source: main/trunk/greenstone2/perllib/plugouts/GreenstoneSQLPlugout.pm@ 32555

Last change on this file since 32555 was 32555, checked in by ak19, 5 years ago
  1. In GreenstoneSQLPlugout, removeold is now paramterised (as are keepold, incremental, incremental_mode). 2. Deletion on incremental_build works. But there are more questions. Why are there 4 passes? What to do on reindexing and when to do it (should it happen during GS SQL plugout or plugin)?
File size: 15.2 KB
RevLine 
[32518]1###########################################################################
2#
[32527]3# GreenstoneSQLPlugout.pm -- plugout module for writing all or some the
4# Greenstone document format (metadata and/or fulltext) into a (My)SQL db.
[32526]5# The rest is then still written out by GreenstoneXMLPlugout as usual.
[32518]6# A component of the Greenstone digital library software
7# from the New Zealand Digital Library Project at the
8# University of Waikato, New Zealand.
9#
10# Copyright (C) 2006 New Zealand Digital Library Project
11#
12# This program is free software; you can redistribute it and/or modify
13# it under the terms of the GNU General Public License as published by
14# the Free Software Foundation; either version 2 of the License, or
15# (at your option) any later version.
16#
17# This program is distributed in the hope that it will be useful,
18# but WITHOUT ANY WARRANTY; without even the implied warranty of
19# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
20# GNU General Public License for more details.
21#
22# You should have received a copy of the GNU General Public License
23# along with this program; if not, write to the Free Software
24# Foundation, Inc., 675 Mass Ave, Cambridge, MA 02139, USA.
25#
26###########################################################################
27
[32527]28package GreenstoneSQLPlugout;
[32518]29
30use strict;
31no strict 'refs';
32no strict 'subs';
33
[32520]34use GreenstoneXMLPlugout;
[32518]35use docprint;
[32529]36use gssql;
[32518]37
[32524]38use DBI; # the central package for this plugout
39
[32518]40
[32521]41# TODO: SIGTERM rollback and disconnect?
[32543]42# TODO Q: what about verbosity for debugging, instead of current situation of printing out upon debug set at the expense of writing to db
[32541]43# TODO Q: introduced site_name param to plugins and plugouts. Did I do it right? And should they have hiddengli = "yes"
[32521]44
[32543]45# this plugout does not output the metadata and/or fulltxt xml to a file,
46# but outputs rows into a mysql table for metadata and/or a table for fulltxt
[32518]47sub BEGIN {
[32527]48 @GreenstoneSQLPlugout::ISA = ('GreenstoneXMLPlugout');
[32518]49}
50
[32529]51# NOTTODO: die() statements need to be replaced with premature_termination
52# which should ensure the GreenstoneXMLPlugin (group)'s stuff is closed and cleaned up SOMEHOW
53# It's fine: the die() stmts all take place before setting up the super class' begin
[32520]54
[32542]55# TODO Q: about build_mode: how to detect removeold
[32520]56# TODO: deal with -removeold and everything? Or type out instructions for user
57
[32518]58# TODO Q: what is "group" in GreenstoneXMLPlugout?
59
60my $process_mode_list =
61 [ { 'name' => "meta_only",
[32537]62 'desc' => "{GreenstoneSQLPlug.process_mode.meta_only}" },
[32518]63 { 'name' => "text_only",
[32537]64 'desc' => "{GreenstoneSQLPlug.process_mode.text_only}" },
[32518]65 { 'name' => "all",
[32537]66 'desc' => "{GreenstoneSQLPlug.process_mode.all}" } ];
[32518]67
[32541]68# The following are the saveas.options:
[32518]69my $arguments = [
[32541]70 { 'name' => "process_mode",
71 'desc' => "{GreenstoneSQLPlug.process_mode}",
72 'type' => "enum",
73 'list' => $process_mode_list,
74 'deft' => "all",
75 'reqd' => "no",
76 'hiddengli' => "no"},
77 { 'name' => "db_driver",
78 'desc' => "{GreenstoneSQLPlug.db_driver}",
79 'type' => "string",
80 'deft' => "mysql",
81 'reqd' => "yes"},
82 { 'name' => "db_client_user",
83 'desc' => "{GreenstoneSQLPlug.db_client_user}",
84 'type' => "string",
85 'deft' => "root",
86 'reqd' => "yes"},
87 { 'name' => "db_client_pwd",
88 'desc' => "{GreenstoneSQLPlug.db_client_pwd}",
89 'type' => "string",
90 'deft' => "",
91 'reqd' => "yes"}, # pwd required?
