMusic/dul1.ark+=13960=t2x41569k-10.png";   //Generated
    229230            //String default_file = hiresDirectory+"/MU/SheetMusic/dul1.ark+=13960=t2x41569k-7.png";
    230231            //String default_file = hiresDirectory+"/MU/SheetMusic/dul1.ark+=13960=t2x41569k-8.png";
    231232            //String default_file = hiresDirectory+"/MU/SheetMusic/dul1.ark+=13960=t2x41569k-9.png";
    232             //String default_file = hiresDirectory+"/MU/NotSheetMusic/aeu.ark+=13960=t0dv28v9r-10.png";
    233             //String default_file = hiresDirectory+"/MU/NotSheetMusic/aeu.ark+=13960=t0dv28v9r-1.png";
    234             //String default_file = hiresDirectory+"/MU/NotSheetMusic/aeu.ark+=13960=t0dv28v9r-2.png";
     233            //String default_file = hiresDirectory+"/MU/NotSheetMusic/aeu.ark+=13960=t0dv28v9r-10.png"; //contentpage
     234            //String default_file = hiresDirectory+"/MU/NotSheetMusic/aeu.ark+=13960=t0dv28v9r-1.png";  //Image evaluation
     235            //String default_file = hiresDirectory+"/MU/NotSheetMusic/aeu.ark+=13960=t0dv28v9r-2.png";  //large numbers
    235236            //String default_file = hiresDirectory+"/MU/NotSheetMusic/aeu.ark+=13960=t0dv28v9r-3.png";
    236237            //String default_file = hiresDirectory+"/MU/NotSheetMusic/aeu.ark+=13960=t0dv28v9r-4.png";
    … …  
    240241            //String default_file = hiresDirectory+"/MU/NotSheetMusic/aeu.ark+=13960=t0dv28v9r-8.png";
    241242            //String default_file = hiresDirectory+"/MU/NotSheetMusic/aeu.ark+=13960=t0dv28v9r-9.png";
    242 
    243 
    244 
    245 
    246 
    247 
    248 
    249 
    250 
    251 
    252 
    253 
    254243
    255244
    … …  
    268257
    269258            // Load an image
    270             Mat original1 = Imgcodecs.imread(filename, Imgcodecs.IMREAD_GRAYSCALE);
    271             System.out.println("Width: " + original1.width() + " Height: " + original1.height());
    272             Mat original = original1.clone();
     259            Mat original = Imgcodecs.imread(filename, Imgcodecs.IMREAD_GRAYSCALE);
     260            System.out.println("Width: " + original.width() + " Height: " + original.height());
     261            Mat binarizedOriginal = original.clone();
    273262           
    274             Imgproc.adaptiveThreshold(original1, original,255, Imgproc.ADAPTIVE_THRESH_GAUSSIAN_C,Imgproc.THRESH_BINARY_INV, 15, THRESHOLD_C);
     263            Imgproc.adaptiveThreshold(original, binarizedOriginal,255, Imgproc.ADAPTIVE_THRESH_GAUSSIAN_C,Imgproc.THRESH_BINARY_INV, 15, THRESHOLD_C);
    275264            //TEST PARAMETERSImgproc.adaptiveThreshold(original, edgesDetected,255, Imgproc.ADAPTIVE_THRESH_GAUSSIAN_C,Imgproc.THRESH_BINARY_INV, 531,1);
    276265            //Imgproc.threshold(original,original, 127, 255, Imgproc.THRESH_BINARY);
    … …  
    286275            //dynamic morphology??
