source: gs2-extensions/parallel-building/trunk/src/bin/script/hadoop_import.pl@ 27594

#!/usr/bin/perl
use strict;
use warnings;

# Requires setup.bash to have been sourced
BEGIN
{
  die "GSDLHOME not set\n" unless defined $ENV{'GSDLHOME'};
  die "GSDLOS not set\n" unless defined $ENV{'GSDLOS'};
  die "GEXTPARALLELBUILDING not set\n" unless defined $ENV{'GEXTPARALLELBUILDING'};
  die "GEXTPARALLELBUILDING_INSTALLED not set\n" unless defined $ENV{'GEXTPARALLELBUILDING_INSTALLED'};
  die "HDFS HOST not set (set in <gsdl>/ext/parallel_processing/setup.bash)\n" unless defined $ENV{'HDFSHOST'};
  die "HDFS PORT not set (set in <gsdl>/ext/parallel_processing/setup.bash)\n" unless defined $ENV{'HDFSPORT'};
}

print "===== Greenstone Import using Hadoop =====\n";

# 0. Init
my $collection = 'test';
my $use_thrift = 1;
my $start_thrift = 1;
my $debug = 0;
my $dry_run = 0;
my $gsdl_home = $ENV{'GSDLHOME'};
my $gsdl_hadoop_ext = $ENV{'GEXTPARALLELBUILDING_INSTALLED'};
my $hadoop_exe = 'hadoop'; # you may add path
my $cluster_head = $ENV{'HDFSHOST'}; # may not be true on advanced configs
my $hdfs_fs_prefix = 'HDThriftFS://';
my $refresh_import = 0;
my $username = `whoami`;
chomp($username);

`rocks > /dev/null 2>&1`;
my $is_rocks_cluster = ($? == 0);

# 1. Read and validate parameters
if (defined $ARGV[0])
{
  $collection = $ARGV[0];
}
else
{
  print STDERR "usage: hadoop_import.pl <collection> [-debug] [-dry_run] [-start_thrift] [-disable_thrift] [-refresh_import] \n\n";
}
my $offset = 1;
while (defined $ARGV[$offset])
{
  if ($ARGV[$offset] eq '-debug')
  {
    $debug = 1;
  }
  if ($ARGV[$offset] eq '-disable_thrift')
  {
    $use_thrift = 0;
  }
  if ($ARGV[$offset] eq '-dry_run')
  {
    $dry_run = 1;
  }
  if ($ARGV[$offset] eq '-refresh_import')
  {
    $refresh_import = 1;
  }
  $offset++;
}

if (!$use_thrift)
{
  $hdfs_fs_prefix = 'HDFSShell://';
}

my $gs_collection_dir = $gsdl_home . '/collect/' . $collection;
my $gs_import_dir = $gs_collection_dir . '/import';
if (!-d $gs_import_dir)
{
  die("Error! Collection's import directory cannot be found: " . $gs_import_dir . "\n");
}
my $gs_results_dir = $gs_collection_dir . '/results';
if (!-d $gs_results_dir)
{
  mkdir($gs_results_dir, 0755);
}
$gs_results_dir .= '/' . time();
if (!-d $gs_results_dir)
{
  mkdir($gs_results_dir, 0755);
}
# - directories within HDFS
#my $hdfs_input_dir = &urlCat('hdfs://' . $ENV{'HDFSHOST'} . ':' . $ENV{'HDFSPORT'}, 'user', $username, 'gsdl', 'collect', $collection, 'import');
my $hdfs_input_dir = &urlCat('hdfs://', 'user', $username, 'gsdl', 'collect', $collection, 'import');
#my $hdfs_output_dir = &urlCat('hdfs://' . $ENV{'HDFSHOST'} . ':' . $ENV{'HDFSPORT'}, 'user', $username, 'gsdl', 'collect', $collection, 'archives');
my $hdfs_output_dir = &urlCat('hdfs://', 'user', $username, 'gsdl', 'collect', $collection, 'archives');