92 { 'name' => "db_host",
93 'desc' => "{GreenstoneSQLPlug.db_host}",
94 'type' => "string",
95 'deft' => "127.0.0.1",
96 'reqd' => "yes"},
97 { 'name' => "db_encoding",
98 'desc' => "{GreenstoneSQLPlug.db_encoding}",
99 'type' => "string",
100 'deft' => "utf8",
101 'reqd' => "yes"}
102 ];
[32518]103
[32527]104my $options = { 'name' => "GreenstoneSQLPlugout",
105 'desc' => "{GreenstoneSQLPlugout.desc}",
[32518]106 'abstract' => "no",
107 'inherits' => "yes",
108 'args' => $arguments };
109
110sub new {
111 my ($class) = shift (@_);
112 my ($plugoutlist, $inputargs,$hashArgOptLists) = @_;
113 push(@$plugoutlist, $class);
114
115 push(@{$hashArgOptLists->{"ArgList"}},@{$arguments});
116 push(@{$hashArgOptLists->{"OptList"}},$options);
117
118 my $self = new GreenstoneXMLPlugout($plugoutlist,$inputargs,$hashArgOptLists);
119
120 if ($self->{'info_only'}) {
121 # don't worry about any options etc
122 return bless $self, $class;
123 }
[32527]124 print STDERR "***** GreenstoneSQLPlugout process mode = \"", $self->{'process_mode'}, "\"\n";
[32518]125
126 return bless $self, $class;
127}
128
[32520]129# connect here and ensure all tables and databases exist
130sub begin {
131
132 my $self= shift (@_);
133
[32541]134 # The saveas.options
135 #print STDERR "@@@@ PLUGOUT db_pwd: " . $self->{'db_client_pwd'} . "\n";
136 #print STDERR "@@@@ user: " . $self->{'db_client_user'} . "\n";
137 #print STDERR "@@@@ db_host: " . $self->{'db_host'} . "\n";
138 #print STDERR "@@@@ db_enc: " . $self->{'db_encoding'} . "\n";
139 #print STDERR "@@@@ db_driver: " . $self->{'db_driver'} . "\n";
140 #print STDERR "@@@@ proc_mode: " . $self->{'process_mode'} . "\n";
141
[32520]142 ############ LOAD NECESSARY OPTIONS ###########
[32541]143 #print "@@@ plugout SITE NAME: ". $self->{'site_name'} . "\n" if defined $self->{'site_name'};
144 #print STDERR "########## COLLECTION: ". $ENV{'GSDLCOLLECTION'}."\n";
145
[32527]146 print STDERR "***** GreenstoneSQLPlugout process mode = \"", $self->{'process_mode'}, "\"\n";
[32529]147
148 my $db_params = {
[32530]149 'collection_name' => $ENV{'GSDLCOLLECTION'},
[32529]150 'db_encoding' => $self->{'db_encoding'}
151 };
152
153 my $gs_sql = new gssql($db_params);
[32520]154
[32530]155 # try connecting to the mysql db, if that fails it will die
156 # so don't bother preparing GreenstoneXMLPlugout by calling superclass' begin()
157 if(!$gs_sql->connect_to_db({
158 'db_driver' => $self->{'db_driver'},
159 'db_client_user' => $self->{'db_client_user'},
160 'db_client_pwd' => $self->{'db_client_pwd'},
161 'db_host' => $self->{'db_host'}
162 })
163 )
164 {
[32520]165 # This is fatal for the plugout, let's terminate here
166 # PrintError would already have displayed the warning message on connection fail
167 die("Could not connect to db. Can't proceed.\n");
168 }
[32524]169
[32541]170 my $db_name = $self->{'site_name'} || "greenstone2"; # one database per GS3 site, for GS2 the db is called greenstone2
[32555]171 my $build_mode = ($self->{'removeold'}) ? "removeold" : "incremental";