    287276            if(CODE_VERSION == 1) {
    288                 int hori = original.width();
    289                 int vert = original.height();
     277                int hori = binarizedOriginal.width();
     278                int vert = binarizedOriginal.height();
    290279                //Find ratio between 100 and width and 100 and height
    291280                int divX = hori/10;
    … …  
    294283                int sizeY = (vert/divY) * 10;
    295284
    296                 Mat test = original.clone();
     285                Mat test = binarizedOriginal.clone();
    297286                imageViewer("Original", test);
    298287
    … …  
    336325
    337326                //MAKE SURE BLACK & WHITE
    338                 Mat test = original.clone();
     327                Mat test = binarizedOriginal.clone();
    339328                imageViewer("00 Binarized Original", test);
    340329
    … …  
    377366            //Tutorial/Demo Code
    378367            if (CODE_VERSION == 3) {
    379                 Mat horizontal = original.clone();
    380                 Mat vertical = original.clone();
     368                Mat horizontal = binarizedOriginal.clone();
     369                Mat vertical = binarizedOriginal.clone();
    381370                // Specify size on horizontal axis
    382371                int horizontal_size = horizontal.cols() / 50;
    … …  
    429418
    430419                //Display Original
    431                 imageViewer("original", original1);
    432 
    433                 Mat test = original.clone();
    434                 Mat pre = original.clone();
     420                imageViewer("original", original);
     421
     422                Mat test = binarizedOriginal.clone();
     423                Mat pre = binarizedOriginal.clone();
    435424                Mat dst = new Mat();
    436425
    … …  
    545534            //Better morphology attempt - dynamic
    546535            if(CODE_VERSION == 5) {
    547                 int hori = original.width();
    548                 int vert = original.height();
     536                int hori = binarizedOriginal.width();
     537                int vert = binarizedOriginal.height();
    549538                //Find ratio between 100 and width and 100 and height
    550539                int sizeX100 = 10 * (hori/68);
    … …  
    560549                System.out.println(hori + " " + vert + " "  + sizeX1 + " " + sizeY1);
    561550                //Display Original
    562                 imageViewer("original", original1);
    563 
    564                 Mat test = original.clone();
     551                imageViewer("original", original);
     552
     553                Mat test = binarizedOriginal.clone();
    565554                imageViewer("00 Inverse Binarized Original", test);
    566555
    … …  
    629618                //Get source image and binerize
    630619                Mat src = Imgcodecs.imread(path, Imgcodecs.IMREAD_GRAYSCALE);
    631                 Imgproc.adaptiveThreshold(original1, src,255, Imgproc.ADAPTIVE_THRESH_GAUSSIAN_C,Imgproc.THRESH_BINARY_INV, 15, THRESHOLD_C);
     620                Imgproc.adaptiveThreshold(original, src,255, Imgproc.ADAPTIVE_THRESH_GAUSSIAN_C,Imgproc.THRESH_BINARY_INV, 15, THRESHOLD_C);
    632621                imageViewer("src", src);
    633622
    … …  
    652641
    653642                //Display Original
    654                 imageViewer("original", original1);
    655 
    656                 Mat src = original.clone();
    657                 Mat test = original.clone();
     643                imageViewer("original", original);
     644
     645                Mat src = binarizedOriginal.clone();
     646                Mat test = binarizedOriginal.clone();
    658647                Mat mask = new Mat();
    659648                Mat dst = new Mat();
    … …  
    738727
    739728                //Display Original
    740                 imageViewer("original", original1);
    741 
    742                 Mat test = original.clone();
     729                imageViewer("original", original);
     730
     731                Mat test = binarizedOriginal.clone();
    743732
    744733
    … …  
    749738                //Large Object Removal
    750739                //************************************
    751                 Mat srcLOR = original.clone();
     740                Mat srcLOR = binarizedOriginal.clone();
    752741                Mat maskLOR = new Mat();
    753742                Mat dstLOR = new Mat();
    … …  
    976965                    //Imgproc.adaptiveThreshold(original1, original,255, Imgproc.ADAPTIVE_THRESH_GAUSSIAN_C,Imgproc.THRESH_BINARY_INV, 15, THRESHOLD_C);
    977966
    978                     Mat test = original.clone();
     967                    Mat test = binarizedOriginal.clone();
    979968                    //************************************
    980969                    //Large Object Removal
    981970                    //************************************
    982                     Mat srcLOR = original.clone();
     971                    Mat srcLOR = binarizedOriginal.clone();
