[33778] | 1 | package org.greenstone.atea;
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| 2 |
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[33799] | 3 | import java.io.BufferedReader;
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| 4 | import java.io.BufferedWriter;
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| 5 | import java.io.File;
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| 6 | import java.io.FileReader;
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| 7 | import java.io.FileWriter;
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| 8 | import java.io.Writer;
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[33778] | 9 |
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| 10 | import java.util.HashMap;
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| 11 | import java.util.LinkedList;
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| 12 | import java.util.List;
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| 13 | import java.util.Map;
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| 14 |
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[33799] | 15 | import org.apache.commons.csv.*;
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| 16 | import org.apache.log4j.Logger;
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| 17 |
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| 18 | // Google's gson imports for parsing any kind of json
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| 19 | import com.google.gson.JsonArray;
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| 20 | import com.google.gson.JsonElement;
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| 21 | import com.google.gson.JsonObject;
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| 22 | import com.google.gson.JsonParser;
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| 23 |
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[33778] | 24 | // For working with GeoJSON's Simple Features in Java
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[33794] | 25 | import mil.nga.sf.geojson.Feature;
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| 26 | import mil.nga.sf.geojson.FeatureCollection;
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[33790] | 27 | import mil.nga.sf.geojson.FeatureConverter;
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[33778] | 28 | import mil.nga.sf.geojson.Geometry;
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| 29 | import mil.nga.sf.geojson.MultiPoint;
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[33794] | 30 | import mil.nga.sf.geojson.Polygon;
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[33778] | 31 | import mil.nga.sf.geojson.Position;
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| 32 |
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| 33 |
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[33790] | 34 | /** Simple Features GeoJSON Java
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| 35 | * https://ngageoint.github.io/simple-features-geojson-java/ - liks to API and more
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| 36 | *
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| 37 | * https://mvnrepository.com/artifact/mil.nga.sf/sf-geojson (https://github.com/ngageoint/simple-features-geojson-java/)
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| 38 | *
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| 39 | * Also need the basic data types used by the Geometry objects above:
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| 40 | * https://mvnrepository.com/artifact/mil.nga/sf (https://github.com/ngageoint/simple-features-java)
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| 41 | *
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| 42 | * Further helper jars needed (because of encountering the exception documented at
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| 43 | * stackoverflow.com/questions/36278293/java-lang-classnotfoundexception-com-fasterxml-jackson-core-jsonprocessingexcep/36279872)
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| 44 | * https://mvnrepository.com/artifact/com.fasterxml.jackson.core/jackson-core/2.10.0
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| 45 | * https://mvnrepository.com/artifact/com.fasterxml.jackson.core/jackson-databind
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| 46 | * https://mvnrepository.com/artifact/com.fasterxml.jackson.core/jackson-annotations/2.10.0
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| 47 | */
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[33778] | 48 |
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| 49 | /**
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[33790] | 50 | * This class needs the gson library, and now the sf(-2.02).jar and sf-geojson(-2.02).jar files too
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| 51 | * to create and store Simple Features geo json objects with Java.
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| 52 | * I copied the gson jar file from GS3.
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[33778] | 53 | *
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| 54 | * TO COMPILE:
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| 55 | * maori-lang-detection/src$
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| 56 | * javac -cp ".:../conf:../lib/*" org/greenstone/atea/CountryCodeCountsMapData.java
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| 57 | *
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| 58 | * TO RUN:
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| 59 | * maori-lang-detection/src$
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| 60 | * java -cp ".:../conf:../lib/*" org/greenstone/atea/CountryCodeCountsMapData ../mongodb-data/countrycodes.json ../mongodb-data/counts.json
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| 61 | *
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| 62 | */
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| 63 | public class CountryCodeCountsMapData {
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| 64 | static Logger logger = Logger.getLogger(org.greenstone.atea.CountryCodeCountsMapData.class.getName());
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| 65 |
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[33790] | 66 | //Map<String, JsonObject> countryToJsonMap;
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[33778] | 67 | JsonArray countryCodesJsonArray;
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| 68 | JsonArray countryCountsJsonArray;
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[33790] | 69 |
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| 70 | // North-central Antarctica coords
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| 71 | private final double ANTARCTICA_LNG = 57.0d;
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| 72 | private final double ANTARCTICA_LAT = -70.0d;
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| 73 | // For EU coords, spot in Atlantic Ocean close to western European coast.
