1 | package g2futil;
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2 |
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3 |
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4 | BEGIN
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5 | {
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6 | if (!defined $ENV{'FEDORA_HOME'}) {
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7 | print STDERR "Error: Environment variable FEDORA_HOME not set.\n";
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8 | exit 1;
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9 | }
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10 |
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11 | my $fedora_client_bin = &FileUtils::filenameConcatenate($ENV{'FEDORA_HOME'},"client","bin");
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12 | &util::envvar_append("PATH",$fedora_client_bin);
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13 | }
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14 |
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15 | use strict;
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16 | use util;
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17 | use FileUtils;
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18 |
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19 | sub run_cmd_old
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20 | {
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21 | my ($cmd,$verbosity,$tolerate_error) = @_;
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22 |
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23 | if (($verbosity == 0)
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24 | || (defined $tolerate_error && ($tolerate_error eq "tolerate_error"))) {
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25 | if($ENV{'GSDLOS'} =~ /^windows$/i) {
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26 | $cmd .= " > nul";
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27 | } else {
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28 | $cmd .= " > /dev/null";
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29 | }
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30 | }
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31 |
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32 | if ($verbosity >= 2) {
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33 | print "Running command:\n";
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34 | print "$cmd\n";
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35 | }
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36 |
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37 | my $status = system($cmd);
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38 |
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39 | if ($verbosity >= 2) {
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40 | print "Exit status = ", $status/256, "\n";
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41 | }
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42 |
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43 | if ((!defined $tolerate_error) || ($tolerate_error ne "tolerate_error")) {
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44 | if ($status>0) {
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45 | print STDERR "Error executing:\n$cmd\n";
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46 | print STDERR "$!\n";
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47 | }
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48 | }
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49 |
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50 | return $status;
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51 | }
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52 |
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53 |
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54 | sub run_cmd
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55 | {
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56 | my ($prog,$arguments,$verbosity,$tolerate_error) = @_;
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57 |
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58 | my $cmd_status = undef;
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59 |
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60 | my $script_ext = ($ENV{'GSDLOS'} =~ m/^windows/) ? ".bat" : ".sh";
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61 |
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62 | if ($prog =~ m/^fedora-/ || $prog =~ m/^run[A-Z]*Client/) { # fedora or fedoragsearch script
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63 | $prog .= $script_ext;
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64 | }
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65 | if (($prog =~ m/.pl$/i) && ($ENV{'GSDLOS'} =~ m/^windows/)) {
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66 | $prog ="\"".&util::get_perl_exec()."\" -S $prog";
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67 | }
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68 |
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69 | my $cmd = "$prog $arguments";
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70 |
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71 | ### print "*** cmd = $cmd\n";
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72 |
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73 | if (open(CMD,"$cmd 2>&1 |"))
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74 | {
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75 | my $result = "";
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76 | my $line;
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77 | while (defined ($line = <CMD>))
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78 | {
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79 | $result .= $line;
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80 |
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81 | if ((!defined $tolerate_error) || ($tolerate_error ne "tolerate_error"))
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82 | {
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83 | print $line;
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84 | }
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85 |
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86 |
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87 | }
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88 |
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89 | close(CMD);
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90 |
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91 | $cmd_status = $?;
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92 |
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93 | if ($cmd_status == 0) {
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94 | # Check for any lines in result begining 'Error:'
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95 |
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96 | if ($result =~ m/^Error\s*:/m) {
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97 | # Fedora script generated an error, but did not exit
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98 | # with an error status => artificially raise one
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99 |
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100 | $cmd_status = -1;
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101 | }
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102 | }
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103 |
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104 | if ($cmd_status != 0) {