# 2. Copy the import directory into HDFS
print " * Replicating import directory in HDFS...";
# - check if import directory already exists
my $hdfs_import_exists = &hdfsTest('d', 0, $hdfs_input_dir);
if ($refresh_import || !$hdfs_import_exists)
{
  # - clear out the old import directory
  if ($hdfs_import_exists)
  {
    &hdfsCommand('rmr', $hdfs_input_dir);
  }
  # - now recursively copy the contents of import directory into HDFS ensuring
  #   that relative paths are maintained
  my $file_count = &recursiveCopy($gs_import_dir, $hdfs_input_dir);
  &debugPrint($file_count . " files 'putted'");
  print "Done!\n";
}
else
{
  print "Already exists!\n";
}
# - clear out the archives regardless
my $gs_archives_dir = $gs_collection_dir . '/archives';
my $deleted_archives = 0;
if (-e $gs_archives_dir)
{
  print " * Clearing existing archives directory for this collection... ";
  &shellCommand('rm -rf "' . $gs_archives_dir . '"');
  $deleted_archives = 1;
}
mkdir($gs_archives_dir, 0755);
if (&hdfsTest('d', 0, $hdfs_output_dir))
{
  if (!$deleted_archives)
  {
    print " * Clearing existing archives directory for this collection... ";
  }
  &hdfsCommand('rmr', $hdfs_output_dir);
  $deleted_archives = 1;
}
if ($deleted_archives)
{
  print "Done!\n";
}
# - watch for cached directories for Media based collections
my $gs_cached_dir = $gs_collection_dir . '/cached';
if (-e $gs_cached_dir)
{
  print " * Clearing existing cached media directory for this collection... ";
  &shellCommand('rm -rf "' . $gs_cached_dir . '"');
  print "Done!\n";
}

# - clear out any old logs
print " * Clearing existing logs for this collection... ";
my $gs_logs_dir = $gs_collection_dir . '/logs';
if (!&dirIsEmpty($gs_logs_dir))
{
  &shellCommand('rm -f ' . $gs_logs_dir . '/*.*');
}
if (!&dirIsEmpty('/tmp/greenstone'))
{
  &shellCommand('rm -f /tmp/greenstone/*.*');
  &shellCommand('rm -rf /tmp/gsimport*');
}
if ($is_rocks_cluster)
{
  &shellCommand('rocks run host "rm -f /tmp/greenstone/*.*"');
  &shellCommand('rocks run host "rm -rf /tmp/gsimport*"');
}
print "Done!\n";

# - flush DNS cache too, so we are playing on a level field
print " * Flushing disk cache... ";
&shellCommand('flush_caches.pl');
if ($is_rocks_cluster)
{
  &shellCommand('rocks run host "flush_caches.pl"');
}
print "Done!\n";

# 3. Special case for *Server type infodbs (namely TDBServer and GDBMServer)
#    where we start the server now to ensure it lives on the head node
my $server_host = '';
my $server_port = '';
my $configuration_path = $gs_collection_dir . '/etc/collect.cfg';
my $infodbtype = `grep -P "^infodbtype" $configuration_path`;
my $server_prefix = '';
if ($infodbtype =~ /^infodbtype\s+(gdbm|tdb)server/i)
{
  $server_prefix = uc($1);
  print " * Starting " . $server_prefix . "Server... ";
  # - start the server on the head node and retrieve the host and port from
  #   the output
  my $launcher_command = $server_prefix . "Server.pl " . $$ . " " . $collection;
  my $launcher_output = &shellCommand($launcher_command);
  if ($launcher_output =~ /Server now listening on ([^:]+):(\d+)/)
  {
    $server_host = $1;
    $server_port = $2;
    print "running on " . $server_host . ":" . $server_port . "\n";
  }
  else
  {
    print "Failed!\n";
    exit;
  }
  # - use the client tool to add ourselves as a listener
  print " * Registering as listener... ";
  my $client_command = $server_prefix . "Client.pl " . $server_host . " " . $server_port . " \"#a:" . $$ . "\"";
  &shellCommand($client_command);
  print "Done!\n";
}
else
{
  print "Error! True Hadoop processing is only available when Greenstone is\n";
  print "       configured to use either GDBMServer or TDBServer.\n";
  exit;
}