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| 74 | private final double EU_LNG = -20.0d;
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| 75 | private final double EU_LAT = 50.0d;
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[33778] | 76 |
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| 77 | public CountryCodeCountsMapData(String countryCoordsJSONFile, String countryCountsJSONFile) throws Exception {
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| 78 |
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| 79 | // map of country codes to lat, lng json for that country code
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[33790] | 80 | Map<String, JsonObject> countryToJsonMap = new HashMap<String, JsonObject>();
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[33778] | 81 |
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[33790] | 82 | // Parse json file of country codes and put into a JsonArray.
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| 83 | // then put into map of each country code to its JsonObject.
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[33778] | 84 | countryCodesJsonArray = parseJSONFile(countryCoordsJSONFile);
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| 85 | for(JsonElement obj : countryCodesJsonArray) {
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| 86 | JsonObject countryCodeJson = obj.getAsJsonObject();
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| 87 | countryToJsonMap.put(countryCodeJson.get("country").getAsString(), countryCodeJson);
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| 88 | }
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| 89 |
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[33790] | 90 | // Parse json file of country code counts
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| 91 | // Then for each JsonObject in this file,
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| 92 | // find a match on its country code in the map created above to get a country code JsonObject
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| 93 | // Get the longitude and latitude of the JsonObject that matched that country code.
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| 94 | // Add this lng,lat location information to the current JsonObject from the counts file.
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[33778] | 95 | countryCountsJsonArray = parseJSONFile(countryCountsJSONFile);
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| 96 |
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| 97 | for(JsonElement obj : countryCountsJsonArray) {
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| 98 | JsonObject json = obj.getAsJsonObject();
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[33796] | 99 | String countryCode = json.get("_id").getAsString().toUpperCase();
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| 100 | // set the property back as uppercase and with property name "countrycode" instead of "_id"
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| 101 | json.remove("_id");
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| 102 | json.addProperty("countrycode", countryCode);
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| 103 |
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[33794] | 104 | int count = (int)json.get("count").getAsDouble();
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[33778] | 105 |
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[33790] | 106 | //logger.info("Got country code: " + countryCode);
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| 107 | //logger.info(" count: " + count);
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[33778] | 108 |
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| 109 | // locate in countryCode map
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| 110 | JsonObject countryCodeJson = countryToJsonMap.get(countryCode);
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| 111 |
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[33790] | 112 | if(countryCodeJson != null) {
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| 113 | //logger.info("Found in map: " + countryCodeJson.toString());
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| 114 |
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| 115 | // for geojson, want longitude then latitude
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| 116 | Double lng = countryCodeJson.get("longitude").getAsDouble();
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| 117 | Double lat = countryCodeJson.get("latitude").getAsDouble();
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| 118 | //logger.info("long: " + Double.toString(lng) + ", lat: " + Double.toString(lat));
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[33794] | 119 | String countryName = countryCodeJson.get("name").getAsString();
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[33790] | 120 |
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| 121 | // let's add lat and lng fields to countryCounts object
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[33794] | 122 | json.addProperty("lng", lng); // adds Number: https://javadoc.io/static/com.google.code.gson/gson/2.8.5/com/google/gson/JsonObject.html
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[33790] | 123 | json.addProperty("lat", lat);
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[33794] | 124 | json.addProperty("region", countryName);
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| 125 |
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[33790] | 126 | } else {
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| 127 | logger.info("No geolocation info found for country code " + countryCode);
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| 128 | if(countryCode.equals("EU")) {
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| 129 | //logger.info("Unlisted country code: EU");
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| 130 | // add lat and lng for Europe
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| 131 | json.addProperty("lng", EU_LNG);
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[33794] | 132 | json.addProperty("lat", EU_LAT);
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| 133 | json.addProperty("region", "Europe");
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[33790] | 134 | }
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| 135 | else if(countryCode.equals("UNKNOWN")) {
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| 136 | //logger.info("Unlisted country code: UNKNOWN");
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| 137 | // add lat and lng for Antarctica
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| 138 | json.addProperty("lng", ANTARCTICA_LNG);
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| 139 | json.addProperty("lat", ANTARCTICA_LAT);
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[33794] | 140 | json.addProperty("region", "UNKNOWN");
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[33790] | 141 | } else {
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| 142 | logger.error("ERROR: entirely unknown country code: " + countryCode);
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| 143 | }
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| 144 | }
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[33778] | 145 | }
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| 146 |
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| 147 | }
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| 148 |
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[33790] | 149 | /** Convert mongodb tabular output of json records stored in the given file
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| 150 | * into a JsonArray.