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105 |
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106 | if ((!defined $tolerate_error) || ($tolerate_error ne "tolerate_error"))
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107 | {
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108 | print STDERR "Error: processing command failed. Exit status $cmd_status\n";
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109 |
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110 | if ($verbosity >= 2) {
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111 | print STDERR " Command was: $cmd\n";
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112 | }
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113 | if ($verbosity >= 3) {
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114 | print STDERR "result: $result\n";
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115 | }
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116 |
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117 | }
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118 | }
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119 | }
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120 | else
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121 | {
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122 | print STDERR "Error: failed to execute $cmd\n";
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123 | }
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124 |
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125 |
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126 | return $cmd_status;
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127 | }
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128 |
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129 |
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130 | sub run_datastore_info
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131 | {
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132 | my ($pid,$options) = @_;
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133 |
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134 | my $verbosity = $options->{'verbosity'};
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135 |
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136 | my $hostname = $options->{'hostname'};
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137 | my $port = $options->{'port'};
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138 | my $username = $options->{'username'};
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139 | my $password = $options->{'password'};
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140 | my $protocol = $options->{'protocol'};
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141 |
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142 | my $prog = "fedora-dsinfo";
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143 | my $arguments = "$hostname $port $username $password $pid $protocol";
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144 | my $status = run_cmd($prog,$arguments,$verbosity,"tolerate_error");
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145 |
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146 | return $status;
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147 | }
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148 |
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149 | sub run_purge
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150 | {
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151 | my ($pid,$options) = @_;
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152 |
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153 | my $verbosity = $options->{'verbosity'};
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154 |
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155 | my $hostname = $options->{'hostname'};
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156 | my $port = $options->{'port'};
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157 | my $username = $options->{'username'};
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158 | my $password = $options->{'password'};
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159 | my $protocol = $options->{'protocol'};
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160 |
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161 | my $server = "$hostname:$port";
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162 |
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163 | my $prog = "fedora-purge";
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164 | my $arguments = "$server $username $password $pid $protocol";
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165 | $arguments .= " \\\n \"Automated_purge_by_g2f_script\"";
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166 |
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167 | my $status = run_cmd($prog,$arguments,$verbosity);
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168 |
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169 | return $status;
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170 | }
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171 |
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172 | # runs fedora gsearch's runRESTClient.sh: updateIndex deletePID <PID>
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173 | sub run_delete_from_index
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174 | {
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175 | my ($fedoragsearch_webapp,$pid,$options) = @_;
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176 |
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177 | my $verbosity = $options->{'verbosity'};
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178 |
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179 | my $hostname = $options->{'hostname'};
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180 | my $port = $options->{'port'};
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181 | my $username = $options->{'username'};
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182 | my $password = $options->{'password'};
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183 | my $protocol = $options->{'protocol'};
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184 |
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185 | my $server = "$hostname:$port";
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186 | #$ENV{'fgsUserName'} = $options->{'username'};
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187 | #$ENV{'fgsPassword'} = $options->{'password'};
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188 |
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189 | #my $prog = &FileUtils::filenameConcatenate($ENV{'FEDORA_GSEARCH'}, "runRESTClient.sh");
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190 | my $prog = &FileUtils::filenameConcatenate($fedoragsearch_webapp, "client", "runRESTClient.sh");
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191 |
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192 | my $gsearch_commands = "updateIndex deletePid"; # deletePID
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193 | my $arguments = "$server $gsearch_commands $pid";
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194 |
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195 | my $status = run_cmd($prog,$arguments,$verbosity);
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196 |
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197 | return $status;
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198 | }
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199 |