# 3.5 Start up the thrift server(s) if we've been asked to
if ($start_thrift)
{
  if ($is_rocks_cluster)
  {
    print " * Starting Thrift Servers (on compute nodes)... ";
    &shellCommand('rocks run host "cd ' . $ENV{'GEXTPARALLELBUILDING'} . '/packages/ThriftFS-0.9.0/bin && ./thriftctl.sh start"');
  }
  # single server
  else
  {
    print " * Starting Thrift Server... ";
    &shellCommand('cd ' . $ENV{'GEXTPARALLELBUILDING'} . '/packages/ThriftFS-0.9.0/bin && thriftctl.sh start');
  }
  print "Done!\n";
}

# 4. Running Hadoop - we hand in the import dirctory (within HDFS) as the input
#    and allow the FileInputFormat to split it up into files to be processed
#    in Greenstone. This works for collections with one file per document, like
#    Lorem and ReplayMe, but might not work well with multiple file documents
#    such as the Demo collection
print " * Running import using Hadoop...";
my $hadoop_log = $gs_results_dir . '/hadoop.log';
&shellCommand('echo "host:$HDFSHOST" > ' . $hadoop_log);
my $hadoop_command = $hadoop_exe . ' jar ' . $gsdl_hadoop_ext . '/lib/hadoop-greenstone.jar org.nzdl.gsdl.HadoopGreenstoneIngest "' . $gsdl_home . '" "' . $hdfs_fs_prefix . '" "' . $ENV{'HADOOP_PREFIX'} . '" ' . $collection . ' "' .  $hdfs_input_dir . '" "' . $hdfs_output_dir . '" >> ' . $hadoop_log . ' 2>&1';
&shellCommand($hadoop_command);
print "Done!\n";

# 5. If we ran *Server infodbs, we now need to shut them down
if ($server_prefix ne '')
{
  print " * Deregistering as listener and shutting down... ";
  # - deregister as a listener
  my $client_command1 = $server_prefix . "Client.pl " . $server_host . " " . $server_port . " \"#r:" . $$ . "\"";
  &shellCommand($client_command1);
  # - send quit command
  my $client_command2 = $server_prefix . "Client.pl " . $server_host . " " . $server_port . " \"#q:" . $$ . "\"";
  &shellCommand($client_command2);
  print "Done!\n";
}

# 5.5 We started them - so we better stop the thrift servers too
# 3.5 Start up the thrift server(s) if we've been asked to
if ($start_thrift)
{
  if ($is_rocks_cluster)
  {
    print " * Stopping Thrift Servers (on compute nodes)... ";
    &shellCommand('rocks run host "cd ' . $ENV{'GEXTPARALLELBUILDING'} . '/packages/ThriftFS-0.9.0/bin && ./thriftctl.sh stop"');
  }
  # single server
  else
  {
    print " * Stoping Thrift Server... ";
    &shellCommand('cd ' . $ENV{'GEXTPARALLELBUILDING'} . '/packages/ThriftFS-0.9.0/bin && thriftctl.sh start');
  }
  print "Done!\n";
}