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| 151 | */
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[33778] | 152 | public JsonArray parseJSONFile(String filename) throws Exception {
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| 153 | JsonArray jsonArray = null;
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| 154 | // read into string
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| 155 | try (
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| 156 | BufferedReader reader = new BufferedReader(new FileReader(filename));
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| 157 | ) {
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| 158 | StringBuilder str = //new StringBuilder();
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| 159 | new StringBuilder("[");
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| 160 | String line;
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| 161 | while((line = reader.readLine()) != null) {
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| 162 | line = line.replaceAll("/\\* [^\\/]* \\*/", "");
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| 163 | str.append(line);
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| 164 | if(line.endsWith("}")) {
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| 165 | str.append(",\n");
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| 166 | }
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| 167 | }
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| 168 | // replace last comma with closing bracket
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| 169 | String fileContents = str.substring(0, str.length()-2) + "]";
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[33790] | 170 |
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| 171 | //System.err.println("Got file:\n" + fileContents);
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| 172 |
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[33778] | 173 | // https://stackoverflow.com/questions/2591098/how-to-parse-json-in-java
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| 174 | jsonArray = new JsonParser().parse(fileContents).getAsJsonArray();
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| 175 |
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| 176 | } catch(Exception e) {
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| 177 | throw e;
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| 178 | }
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| 179 |
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| 180 |
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| 181 | return jsonArray;
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| 182 | }
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| 183 |
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| 184 | /**
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| 185 | * Reading
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| 186 | * https://www.here.xyz/api/concepts/geojsonbasics/
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| 187 | * https://ngageoint.github.io/simple-features-geojson-java/docs/api/
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| 188 | *
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| 189 | * https://stackoverflow.com/questions/55621480/cant-access-coordinates-member-of-geojson-feature-collection
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| 190 | *
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| 191 | * Downloaded geojson simple features' jar file from maven, but it didn't work:
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| 192 | * a more private version of MultiPoint.java is not included in the jar file (there's only
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| 193 | * mil.nga.sf.geojson.MultiPoint , whereas
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| 194 | * mil.nga.sf.MultiPoint is missing
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| 195 | *
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| 196 | * This seems to have gone wrong at
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| 197 | * https://github.com/ngageoint/simple-features-geojson-java/tree/master/src/main/java/mil/nga/sf
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| 198 | * but the one at
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| 199 | * https://github.com/ngageoint/simple-features-java/tree/master/src/main/java/mil/nga/sf
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| 200 | * has it. So I've been trying to build that, but don't have the correct version of maven.
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| 201 | */
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[33790] | 202 | public Geometry toMultiPointGeoJson() {
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| 203 | //System.err.println("toGeoJSON() is not yet implemented.");
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[33778] | 204 |
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| 205 | List<Position> points = new LinkedList<Position>();
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| 206 |
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[33794] | 207 | for(JsonElement obj : this.countryCountsJsonArray) {
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[33778] | 208 | JsonObject json = obj.getAsJsonObject();
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[33790] | 209 | Double lng = json.get("lng").getAsDouble();
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| 210 | Double lat = json.get("lat").getAsDouble();
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[33778] | 211 |
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| 212 | Position point = new Position(lng, lat);
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| 213 | points.add(point);
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| 214 | }
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[33790] | 215 |
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[33778] | 216 | Geometry multiPoint = new MultiPoint(points);
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| 217 |
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| 218 | return multiPoint;
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[33790] | 219 | }
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| 220 |
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[33794] | 221 | // https://javadoc.io/static/com.google.code.gson/gson/2.8.5/index.html
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| 222 | public FeatureCollection toFeatureCollection() {
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| 223 | final int HISTOGRAM_WIDTH = 4;
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| 224 |
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| 225 | FeatureCollection featureCollection = new FeatureCollection();
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| 226 |
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| 227 | for(JsonElement obj : this.countryCountsJsonArray) {
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| 228 | JsonObject json = obj.getAsJsonObject();
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| 229 |
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[33796] | 230 | String countryCode = json.get("countrycode").getAsString();
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[33794] | 231 | String region = json.get("region").getAsString();
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| 232 | int count = json.get("count").getAsInt();
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[33790] | 233 |