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200 | # runs fedora gsearch's runRESTClient.sh: updateIndex fromPID <PID>
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201 | sub run_update_index
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202 | {
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203 | my ($fedoragsearch_webapp,$pid,$options) = @_;
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204 |
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205 | my $verbosity = $options->{'verbosity'};
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206 |
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207 | my $hostname = $options->{'hostname'};
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208 | my $port = $options->{'port'};
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209 | my $username = $options->{'username'};
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210 | my $password = $options->{'password'};
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211 | my $protocol = $options->{'protocol'};
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212 |
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213 | my $server = "$hostname:$port";
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214 | #$ENV{'fgsUserName'} = $options->{'username'};
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215 | #$ENV{'fgsPassword'} = $options->{'password'};
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216 |
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217 | #my $prog = &FileUtils::filenameConcatenate($ENV{'FEDORA_GSEARCH'}, "runRESTClient.sh");
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218 | my $prog = &FileUtils::filenameConcatenate($fedoragsearch_webapp, "client", "runRESTClient.sh");
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219 |
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220 | my $gsearch_commands = "updateIndex fromPid"; # fromPID
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221 | my $arguments = "$server $gsearch_commands $pid";
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222 |
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223 | my $status = run_cmd($prog,$arguments,$verbosity);
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224 |
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225 | return $status;
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226 | }
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227 |
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228 | sub gsearch_webapp_folder
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229 | {
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230 | my $fedoragsearch_webapp = undef;
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231 |
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232 | # if GS3, first look for a fedoragsearch webapp installed in Greenstone's tomcat
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233 | if(defined $ENV{'GSDL3SRCHOME'}) {
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234 | $fedoragsearch_webapp = &FileUtils::filenameConcatenate($ENV{'GSDL3SRCHOME'},"packages","tomcat","webapps","fedoragsearch");
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235 | return $fedoragsearch_webapp if (&FileUtils::directoryExists($fedoragsearch_webapp));
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236 | }
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237 |
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238 | # next look for a fedoragsearch webapp installed in Fedora's tomcat
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239 | if(defined $ENV{'FEDORA_HOME'}) {
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240 | $fedoragsearch_webapp = &FileUtils::filenameConcatenate($ENV{'FEDORA_HOME'},"tomcat","webapps","fedoragsearch");
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241 | return $fedoragsearch_webapp if (&FileUtils::directoryExists($fedoragsearch_webapp));
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242 | }
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243 |
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244 | ## check for a user-defined $ENV{'FEDORA_GSEARCH'} variable first, which points to a gsearch webapp folder??
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245 |
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246 | # assume no fedoragsearch
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247 | return $fedoragsearch_webapp; # undef
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248 | }
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249 |
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250 |
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251 | sub run_ingest
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252 | {
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253 | my ($docmets_filename,$options) = @_;
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254 |
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255 | my $verbosity = $options->{'verbosity'};
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256 |
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257 | my $hostname = $options->{'hostname'};
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258 | my $port = $options->{'port'};
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259 | my $username = $options->{'username'};
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260 | my $password = $options->{'password'};
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261 | my $protocol = $options->{'protocol'};
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262 |
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263 | my $server = "$hostname:$port";
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264 |
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265 | my $prog = "fedora-ingest";
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266 |
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267 | my $type = undef;
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268 |
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269 | if ($ENV{'FEDORA_VERSION'} =~ m/^2/) { # checking if major version is 2
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270 | $type = "metslikefedora1";
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271 | }
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272 | else {
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273 | $type = "info:fedora/fedora-system:METSFedoraExt-1.1";
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274 | }
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275 |
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276 | my $arguments = "file \"$docmets_filename\" $type $server $username $password $protocol";
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277 | $arguments .= " \\\n \"Automated_purge_by_g2f_script\"";
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278 |
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279 | my $status = run_cmd($prog,$arguments,$verbosity);
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280 |
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281 | return $status;
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282 | }
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283 |
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284 |
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285 | sub rec_get_all_hash_dirs
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286 | {
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287 | my ($full_dir,$all_dirs) = @_;
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288 |