# 6. Gather logs
print " * Gathering logs from compute nodes... ";
# - local files
if (!&dirIsEmpty('/tmp/greenstone'))
{
  &shellCommand('cp /tmp/greenstone/*.* ' . $gs_results_dir);
}
if (-d $gs_collection_dir . '/logs')
{
  &shellCommand('cp ' . $gs_collection_dir . '/logs/*.* ' . $gs_results_dir);
}
# - remote files
if ($is_rocks_cluster)
{
  &shellCommand('rocks run host "scp /tmp/greenstone/*.* ' . $cluster_head . ':' . $gs_results_dir . '"');
&shellCommand('rocks run host "scp /tmp/gsimport-*/logs/*.log ' . $cluster_head . ':' . $gs_results_dir . '"');
}
print "Done!\n";
# - generate data locality report
&shellCommand('parse_task_info_from_hadoop_log.pl "' . $gs_results_dir . '"');

# 7. Done - clean up
print " * Cleaning up temporary files... ";
&shellCommand('rm -rf /tmp/greenstone');
&shellCommand('rm -rf /tmp/gsimport*');
if ($is_rocks_cluster)
{
  &shellCommand('rocks run host "rm -rf /tmp/greenstone"');
  &shellCommand('rocks run host "rm -rf /tmp/gsimport*"');
}
print "Done!\n";
print "Complete!\n\n";

exit;

# /** @function debugPrint
#  */
sub debugPrint
{
  my $msg = shift(@_);
  if ($debug)
  {
    print "[Debug] " . $msg . "\n";
  }
}
# /** debugPrint() **/

# /** @function hdfsCommand
#  */
sub hdfsCommand
{
  my $command = shift(@_);
  my $paths = '"' . join('" "', @_) . '"';
  my $hdfs_command = $hadoop_exe . ' fs -' . $command . ' ' . $paths . ' 2>&1';
  &shellCommand($hdfs_command);
  return $?;
}
# /** hdfsCommand() **/

# /** @function hdfsTest
#  */
sub hdfsTest
{
  my $command = shift(@_);
  my $test_target = shift(@_);
  my $result = &hdfsCommand('test -' . $command, @_);
  return ($result == $test_target);
}
# /** hdfsTest() **/

# /**
#  */
sub printUsage
{
  print "usage: hadoop_import.pl <collection> [<refresh_import>] [<\"removeold\"|\"keepold\">]\n";
  exit;
}
# /** printUsage() **/

# /**
#  */
sub recursiveCopy
{
  my ($src_dir, $hdfs_dir) = @_;
  my $file_count = 0;
  # - create the directory in HDFS
  &hdfsCommand('mkdir', $hdfs_dir);
  # - search $src_dir for files
  opendir(DH, $src_dir) or die("Error! Cannot open directory for reading: " . $src_dir);
  my @files = readdir(DH);
  closedir(DH);
  foreach my $file (@files)
  {
    # - skip dot prefix files
    if ($file !~ /^\./)
    {
      my $src_path = $src_dir . '/' . $file;
      # - recurse directories, remembering to extend HDFS dir too
      if (-d $src_path)
      {
        my $new_hdfs_dir = $hdfs_dir . '/' . $file;
        $file_count += &recursiveCopy($src_path, $new_hdfs_dir);
      }
      # - and use 'put' to copy files
      else
      {
        my $hdfs_path = $hdfs_dir . '/' . $file;
        &hdfsCommand('put', $src_path, $hdfs_path);
        $file_count++;
      }
    }
  }
  return $file_count;
}
# /** recursiveCopy() **/

# /** @function shellCommand
#  */
sub shellCommand
{
  my $cmd = shift(@_);
  my $output = '';
  &debugPrint($cmd);
  if (!$dry_run)
  {
    $output = `$cmd`;
  }
  return $output;
}
# /** shellCommand() **/

# /** @function urlCat
#  */
sub urlCat
{
  my $url = join('/', @_);
  return $url;
}
# /** urlCat() **/

# /**
#  */
sub dirIsEmpty
{
  my $dir = shift(@_);
  my @files;
  if (-e $dir)
  {
    opendir(DIR, $dir) or die $!;
    @files = grep { !m/\A\.{1,2}\Z/} readdir(DIR);
    closedir(DIR);
  }
  @files ? 0 : 1;
}
# /** dirIsEmpty() **/