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[33794] | 234 | // make a histogram for each country
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| 235 | Geometry rectangle = this.toPolygon(json, count, HISTOGRAM_WIDTH);
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| 236 |
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| 237 | Feature countryFeature = new Feature(rectangle);
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| 238 | Map<String, Object> featureProperties = new HashMap<String, Object>();
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| 239 | featureProperties.put("count", new Integer(count));
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| 240 | featureProperties.put("code", countryCode);
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| 241 | featureProperties.put("region", region);
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| 242 | countryFeature.setProperties(featureProperties);
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| 243 |
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| 244 | featureCollection.addFeature(countryFeature);
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| 245 | }
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| 246 |
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| 247 | return featureCollection;
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| 248 | }
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| 249 |
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| 250 | // create rectangular "histogram" for each country code
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| 251 | private Geometry toPolygon(JsonObject json, int count, int HISTOGRAM_WIDTH) {
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| 252 | int half_width = HISTOGRAM_WIDTH/2;
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| 253 | double vertical_factor = 1.0;
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| 254 |
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| 255 | Double lng = json.get("lng").getAsDouble();
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| 256 | Double lat = json.get("lat").getAsDouble();
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| 257 |
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[33796] | 258 | String countryCode = json.get("countrycode").getAsString();
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[33794] | 259 |
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| 260 |
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| 261 | //create the 4 corners of the rectangle
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| 262 | // West is negative, east is positive, south is negative, north is positive
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| 263 | // See http://www.learnz.org.nz/sites/learnz.org.nz/files/lat-long-geo-data-01_0.jpg
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[33796] | 264 | // But since the histograms grow vertically/northwards and we can't go past a latitude of 90,
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| 265 | // to compensate, we increase the width of the histograms by the same factor as our inability
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| 266 | // to grow northwards.
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| 267 | Double north = lat + (vertical_factor * count);
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| 268 | while (north > 90) {
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| 269 | // recalculate north after decreasing histogram's vertical growth
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| 270 | // by the same factor as we increase its width
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| 271 | vertical_factor = vertical_factor/2.0;
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| 272 | half_width = 2 * half_width;
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| 273 | north = lat + (vertical_factor * count);
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| 274 | }
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[33794] | 275 | Double east = lng + half_width;
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| 276 | Double west = lng - half_width;
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| 277 | Double south = lat;
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[33796] | 278 |
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| 279 | List<List<Position>> outerList = new LinkedList<List<Position>>();
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| 280 | List<Position> points = new LinkedList<Position>();
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| 281 | outerList.add(points);
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| 282 |
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| 283 |
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[33794] | 284 | points.add(new Position(west, south)); // Position(lng, lat) not Position(lat, lng)
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| 285 | points.add(new Position(west, north));
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| 286 | points.add(new Position(east, north));
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| 287 | points.add(new Position(east, south));
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| 288 |
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| 289 |
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| 290 | Geometry rectangle = new Polygon(outerList);
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| 291 |
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| 292 | // Coords: a List of List of Positions, see https://ngageoint.github.io/simple-features-geojson-java/docs/api/
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| 293 | // https://www.here.xyz/api/concepts/geojsonbasics/#polygon
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| 294 |
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| 295 | return rectangle;
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| 296 | }
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| 297 |
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[33790] | 298 | public String writeMultiPointGeoJsonToFile(File folder) {
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| 299 | final String filename = "multipoint.json";
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| 300 | File outFile = new File(folder, filename);
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| 301 |
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| 302 | Geometry geometry = this.toMultiPointGeoJson();
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| 303 | String multiPointGeojsonString = FeatureConverter.toStringValue(geometry);
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| 304 | System.err.println("\nMap data as MultiPoint geometry:\n" + multiPointGeojsonString + "\n");
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| 305 | try (
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| 306 | Writer writer = new BufferedWriter(new FileWriter(outFile));
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| 307 | ) {
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| 308 |
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| 309 | // Some basic re-formatting for some immediate legibility
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| 310 | // But pasting the contents of the file (or the System.err output above)
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| 311 | // directly into http://geojson.tools/ will instantly reformat the json perfectly anyway.