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289 | if (opendir(DIR, $full_dir)) {
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290 | my @sub_dirs = grep { ($_ !~ /^\./) && (-d &FileUtils::filenameConcatenate($full_dir,$_)) } readdir(DIR);
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291 | closedir DIR;
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292 |
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293 | my @hash_dirs = grep { $_ =~ m/\.dir$/ } @sub_dirs;
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294 | my @rec_dirs = grep { $_ !~ m/\.dir$/ } @sub_dirs;
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295 |
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296 | foreach my $hd (@hash_dirs) {
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297 | my $full_hash_dir = &FileUtils::filenameConcatenate($full_dir,$hd);
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298 | push(@$all_dirs,$full_hash_dir);
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299 | }
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300 |
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301 | foreach my $rd (@rec_dirs) {
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302 | my $full_rec_dir = &FileUtils::filenameConcatenate($full_dir,$rd);
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303 | rec_get_all_hash_dirs($full_rec_dir,$all_dirs);
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304 | }
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305 | }
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306 | }
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307 |
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308 | sub get_all_hash_dirs
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309 | {
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310 | my ($start_dir,$maxdocs) = @_;
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311 |
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312 | my @all_dirs = ();
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313 | rec_get_all_hash_dirs($start_dir,\@all_dirs);
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314 |
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315 | if ((defined $maxdocs) && ($maxdocs ne "")) {
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316 | my @maxdoc_dirs = ();
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317 | for (my $i=0; $i<$maxdocs; $i++) {
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318 | push(@maxdoc_dirs,shift(@all_dirs));
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319 | }
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320 | @all_dirs = @maxdoc_dirs;
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321 | }
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322 |
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323 | return @all_dirs;
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324 | }
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325 |
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326 | sub get_hash_id
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327 | {
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328 | my ($hash_dir) = @_;
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329 |
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330 | my $hash_id = undef;
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331 |
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332 | my $docmets_filename = &FileUtils::filenameConcatenate($hash_dir,"docmets.xml");
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333 |
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334 | if (open(DIN,"<$docmets_filename"))
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335 | {
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336 | while (defined (my $line = <DIN>))
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337 | {
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338 | if ($line =~ m/<dc:identifier>(.*?)<\/dc:identifier>/)
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339 | {
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340 | $hash_id = $1;
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341 | last;
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342 | }
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343 | }
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344 |
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345 | close(DIN);
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346 | }
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347 | else
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348 | {
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349 | print STDERR "Warning: Unable to open \"$docmets_filename\"\n";
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350 | }
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351 |
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352 | return $hash_id;
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353 |
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354 | }
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355 |
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356 |
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357 | # Subroutine to write the gsdl.xml file in FEDORA_HOME/tomcat/conf/Catalina/<host/localhost>/
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358 | # This xml file will tell Fedora where to find the parent folder of the GS collect dir
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359 | # so that it can obtain the FedoraMETS files for ingestion.
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360 | # It depends on the Fedora server being on the same machine as the Greenstone server that
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361 | # this code is part of.
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362 | sub write_gsdl_xml_file
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363 | {
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364 | my ($fedora_host, $collect_dir, $options) = @_;
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365 | my $verbosity = $options->{'verbosity'};
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366 | my $hostname = $options->{'hostname'};
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367 | my $port = $options->{'port'};
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368 | my $protocol = $options->{'protocol'};
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369 |
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370 | print STDERR "Ensuring that a correct gsdl.xml file exists on the Fedora server end\n";
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371 | # The top of this file has already made sure that FEDORA_HOME is set, but for GS3
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372 | # CATALINA_HOME is set to GS' own tomcat. Since we'll be working with fedora, we need
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373 | # to temporarily set CATALINA_HOME to fedora's tomcat. (Catalina is undefined for GS2.)
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374 | my $gs_catalina_home = $ENV{'CATALINA_HOME'} if defined $ENV{'CATALINA_HOME'};
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375 | $ENV{'CATALINA_HOME'} = &FileUtils::filenameConcatenate($ENV{'FEDORA_HOME'}, "tomcat");
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376 |
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377 | # 1. Find out which folder to write to: fedora_host or localhost
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378 | # whichever contains fedora.xml is the one we want (if none, exit with error value?)