172 print STDERR "@@@@@@@@@@@@ remove_old: $build_mode\n";
173
[32529]174 if(!$gs_sql->load_db_and_tables($db_name, $build_mode)) {
[32524]175
[32536]176 # This is fatal for the plugout, let's terminate here after disconnecting again
177 # PrintError would already have displayed the warning message on load fail
178 $gs_sql->disconnect_from_db()
[32541]179 || warn("Unable to disconnect from database.\n");
[32536]180 die("Could not use db $db_name and/or prepare its tables. Can't proceed.\n");
[32520]181 }
182
183 # prepare the shared/common HANDLES to SQL insert statements that contain placeholders
[32521]184 # and which we will reuse repeatedly when actually executing the insert statements
[32520]185 my $proc_mode = $self->{'process_mode'};
186 if($proc_mode eq "all" || $proc_mode eq "meta_only" ) {
[32529]187 $self->{'metadata_prepared_insert_statement_handle'} = $gs_sql->prepare_insert_metadata_row_stmthandle();
[32520]188 }
189 if($proc_mode eq "all" || $proc_mode eq "text_only" ) {
[32529]190 $self->{'fulltxt_prepared_insert_statement_handle'} = $gs_sql->prepare_insert_fulltxt_row_stmthandle();
[32520]191 }
[32521]192
[32529]193 # store the DBI wrapper instance
194 $self->{'gs_sql'} = $gs_sql;
195
[32524]196 print STDERR "#### Meta stmt: " . $self->{'metadata_prepared_insert_statement_handle'}->{'Statement'} . "\n";
197 print STDERR "#### Full stmt: " . $self->{'fulltxt_prepared_insert_statement_handle'}->{'Statement'} . "\n";
198
[32521]199 # if setting up to work with sql db failed, we'd have terminated and wouldn't come up to here:
200 # won't bother preparing GreenstoneXMLPlugout by calling superclass' begin()
201 # finally, can call begin on super - important as doc.xml is opened as a group etc
[32523]202
[32526]203 $self->SUPER::begin(@_);
[32520]204}
205
206# disconnect from database here, see inexport.pm
207sub end
208{
209 my $self = shift(@_);
210
[32521]211 # do the superclass stuff first, as any sql db failures should not prevent superclass cleanup
[32526]212 $self->SUPER::end(@_);
[32521]213
[32529]214 $self->{'gs_sql'}->disconnect_from_db() || warn("Unable to disconnect from database " . $self->{'site_name'} . "\n"); # disconnect_from_db() will also issue a warning, but this may be clearer
[32520]215}
[32533]216
[32542]217# Produce files called docsql.xml instead of doc.xml
[32536]218sub get_doc_xml_filename {
[32533]219 my $self = shift (@_);
[32536]220 my ($doc_obj) = @_;
221
[32542]222 return "docsql.xml";
[32533]223}
[32542]224
225# overriding to store doc OID as attribute of top level element: <Archive docoid="oid">
226sub output_xml_header {
227 my $self = shift (@_);
228 my ($outhandle, $doc_oid) = @_;
229
230 print $outhandle '<?xml version="1.0" encoding="utf-8" standalone="no"?>' . "\n";
231 print $outhandle "<!DOCTYPE Archive SYSTEM \"http://greenstone.org/dtd/Archive/1.0/Archive.dtd\">\n";
232 print $outhandle "<Archive docoid=\"$doc_oid\">\n";
233}
234
[32543]235# TODO: check arc-inf.db for whether each entry is to be deleted/indexed/reindexed/been indexed?