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| 312 | multiPointGeojsonString = multiPointGeojsonString.replace("[[", "\n[\n\t[");
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| 313 | multiPointGeojsonString = multiPointGeojsonString.replace("],[", "],\n\t[");
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| 314 | multiPointGeojsonString = multiPointGeojsonString.replace("]]", "]\n]");
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| 315 |
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| 316 | writer.write(multiPointGeojsonString + "\n");
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| 317 | } catch(Exception e) {
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| 318 | logger.error("Unable to write multipoint geojson:\n**********************");
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| 319 | logger.error(multiPointGeojsonString);
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| 320 | logger.error("**********************\ninto file " + outFile.getAbsolutePath());
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| 321 | logger.error(e.getMessage(), e);
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| 322 | }
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| 323 |
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| 324 | return outFile.getAbsolutePath();
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[33778] | 325 |
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| 326 | }
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| 327 |
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[33794] | 328 | public String writeFeaturesGeoJsonToFile(File folder) {
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| 329 | final String filename = "geojson-features.json";
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| 330 | File outFile = new File(folder, filename);
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| 331 |
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| 332 | FeatureCollection featureColl = this.toFeatureCollection();
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| 333 | String featuresGeojsonString = FeatureConverter.toStringValue(featureColl);
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| 334 | System.err.println("\nMap data as featurecollection:\n" + featuresGeojsonString + "\n");
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| 335 | try (
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| 336 | Writer writer = new BufferedWriter(new FileWriter(outFile));
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| 337 | ) {
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| 338 |
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| 339 | writer.write(featuresGeojsonString + "\n");
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| 340 | } catch(Exception e) {
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| 341 | logger.error("Unable to write multipoint geojson:\n**********************");
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| 342 | logger.error(featuresGeojsonString);
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| 343 | logger.error("**********************\ninto file " + outFile.getAbsolutePath());
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| 344 | logger.error(e.getMessage(), e);
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| 345 | }
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| 346 |
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| 347 | return outFile.getAbsolutePath();
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| 348 |
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| 349 | }
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| 350 |
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[33778] | 351 |
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[33800] | 352 | public int getTotalCount() {
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| 353 | int total = 0;
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| 354 | for(JsonElement obj : this.countryCountsJsonArray) {
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| 355 | JsonObject json = obj.getAsJsonObject();
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| 356 | int count = json.get("count").getAsInt();
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| 357 | total += count;
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| 358 | }
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| 359 | return total;
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| 360 | }
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| 361 |
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| 362 |
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[33790] | 363 | // Unfinished and unused
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[33778] | 364 | public void parseCSVFile(String filename) throws Exception {
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| 365 | File csvData = new File(filename);
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| 366 | CSVParser parser = CSVParser.parse(csvData, java.nio.charset.Charset.forName("US-ASCII"), CSVFormat.RFC4180);
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| 367 | for (CSVRecord csvRecord : parser) {
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[33790] | 368 | logger.info("Got record: " + csvRecord.toString());
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[33778] | 369 | }
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| 370 | }
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| 371 |
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| 372 | public static void printUsage() {
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| 373 | System.err.println("CountryCodeCountsMapData countrycodes.json counts.json");
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| 374 | }
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| 375 |
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| 376 | public static void main(String args[]) {
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| 377 | if(args.length != 2) {
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| 378 | printUsage();
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| 379 | System.exit(-1);
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| 380 | }
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[33790] | 381 |
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[33778] | 382 | try {
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[33790] | 383 | File countsFile = new File(args[1]);
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| 384 | File parentFolder = countsFile.getParentFile().getCanonicalFile(); // canonical resolves any .. and . in path
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| 385 |
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[33778] | 386 | CountryCodeCountsMapData mapData = new CountryCodeCountsMapData(args[0], args[1]);
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[33790] | 387 |
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[33794] | 388 | String multipointOutFileName = mapData.writeMultiPointGeoJsonToFile(parentFolder);
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| 389 | String featuresOutFileName = mapData.writeFeaturesGeoJsonToFile(parentFolder);
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[33800] | 390 |
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[33794] | 391 | System.err.println("***********\nWrote mapdata to files " + multipointOutFileName
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| 392 | + " and " + featuresOutFileName);
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[33799] | 393 | System.err.println("You can paste the geojson contents of either of these files into the "
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| 394 | + "editor at http://geojson.tools/ to see the data arranged on a world map");
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[33794] | 395 |
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[33800] | 396 | System.err.println("Total count for query: " + mapData.getTotalCount());
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| 397 |
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[33778] | 398 | } catch(Exception e) {
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[33790] | 399 | logger.error(e.getMessage(), e);
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[33778] | 400 | }
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| 401 | }
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| 402 | }
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