    983972                    Mat maskLOR = new Mat();
    984973                    Mat dstLOR = new Mat();
    … …  
    11661155            //Reset after david chat
    11671156            if(CODE_VERSION == 9){
    1168                 //1. Remove large items (needs to be larger kernel, should not remove bar lines)
    1169                 //2. Remove text
    1170                 //3. Standard plan from presentation
     1157                //Display Original
     1158                imageViewer("original", original);
     1159                Mat base = binarizedOriginal.clone();
     1160                imageViewer("00 Inverse Binarized Original", base);
     1161
     1162
     1163                //************************************
     1164                //1. Large object Remover
     1165                //************************************
     1166                Mat srcLOR = binarizedOriginal.clone();
     1167                Mat maskLOR = new Mat();
     1168                Mat dstLOR = new Mat();
     1169
     1170                //Remove small objects in prep for masking  (De-Noise)
     1171                Mat removeSmallLOR = Imgproc.getStructuringElement(Imgproc.MORPH_RECT, new Size(5,5));
     1172                Imgproc.morphologyEx(srcLOR,maskLOR, Imgproc.MORPH_OPEN, removeSmallLOR);
     1173                imageViewer("001 De-noise", maskLOR);
     1174
     1175                //heal the large items
     1176                Mat healLOR = Imgproc.getStructuringElement(Imgproc.MORPH_RECT, new Size(10,10));
     1177                Imgproc.morphologyEx(maskLOR,maskLOR, Imgproc.MORPH_CLOSE, healLOR);
     1178                imageViewer("002 heal objects in mask", maskLOR);
     1179
     1180                //IsolateLarge
     1181                Mat isolateLargeLOR = Imgproc.getStructuringElement(Imgproc.MORPH_RECT, new Size(20,20));
     1182                Imgproc.erode(maskLOR,maskLOR,isolateLargeLOR);
     1183                imageViewer("003 Isolate large", maskLOR);
     1184
     1185                Core.bitwise_not(maskLOR,maskLOR);
     1186                srcLOR.copyTo(dstLOR, maskLOR);
     1187                imageViewer("100 Large Items Removed", dstLOR);
     1188
     1189                //***********************************
     1190                //2. Text-sized Object Removal
     1191                //***********************************
     1192
     1193                Mat srcTOR = dstLOR.clone();
     1194                Mat maskTOR = new Mat();
     1195                Mat dstTOR = new Mat();
     1196
     1197                //Remove small objects in prep for masking (De-Noise)
     1198                Mat removeSmallTOR = Imgproc.getStructuringElement(Imgproc.MORPH_RECT, new Size(5,5));
     1199                Imgproc.morphologyEx(srcTOR,maskTOR, Imgproc.MORPH_OPEN, removeSmallTOR);
     1200                imageViewer("101 Remove Small from mask", maskTOR);
     1201
     1202                //heal the large items
     1203                Mat healTOR = Imgproc.getStructuringElement(Imgproc.MORPH_RECT, new Size(10,10));
     1204                Imgproc.morphologyEx(maskTOR,maskTOR, Imgproc.MORPH_CLOSE, healTOR);
     1205                imageViewer("102 heal objects in mask", maskTOR);
     1206
     1207                //Highlight black outline
     1208                Mat highlightLargeTOR = Imgproc.getStructuringElement(Imgproc.MORPH_RECT, new Size(10,10));
     1209                Imgproc.erode(maskTOR,maskTOR,highlightLargeTOR);
     1210                imageViewer("103 highlight objects", maskTOR);
     1211
     1212                Core.bitwise_not(maskTOR, maskTOR);
     1213                srcTOR.copyTo(dstTOR, maskTOR);
     1214                imageViewer("200 Black outline Removed", dstTOR);
     1215
     1216                //***********************************
     1217                //3. Standard plan from presentation (TAKEN FROM CODE VERSION 5)
     1218                //***********************************
     1219                Mat kernelErode = Imgproc.getStructuringElement(Imgproc.MORPH_RECT, new Size(20,2));
     1220                Imgproc.erode(dstTOR,base,kernelErode);
     1221                imageViewer("201 Erode plus pre", base);
     1222
     1223                Mat kernelDilate = Imgproc.getStructuringElement(Imgproc.MORPH_RECT, new Size(20,2));
     1224                Imgproc.dilate(base,base,kernelDilate);
     1225                imageViewer("202 Dilate", base);
     1226
     1227                Mat kernelClosing = Imgproc.getStructuringElement(Imgproc.MORPH_RECT, new Size(20,5));
     1228                Imgproc.morphologyEx(base, base, Imgproc.MORPH_CLOSE, kernelClosing);
     1229                imageViewer("203 Close", base);
     1230
     1231                Mat kernelErode02 = Imgproc.getStructuringElement(Imgproc.MORPH_RECT, new Size(10,2));
     1232                Imgproc.erode(base,base,kernelErode02);
     1233                imageViewer("204 Erode (Final)", base);
     1234
    11711235                //4. Classify like line clusters.
    11721236            }
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