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379 | my $fedora_home = $ENV{'FEDORA_HOME'};
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380 | my $base_path = &FileUtils::filenameConcatenate($fedora_home, "tomcat", "conf", "Catalina");
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381 |
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382 | my $host_path = &FileUtils::filenameConcatenate($base_path, $fedora_host);
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383 | my $xmlFile = &FileUtils::filenameConcatenate($host_path, "fedora.xml");
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384 | if (!-e $xmlFile) {
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385 | # check if the folder localhost contains fedoraXML
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386 | $host_path = &FileUtils::filenameConcatenate($base_path, "localhost");
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387 | $xmlFile = &FileUtils::filenameConcatenate($host_path, "fedora.xml");
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388 | if(!-e $xmlFile) {
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389 | # try putting gsdl in this folder, but still print a warning
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390 | print STDERR "$host_path does not contain file fedora.xml. Hoping gsdl.xml belongs there anyway\n";
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391 | }
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392 | }
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393 |
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394 | # 2. Construct the string we are going write to the gsdl.xml file
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395 | # a. get the parent directory of collect_dir by removinbg the word
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396 | # "collect" from it and any optional OS-type slash at the end.
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397 | # (Path slash direction does not matter here.)
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398 | my $collectParentDir = $collect_dir;
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399 | $collectParentDir =~ s/collect(\/|\\)?//;
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400 |
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401 | # b. Use the collectParentDir to create the contents of gsdl.xml
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402 | my $greenstone_url_prefix = &util::get_greenstone_url_prefix(); # would have the required slash at front
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403 | my $gsdlXMLcontents = "<?xml version='1.0' encoding='utf-8'?>\n<Context docBase=\"";
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404 | $gsdlXMLcontents = $gsdlXMLcontents.$collectParentDir."\" path=\"$greenstone_url_prefix\"></Context>";
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405 |
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406 | # 3. If there is already a gsdl.xml file in host_path, compare the string we
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407 | # want to write with what is already in there. If they're the same, we can return
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408 | $xmlFile = &FileUtils::filenameConcatenate($host_path, "gsdl.xml");
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409 | if(-e $xmlFile) {
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410 | # such a file exists, so read the contents
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411 | unless(open(FIN, "<$xmlFile")) {
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412 | print STDERR "g2f-import.pl: Unable to open existing $xmlFile for comparing...Recoverable. $!\n";
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413 | # doesn't matter, we'll just overwrite it then
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414 | }
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415 | my $xml_contents;
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416 | {
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417 | local $/ = undef; # Read entire file at once
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418 | $xml_contents = <FIN>; # Now file is read in as one single 'line'
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419 | }
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420 | close(FIN); # close the file
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421 | if($xml_contents eq $gsdlXMLcontents) {
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422 | print STDERR "Fedora links to the FLI import folder through gsdl.xml.\n";
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423 | # it already contains what we want, we're done
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424 | return "gsdl.xml";
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425 | }
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426 | }
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427 |
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428 | # 4. If we're here, the contents of gsdl.xml need to be updated:
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429 | # a. First stop the fedora server
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430 | my $script_ext = ($ENV{'GSDLOS'} =~ m/^windows/) ? ".bat" : ".sh";
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431 | my $stop_tomcat = &FileUtils::filenameConcatenate($fedora_home, "tomcat", "bin", "shutdown".$script_ext);
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432 | # execute the command
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433 | $! = 0; # does this initialise the return value?
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434 | my $status = system($stop_tomcat);
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435 | if ($status!=0) { # to get the actual exit value, divide by 256, but not useful here
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436 | # possible tomcat was already stopped - it's not the end of the world
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437 | print STDERR "Failed to stop Fedora server. Perhaps it was not running. $!\n";
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438 | print "Exit status = ", $status/256, "\n";
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439 | }
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440 |
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441 | # b. overwrite the file that has outdated contents with the contents we just constructed
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442 | unless(open(FOUT, ">$xmlFile")) { # create or overwrite gsdl.xml file
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443 | die "g2f-import.pl: Unable to open $xmlFile for telling Fedora where the collect dir is...ERROR: $!\n";
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444 | }
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445 | # write out the updated contents and close the file
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446 | print FOUT $gsdlXMLcontents;
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447 | close(FOUT);
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448 |
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449 | # c. Restart the fedora server
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450 | my $start_tomcat = &FileUtils::filenameConcatenate($fedora_home, "tomcat", "bin", "startup".$script_ext);
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451 | $! = 0;
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452 | $status = system($start_tomcat);
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453 | if ($status!=0) {
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454 | print STDERR "Failed to restart the Fedora server... ERROR: $!\n";
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455 | print "Exit status = ", $status/256, "\n";
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456 | }
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457 |
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458 | # reset CATALINA_HOME to GS' Tomcat (it is undefined for GS2 since GS2 has no tomcat):
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459 | $ENV{'CATALINA_HOME'} = $gs_catalina_home if defined $gs_catalina_home;
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460 |
|
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461 | # the wget binary is dependent on the gnomelib_env (particularly lib/libiconv2.dylib) being set, particularly on Mac Lions (android too?)