236# That's only for indexing, not for this step which only generates the content in archives dir
[32518]237sub saveas {
238 my $self = shift (@_);
239 my ($doc_obj, $doc_dir) = @_;
240
[32536]241# print STDERR "\n\n@@@ In saveas\n\n";
[32524]242
[32522]243 my $proc_mode = $self->{'process_mode'};
244
[32521]245 # 1. pre save out and saving debug handle
246
[32523]247 # must call superclass (pre/post) saveas methods, as they handle assoc_files too
[32526]248 my ($docxml_outhandler, $output_file) = $self->SUPER::pre_saveas(@_);
[32523]249
250 $self->{'debug_outhandle'} = $docxml_outhandler if ($self->{'debug'}); # STDOUT if debug
251
252 # TODO: also set debugging in begin()? Then stmts creating db and tables also sent to debug out and not executed
[32543]253
[32520]254
[32543]255 # 2. overriding saving behaviour to do what the superclass does (writing out doc.xml files,
256 # under new name of docsql.xml, with breadcrumbs pointing to sql db) PLUS saving to sql db
[32518]257
[32543]258 # NOTE: if proc_mode == all, then "breadcrumbs" (statements pointing viewer to the sql db
259 # for contents) go into both meta and txt elements of doc.xml (docsql.xml specifically):
[32522]260
[32543]261 # write the INVERSE into doc.xml as to what is written to the SQL db
[32523]262 my $docxml_output_options = { 'output' => docprint::OUTPUT_NONE };
263 if($proc_mode eq "meta_only" ) { # since only meta to go into MySQL db, text will go into docxml
264 $docxml_output_options->{'output'} = docprint::OUTPUT_TEXT_ONLY;
265 } elsif($proc_mode eq "text_only" ) { # since only full text to go into MySQL db, meta will go into docxml
266 $docxml_output_options->{'output'} = docprint::OUTPUT_META_ONLY;
[32518]267 }
[32521]268
[32523]269 # now we've prepared to write out whatever is meant to go into docxml
270 # and can do actual the steps superclass GreenstoneXMLPlugout carries out to write out docxml
[32543]271 # So: write out the doc xml file, "docsql.xml", for the current document
[32523]272 my $section_text = &docprint::get_section_xml($doc_obj, $docxml_output_options);
273 print $docxml_outhandler $section_text;
274
275
[32518]276 # We also write out whatever needs to go into the MySQL database
277 $self->write_meta_and_text($doc_obj);
278
[32520]279
[32521]280 # 3. post save out
[32526]281 #$self->SUPER::post_saveas(@_);
282 $self->SUPER::post_saveas($doc_obj, $doc_dir, $docxml_outhandler, $output_file);
[32521]283
[32523]284
[32521]285 # database connection is closed in end() method
286 # so we don't open and close over and over for each doc during a single build
[32518]287}
288
289
[32520]290# write meta and/or text PER DOC out to DB
[32518]291sub write_meta_and_text {
292 my $self = shift (@_);
293 my ($doc_obj) = @_;
[32531]294 my $doc_oid = $doc_obj->get_OID(); # this method processes a single doc at a time, so it uses the same OID throughout
[32518]295 my $root_section = $doc_obj->get_top_section();
296
[32520]297 # load the prepared INSERT statement handles for both tables (can be undef for any table depending on whether meta_only or txt_only are set)
298 my $metadata_table_sth = $self->{'metadata_prepared_insert_statement_handle'};
299 my $fulltxt_table_sth = $self->{'fulltxt_prepared_insert_statement_handle'};
[32518]300
[32524]301 $self->recursive_write_meta_and_text($doc_obj, $doc_oid, $root_section, $metadata_table_sth, $fulltxt_table_sth);
[32521]302}
[32518]303
304# Perl: Reading or Writing to Another Program
305# https://nnc3.com/mags/Perl3/cookbook/ch16_05.htm
306sub recursive_write_meta_and_text {
[32520]307 my $self = shift (@_);
308 my ($doc_obj, $doc_oid, $section, $metadata_table_sth, $fulltxt_table_sth) = @_;
309
310 # If section=ROOT, write "root" as section name into table
311 # doc->get_top_section() is the name of the doc root section, which is ""
312 my $section_name = ($section eq "") ? "root" : $section;
[32518]313
314 my $section_ptr = $doc_obj->_lookup_section ($section);
315 return "" unless defined $section_ptr;
316
[32520]317 my $debug_out = $self->{'debug_outhandle'};
[32531]318# print STDERR "#### Meta stmt: " . $metadata_table_sth->{'Statement'} . "\n";
319# print STDERR "#### Full stmt: " . $fulltxt_table_sth->{'Statement'} . "\n";
[32520]320
321 #my $proc_mode = $self->{'process_mode'};
322 #if($proc_mode eq "all" || $proc_mode eq "meta_only" ) {
323 if($metadata_table_sth) { # meta insert statement handle will be undef if not writing meta
324
325 foreach my $data (@{$section_ptr->{'metadata'}}) {
326 my $meta_name = $data->[0];
[32536]327 # TODO: does it need to be stored escaped, as it requires unescaping when read back in
328 # from db (unlike for reading back in from doc.xml)
[32524]329 my $escaped_meta_value = &docprint::escape_text($data->[1]);
[32518]330
[32520]331 # Write out the current section's meta to collection db's METADATA table
332
333 # for each set of values to write to meta table, execute the prepared statement, filling in the values
334
335 if($self->{'debug'}) {
336 # just print the statement we were going to execute
337
[32524]338 print $debug_out $metadata_table_sth->{'Statement'} . "($doc_oid, $section_name, $meta_name, $escaped_meta_value)\n";
[32520]339 }
340 else {
[32533]341
342 $metadata_table_sth->execute($doc_oid, $section_name, $meta_name, $escaped_meta_value)
343 || warn ("Unable to write metadata row to db:\n\tOID $doc_oid, section $section_name,\n\tmeta name: $meta_name, val: $escaped_meta_value");
[32520]344 # Execution failure will print out info anyway: since db connection sets PrintError
345 }
[32518]346 }
347 }
[32520]348
349 #if($proc_mode eq "all" || $proc_mode eq "text_only" ) {
350 if($fulltxt_table_sth) { # fulltxt insert statement handle will be undef if not writing fulltxt
351
352 if($self->{'debug'}) {
353 # just print the statement we were going to execute, minus the fulltxt value
354 my $txt_repr = $section_ptr->{'text'} ? "<TXT>" : "NULL";
[32524]355 print $debug_out $fulltxt_table_sth->{'Statement'} . "($doc_oid, $section_name, $txt_repr)\n";
[32520]356 } else {
[32524]357 my $section_text = &docprint::escape_text($section_ptr->{'text'});
[32520]358
359 # fulltxt column can be SQL NULL. undef value gets written out as NULL:
360 # https://stackoverflow.com/questions/12708633/which-one-represents-null-undef-or-empty-string
361
362 # Write out the current section's text to collection db's FULLTeXT table
[32533]363 $fulltxt_table_sth->execute($doc_oid, $section_name, $section_text)
364 || warn ("Unable to write fulltxt row to db for row:\n\tOID $doc_oid, section $section_name");
[32520]365 # Execution failure will print out info anyway: since db connection sets PrintError
366 }
[32518]367 }
368
369 # output all subsections: RECURSIVE CALL
370 foreach my $subsection (@{$section_ptr->{'subsection_order'}}) {
[32531]371 $self->recursive_write_meta_and_text($doc_obj, $doc_oid, "$section.$subsection", $metadata_table_sth, $fulltxt_table_sth);
[32518]372 }
373}
374
375
3761;
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