|
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462 | &util::set_gnomelib_env(); # this will set the gnomelib env once for each subshell launched, by first checking if GEXTGNOME is not already set
|
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463 |
|
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464 | # Starting up the Fedora server takes a long time. We need to wait for the server to be
|
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465 | # ready before import can continue, because g2f-import relies on an up-and-running Fedora
|
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466 | # server to purge the collection from it while g2f-build.pl needs a ready Fedora server
|
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467 | # in order to make it ingest the FedoraMETS. Sleeping is not sufficient (#sleep 10;) since
|
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468 | # the subsequent steps depend on a proper server restart.
|
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469 | # Dr Bainbridge's suggestion: test the server is ready with a call to wget.
|
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470 |
|
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471 | # Wget tries to retrieve the fedora search page (protocol://host:port/fedora/search)
|
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472 | # 20 times, waiting 3 seconds between each failed attempt. If it ultimately fails, we
|
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473 | # print a message to the user.
|
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474 | # The wget --spider option makes it check that the page is merely there rather than
|
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475 | # downloading it (see http://www.gnu.org/software/wget/manual/wget.html#Download-Options)
|
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476 | # -q is for quiet, --tries for the number of retries, --waitretry is the number of seconds
|
---|
477 | # between each attempt. Usually wget returns the contents of the page, but in our case it
|
---|
478 | # will return 0 for success since we are not downloading.
|
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479 |
|
---|
480 | print STDERR "Fedora server restarted. Waiting for it to become ready...\n";
|
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481 | #print STDERR "****$protocol://$hostname:$port/fedora/search\n";
|
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482 | $! = 0;
|
---|
483 | #my $fedoraServerReady = system("wget -q --spider --waitretry=10 --tries=20 $protocol://$hostname:$port/fedora/search");
|
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484 |
|
---|
485 | # The retries above won't work if the server isn't running:
|
---|
486 | # http://www.gnu.org/software/wget/manual/wget.html
|
---|
487 | #'--tries=number'
|
---|
488 | # Set number of retries to number. Specify 0 or 'inf' for infinite retrying. The default is to retry 20 times,
|
---|
489 | # with the exception of fatal errors like "connection refused" or "not found" (404), which ARE NOT RETRIED.
|
---|
490 |
|
---|
491 | # retry fedora server every second for a total of 20 times until the server is ready
|
---|
492 | my $fedoraServerReady = 0;
|
---|
493 | my $count = 0;
|
---|
494 | do {
|
---|
495 | $fedoraServerReady = system("wget -q --spider $protocol://$hostname:$port/fedora/search");
|
---|
496 | if($fedoraServerReady != 0) {
|
---|
497 | sleep(1);
|
---|
498 | $count++;
|
---|
499 | #print STDERR "$count second(s)\n";
|
---|
500 | }
|
---|
501 | } while($fedoraServerReady != 0 && $count < 20);
|
---|
502 |
|
---|
503 | if($fedoraServerReady != 0) {
|
---|
504 | print STDERR "Fedora server is still not ready... ERROR: $!\n";
|
---|
505 | print "Exit status = ", $fedoraServerReady/256, "\n";
|
---|
506 | die "Exiting....\n";
|
---|
507 | }
|
---|
508 |
|
---|
509 | # return some indication that things went well
|
---|
510 | return "gsdl.xml";
|
---|
511 | }
|
---|
512 |
|
---|
513 |
|
---|
514 | 1;
|
---|